Structure

Physi-Chem Properties

Molecular Weight:  610.19
Volume:  563.46
LogP:  -0.59
LogD:  1.156
LogS:  -3.504
# Rotatable Bonds:  7
TPSA:  234.29
# H-Bond Aceptor:  15
# H-Bond Donor:  8
# Rings:  5
# Heavy Atoms:  15

MedChem Properties

QED Drug-Likeness Score:  0.185
Synthetic Accessibility Score:  4.818
Fsp3:  0.536
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.484
MDCK Permeability:  9.398152178619057e-05
Pgp-inhibitor:  0.001
Pgp-substrate:  0.994
Human Intestinal Absorption (HIA):  0.953
20% Bioavailability (F20%):  0.009
30% Bioavailability (F30%):  0.999

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.254
Plasma Protein Binding (PPB):  77.64027404785156%
Volume Distribution (VD):  0.395
Pgp-substrate:  20.518203735351562%

ADMET: Metabolism

CYP1A2-inhibitor:  0.003
CYP1A2-substrate:  0.06
CYP2C19-inhibitor:  0.014
CYP2C19-substrate:  0.295
CYP2C9-inhibitor:  0.001
CYP2C9-substrate:  0.507
CYP2D6-inhibitor:  0.014
CYP2D6-substrate:  0.207
CYP3A4-inhibitor:  0.016
CYP3A4-substrate:  0.046

ADMET: Excretion

Clearance (CL):  1.489
Half-life (T1/2):  0.195

ADMET: Toxicity

hERG Blockers:  0.022
Human Hepatotoxicity (H-HT):  0.084
Drug-inuced Liver Injury (DILI):  0.948
AMES Toxicity:  0.499
Rat Oral Acute Toxicity:  0.084
Maximum Recommended Daily Dose:  0.023
Skin Sensitization:  0.03
Carcinogencity:  0.87
Eye Corrosion:  0.003
Eye Irritation:  0.008
Respiratory Toxicity:  0.06

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Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC44328

Natural Product ID:  NPC44328
Common Name*:   5-Hydroxy-2-(3-Hydroxy-4-Methoxyphenyl)-7-[3,4,5-Trihydroxy-6-[(3,4,5-Trihydroxy-6-Methyloxan-2-Yl)Oxymethyl]Oxan-2-Yl]Oxy-2,3-Dihydrochromen-4-One
IUPAC Name:   5-hydroxy-2-(3-hydroxy-4-methoxyphenyl)-7-[3,4,5-trihydroxy-6-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxymethyl]oxan-2-yl]oxy-2,3-dihydrochromen-4-one
Synonyms:  
Standard InCHIKey:  QUQPHWDTPGMPEX-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C28H34O15/c1-10-21(32)23(34)25(36)27(40-10)39-9-19-22(33)24(35)26(37)28(43-19)41-12-6-14(30)20-15(31)8-17(42-18(20)7-12)11-3-4-16(38-2)13(29)5-11/h3-7,10,17,19,21-30,32-37H,8-9H2,1-2H3
SMILES:  CC1C(C(C(C(OCC2C(C(C(C(Oc3cc(c4C(=O)CC(c5ccc(c(c5)O)OC)Oc4c3)O)O2)O)O)O)O1)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1535112
PubChem CID:   3594
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0003533] Flavonoid-7-O-glycosides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.1016/j.foodchem.2009.03.042]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(99)00119-3]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. DOI[10.1078/0176-1617-00195]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.3136/fstr.15.499]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.5897/AJB10.140]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.5897/AJB2010.000-3252]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[10606602]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[10757735]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Leaves n.a. n.a. PMID[12088434]
NPO28679 Prunus mume Species Rosaceae Eukaryota flowers n.a. n.a. PMID[12193020]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[14735439]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. leaf n.a. PMID[15388977]
NPO19805 Forsythia viridissima Species Oleaceae Eukaryota n.a. flower n.a. PMID[15481244]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. callus n.a. PMID[15715262]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota n.a. root n.a. PMID[16564530]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[16755060]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. PMID[17156960]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. stem n.a. PMID[17202689]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[17666848]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[17689080]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[18220354]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[18239311]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19785430]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19962306]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20078074]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. pericarp n.a. PMID[20628994]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[21707257]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. fruit n.a. PMID[23872723]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[24175626]
NPO28679 Prunus mume Species Rosaceae Eukaryota fruits n.a. n.a. PMID[24485782]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers Tongxiang, China n.a. PMID[24621197]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[25620156]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota whole plants Nanning District, Guangxi Province, China 2012-Sep PMID[25647077]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota aerial parts Seoul, Korea n.a. PMID[26331882]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. PMID[26422318]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[26562741]
NPO26395 Siegesbeckia pubescens Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[28009521]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota Fruits n.a. n.a. PMID[28218000]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. PMID[28248102]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[28445039]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota Roots n.a. n.a. PMID[29359942]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[29517238]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota Roots n.a. n.a. PMID[30024167]
NPO19805 Forsythia viridissima Species Oleaceae Eukaryota Roots n.a. n.a. PMID[30676026]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[31625751]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota Roots n.a. n.a. PMID[31944695]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[32996318]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. Along the Valencian coast, Spain 2020-Jun&Jul PMID[35161358]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota Roots; Tubers n.a. n.a. PMID[7714535]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO23256 Mentha arvensis Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Root Bark n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Fruit Juice n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Herb n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO23256 Mentha arvensis Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Pericarp n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14650 Lobelia chinensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10082 Citrus unshiu Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19805 Forsythia viridissima Species Oleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16308 Citrus wilsonii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28679 Prunus mume Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16741 Codonopsis pilosula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12935 Thymus quinquecostatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8789 Schizonepeta tenuifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO28679 Prunus mume Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16308 Citrus wilsonii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8789 Schizonepeta tenuifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14650 Lobelia chinensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13857 Mentha canadensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19805 Forsythia viridissima Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12935 Thymus quinquecostatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10082 Citrus unshiu Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16741 Codonopsis pilosula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14959.1 Codonopsis pilosula subsp. tangshen Subspecies Campanulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28679 Prunus mume Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO10082 Citrus unshiu Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8789 Schizonepeta tenuifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14650 Lobelia chinensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16741 Codonopsis pilosula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16308 Citrus wilsonii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8789 Schizonepeta tenuifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13857 Mentha canadensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28679 Prunus mume Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16308 Citrus wilsonii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16741 Codonopsis pilosula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19805 Forsythia viridissima Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13668 Taraxacum platycarpum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28940 Sigesbeckia glabrescens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14650 Lobelia chinensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14959.1 Codonopsis pilosula subsp. tangshen Subspecies Campanulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12935 Thymus quinquecostatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10082 Citrus unshiu Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1880 Schizonepeta tenuisfolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23256 Mentha arvensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26395 Siegesbeckia pubescens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1596 Taraxacum borealisinense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23706 Breea segeta n.a. n.a. n.a. n.a. n.a. n.a. Database[TM-MC]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23327 Taraxacum coreanum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29417 Fallopia multiflora Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13668 Taraxacum platycarpum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16308 Citrus wilsonii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16741 Codonopsis pilosula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23327 Taraxacum coreanum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11697 Cirsium setosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10082 Citrus unshiu Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3292 Desmodium styracifolium Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8789 Schizonepeta tenuifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23256 Mentha arvensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14959.1 Codonopsis pilosula subsp. tangshen Subspecies Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4391 Hypericum perforatum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21387 Forsythia suspensa Species Oleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13857 Mentha canadensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28679 Prunus mume Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14650 Lobelia chinensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12935 Thymus quinquecostatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 31622.8 nM PMID[518301]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 5623.4 nM PMID[518302]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 35481.3 nM PMID[518301]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 0.9 nM PMID[518303]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 0.7 nM PMID[518304]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 0.6 nM PMID[518304]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 33.5 nM PMID[518303]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 13324.4 nM PMID[518304]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 4727.7 nM PMID[518303]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency n.a. 13324.4 nM PMID[518303]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC44328 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC79056
1.0 High Similarity NPC105095
1.0 High Similarity NPC177731
0.9937 High Similarity NPC293629
0.9937 High Similarity NPC43587
0.9812 High Similarity NPC209296
0.9812 High Similarity NPC105283
0.9812 High Similarity NPC195257
0.9811 High Similarity NPC5778
0.9811 High Similarity NPC236934
0.9753 High Similarity NPC239549
0.9753 High Similarity NPC51774
0.9753 High Similarity NPC236191
0.9753 High Similarity NPC208668
0.9752 High Similarity NPC51326
0.9752 High Similarity NPC231194
0.9693 High Similarity NPC198199
0.9693 High Similarity NPC102028
0.9693 High Similarity NPC142996
0.9691 High Similarity NPC267254
0.9691 High Similarity NPC256760
0.9691 High Similarity NPC301683
0.9691 High Similarity NPC261254
0.9691 High Similarity NPC180918
0.9689 High Similarity NPC86008
0.9689 High Similarity NPC229687
0.9689 High Similarity NPC61791
0.9688 High Similarity NPC210073
0.9688 High Similarity NPC115674
0.9686 High Similarity NPC29830
0.9634 High Similarity NPC255799
0.9632 High Similarity NPC204693
0.963 High Similarity NPC150767
0.963 High Similarity NPC183357
0.963 High Similarity NPC22195
0.963 High Similarity NPC21190
0.963 High Similarity NPC293004
0.963 High Similarity NPC78734
0.9627 High Similarity NPC229729
0.9627 High Similarity NPC477502
0.9627 High Similarity NPC45400
0.9625 High Similarity NPC284277
0.9625 High Similarity NPC311830
0.9625 High Similarity NPC22832
0.9625 High Similarity NPC475366
0.9625 High Similarity NPC475497
0.9623 High Similarity NPC127782
0.9623 High Similarity NPC300537
0.9576 High Similarity NPC120952
0.9576 High Similarity NPC89052
0.9576 High Similarity NPC251417
0.9573 High Similarity NPC476472
0.9573 High Similarity NPC220173
0.9573 High Similarity NPC16194
0.9573 High Similarity NPC473327
0.9573 High Similarity NPC19108
0.9573 High Similarity NPC294815
0.9571 High Similarity NPC156977
0.9568 High Similarity NPC95855
0.9568 High Similarity NPC170675
0.9568 High Similarity NPC52382
0.9568 High Similarity NPC270578
0.9568 High Similarity NPC472381
0.9568 High Similarity NPC210042
0.9568 High Similarity NPC472383
0.9568 High Similarity NPC112755
0.9568 High Similarity NPC471457
0.9565 High Similarity NPC8856
0.9565 High Similarity NPC70441
0.9563 High Similarity NPC222936
0.9563 High Similarity NPC270335
0.9563 High Similarity NPC284960
0.9563 High Similarity NPC88023
0.9563 High Similarity NPC243930
0.9563 High Similarity NPC309025
0.9563 High Similarity NPC191306
0.9563 High Similarity NPC19709
0.9518 High Similarity NPC192539
0.9515 High Similarity NPC292019
0.9515 High Similarity NPC202908
0.9515 High Similarity NPC122467
0.9515 High Similarity NPC48984
0.9515 High Similarity NPC219043
0.9515 High Similarity NPC14187
0.9512 High Similarity NPC25724
0.9509 High Similarity NPC44558
0.9509 High Similarity NPC34287
0.9509 High Similarity NPC95866
0.9509 High Similarity NPC471416
0.9509 High Similarity NPC67105
0.9509 High Similarity NPC285197
0.9509 High Similarity NPC218488
0.9509 High Similarity NPC474434
0.9509 High Similarity NPC52353
0.9509 High Similarity NPC194483
0.9506 High Similarity NPC93099
0.9506 High Similarity NPC160156
0.9506 High Similarity NPC92565
0.9503 High Similarity NPC15358
0.9503 High Similarity NPC165720
0.95 High Similarity NPC77660
0.95 High Similarity NPC189142
0.95 High Similarity NPC473043
0.9497 High Similarity NPC271270
0.9497 High Similarity NPC246469
0.9497 High Similarity NPC142860
0.9497 High Similarity NPC97285
0.9458 High Similarity NPC173837
0.9458 High Similarity NPC241196
0.9455 High Similarity NPC294629
0.9451 High Similarity NPC471725
0.9451 High Similarity NPC3583
0.9451 High Similarity NPC26230
0.9451 High Similarity NPC155877
0.9451 High Similarity NPC307518
0.9451 High Similarity NPC259152
0.9451 High Similarity NPC134532
0.9451 High Similarity NPC60735
0.9451 High Similarity NPC47140
0.9451 High Similarity NPC48773
0.9451 High Similarity NPC472386
0.9451 High Similarity NPC203259
0.9451 High Similarity NPC475155
0.9451 High Similarity NPC33054
0.9451 High Similarity NPC471748
0.9451 High Similarity NPC235575
0.9451 High Similarity NPC67134
0.9451 High Similarity NPC176740
0.9451 High Similarity NPC205076
0.9448 High Similarity NPC226294
0.9448 High Similarity NPC203050
0.9448 High Similarity NPC219904
0.9448 High Similarity NPC58053
0.9448 High Similarity NPC186807
0.9448 High Similarity NPC475942
0.9448 High Similarity NPC105025
0.9448 High Similarity NPC223747
0.9448 High Similarity NPC227508
0.9448 High Similarity NPC183036
0.9448 High Similarity NPC469931
0.9448 High Similarity NPC45638
0.9448 High Similarity NPC120099
0.9448 High Similarity NPC225434
0.9448 High Similarity NPC201292
0.9448 High Similarity NPC93337
0.9444 High Similarity NPC197285
0.9444 High Similarity NPC21100
0.9441 High Similarity NPC88043
0.9441 High Similarity NPC168822
0.9437 High Similarity NPC182045
0.9401 High Similarity NPC110941
0.9401 High Similarity NPC126784
0.9401 High Similarity NPC473682
0.9401 High Similarity NPC470444
0.9401 High Similarity NPC470443
0.9401 High Similarity NPC241423
0.9401 High Similarity NPC473571
0.9398 High Similarity NPC169733
0.9398 High Similarity NPC471669
0.9398 High Similarity NPC89127
0.9394 High Similarity NPC472993
0.939 High Similarity NPC210808
0.939 High Similarity NPC29958
0.939 High Similarity NPC254855
0.939 High Similarity NPC105511
0.939 High Similarity NPC136042
0.939 High Similarity NPC156869
0.939 High Similarity NPC199079
0.939 High Similarity NPC67326
0.939 High Similarity NPC255157
0.939 High Similarity NPC206123
0.939 High Similarity NPC259896
0.939 High Similarity NPC224462
0.939 High Similarity NPC212748
0.9387 High Similarity NPC173637
0.9387 High Similarity NPC84362
0.9387 High Similarity NPC275454
0.9387 High Similarity NPC226304
0.9387 High Similarity NPC116745
0.9387 High Similarity NPC325555
0.9387 High Similarity NPC223424
0.9387 High Similarity NPC127546
0.9387 High Similarity NPC58716
0.9387 High Similarity NPC45618
0.9387 High Similarity NPC265530
0.9387 High Similarity NPC146792
0.9387 High Similarity NPC317489
0.9387 High Similarity NPC52550
0.9383 High Similarity NPC277205
0.9379 High Similarity NPC190450
0.9379 High Similarity NPC148273
0.9375 High Similarity NPC110349
0.9349 High Similarity NPC148710
0.9341 High Similarity NPC476619
0.9341 High Similarity NPC476623
0.9341 High Similarity NPC476622
0.9341 High Similarity NPC475261
0.9341 High Similarity NPC476618
0.9341 High Similarity NPC472387
0.9341 High Similarity NPC476620

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC44328 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD7074 Phase 3
0.9812 High Similarity NPD7054 Approved
0.9752 High Similarity NPD7472 Approved
0.9512 High Similarity NPD7251 Discontinued
0.9455 High Similarity NPD7808 Phase 3
0.9451 High Similarity NPD6797 Phase 2
0.9268 High Similarity NPD3818 Discontinued
0.9264 High Similarity NPD6166 Phase 2
0.9264 High Similarity NPD6167 Clinical (unspecified phase)
0.9264 High Similarity NPD6168 Clinical (unspecified phase)
0.913 High Similarity NPD4381 Clinical (unspecified phase)
0.9119 High Similarity NPD1934 Approved
0.9107 High Similarity NPD4338 Clinical (unspecified phase)
0.9096 High Similarity NPD7804 Clinical (unspecified phase)
0.8944 High Similarity NPD2393 Clinical (unspecified phase)
0.8712 High Similarity NPD2801 Approved
0.8606 High Similarity NPD4868 Clinical (unspecified phase)
0.8545 High Similarity NPD3817 Phase 2
0.8528 High Similarity NPD4380 Phase 2
0.85 High Similarity NPD1511 Approved
0.8497 Intermediate Similarity NPD6559 Discontinued
0.8494 Intermediate Similarity NPD3882 Suspended
0.8443 Intermediate Similarity NPD7075 Discontinued
0.8439 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8395 Intermediate Similarity NPD1512 Approved
0.8343 Intermediate Similarity NPD5494 Approved
0.8266 Intermediate Similarity NPD7228 Approved
0.8263 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8214 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8187 Intermediate Similarity NPD1549 Phase 2
0.8187 Intermediate Similarity NPD6959 Discontinued
0.8155 Intermediate Similarity NPD1465 Phase 2
0.8155 Intermediate Similarity NPD7819 Suspended
0.8114 Intermediate Similarity NPD5844 Phase 1
0.811 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8103 Intermediate Similarity NPD7473 Discontinued
0.8095 Intermediate Similarity NPD6801 Discontinued
0.809 Intermediate Similarity NPD8313 Approved
0.809 Intermediate Similarity NPD8312 Approved
0.8077 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8072 Intermediate Similarity NPD1653 Approved
0.8036 Intermediate Similarity NPD7411 Suspended
0.8035 Intermediate Similarity NPD6232 Discontinued
0.8012 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD5402 Approved
0.7978 Intermediate Similarity NPD7685 Pre-registration
0.7977 Intermediate Similarity NPD7199 Phase 2
0.7967 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.795 Intermediate Similarity NPD2796 Approved
0.7939 Intermediate Similarity NPD6799 Approved
0.7904 Intermediate Similarity NPD5403 Approved
0.7901 Intermediate Similarity NPD7266 Discontinued
0.7892 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD1510 Phase 2
0.7862 Intermediate Similarity NPD1613 Approved
0.7862 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7861 Intermediate Similarity NPD6234 Discontinued
0.7853 Intermediate Similarity NPD3751 Discontinued
0.7841 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7836 Intermediate Similarity NPD8455 Phase 2
0.7829 Intermediate Similarity NPD3787 Discontinued
0.7824 Intermediate Similarity NPD8151 Discontinued
0.7802 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD5401 Approved
0.7778 Intermediate Similarity NPD7240 Approved
0.7778 Intermediate Similarity NPD37 Approved
0.7765 Intermediate Similarity NPD6599 Discontinued
0.775 Intermediate Similarity NPD1240 Approved
0.7746 Intermediate Similarity NPD4966 Approved
0.7746 Intermediate Similarity NPD4967 Phase 2
0.7746 Intermediate Similarity NPD4965 Approved
0.7744 Intermediate Similarity NPD7783 Phase 2
0.7744 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7725 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.772 Intermediate Similarity NPD7584 Approved
0.7684 Intermediate Similarity NPD6776 Approved
0.7684 Intermediate Similarity NPD6782 Approved
0.7684 Intermediate Similarity NPD6781 Approved
0.7684 Intermediate Similarity NPD6780 Approved
0.7684 Intermediate Similarity NPD6778 Approved
0.7684 Intermediate Similarity NPD6779 Approved
0.7684 Intermediate Similarity NPD6777 Approved
0.7673 Intermediate Similarity NPD3027 Phase 3
0.7656 Intermediate Similarity NPD7698 Approved
0.7656 Intermediate Similarity NPD7696 Phase 3
0.7656 Intermediate Similarity NPD7697 Approved
0.7656 Intermediate Similarity NPD7435 Discontinued
0.7654 Intermediate Similarity NPD1607 Approved
0.7644 Intermediate Similarity NPD7768 Phase 2
0.764 Intermediate Similarity NPD943 Approved
0.761 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7593 Intermediate Similarity NPD1933 Approved
0.759 Intermediate Similarity NPD7701 Phase 2
0.7584 Intermediate Similarity NPD3926 Phase 2
0.7557 Intermediate Similarity NPD919 Approved
0.7547 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7545 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7545 Intermediate Similarity NPD4628 Phase 3
0.7545 Intermediate Similarity NPD3750 Approved
0.753 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7526 Intermediate Similarity NPD7870 Phase 2
0.7526 Intermediate Similarity NPD7871 Phase 2
0.7516 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7513 Intermediate Similarity NPD6823 Phase 2
0.75 Intermediate Similarity NPD3749 Approved
0.7487 Intermediate Similarity NPD7699 Phase 2
0.7487 Intermediate Similarity NPD7700 Phase 2
0.7485 Intermediate Similarity NPD230 Phase 1
0.7472 Intermediate Similarity NPD1247 Approved
0.7448 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD8319 Approved
0.7436 Intermediate Similarity NPD8320 Phase 1
0.7424 Intermediate Similarity NPD7874 Approved
0.7424 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7421 Intermediate Similarity NPD6535 Approved
0.7421 Intermediate Similarity NPD6534 Approved
0.741 Intermediate Similarity NPD2935 Discontinued
0.741 Intermediate Similarity NPD1551 Phase 2
0.7409 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7399 Intermediate Similarity NPD7458 Discontinued
0.7396 Intermediate Similarity NPD6190 Approved
0.7387 Intermediate Similarity NPD7801 Approved
0.7385 Intermediate Similarity NPD7680 Approved
0.7381 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD6674 Discontinued
0.7378 Intermediate Similarity NPD447 Suspended
0.7368 Intermediate Similarity NPD2533 Approved
0.7368 Intermediate Similarity NPD2534 Approved
0.7368 Intermediate Similarity NPD2532 Approved
0.7344 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD7585 Approved
0.7305 Intermediate Similarity NPD6100 Approved
0.7305 Intermediate Similarity NPD6099 Approved
0.7287 Intermediate Similarity NPD8150 Discontinued
0.7278 Intermediate Similarity NPD2800 Approved
0.7273 Intermediate Similarity NPD7583 Approved
0.7267 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD3748 Approved
0.7243 Intermediate Similarity NPD5953 Discontinued
0.7229 Intermediate Similarity NPD6651 Approved
0.7228 Intermediate Similarity NPD7286 Phase 2
0.7209 Intermediate Similarity NPD7390 Discontinued
0.72 Intermediate Similarity NPD3226 Approved
0.7196 Intermediate Similarity NPD8434 Phase 2
0.7188 Intermediate Similarity NPD6212 Phase 3
0.7188 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7188 Intermediate Similarity NPD6213 Phase 3
0.7184 Intermediate Similarity NPD920 Approved
0.7178 Intermediate Similarity NPD4908 Phase 1
0.7178 Intermediate Similarity NPD6832 Phase 2
0.717 Intermediate Similarity NPD1091 Approved
0.7166 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.715 Intermediate Similarity NPD4363 Phase 3
0.715 Intermediate Similarity NPD4360 Phase 2
0.7143 Intermediate Similarity NPD7033 Discontinued
0.7143 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD9494 Approved
0.7095 Intermediate Similarity NPD5353 Approved
0.7091 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7088 Intermediate Similarity NPD8127 Discontinued
0.7081 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7081 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.7079 Intermediate Similarity NPD6844 Discontinued
0.7076 Intermediate Similarity NPD1243 Approved
0.7069 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7068 Intermediate Similarity NPD6842 Approved
0.7068 Intermediate Similarity NPD6841 Approved
0.7068 Intermediate Similarity NPD6843 Phase 3
0.7067 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD2344 Approved
0.7059 Intermediate Similarity NPD2346 Discontinued
0.7055 Intermediate Similarity NPD2798 Approved
0.7052 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD2799 Discontinued
0.7024 Intermediate Similarity NPD7930 Approved
0.7022 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD5242 Approved
0.7006 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.6994 Remote Similarity NPD1203 Approved
0.6988 Remote Similarity NPD6798 Discontinued
0.6988 Remote Similarity NPD2313 Discontinued
0.6985 Remote Similarity NPD5005 Approved
0.6985 Remote Similarity NPD5006 Approved
0.6982 Remote Similarity NPD7097 Phase 1
0.6977 Remote Similarity NPD1652 Phase 2
0.6973 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6971 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6964 Remote Similarity NPD6355 Discontinued
0.6964 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6964 Remote Similarity NPD5124 Phase 1
0.6964 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6957 Remote Similarity NPD1610 Phase 2
0.6957 Remote Similarity NPD5710 Approved
0.6957 Remote Similarity NPD5711 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data