Structure

Physi-Chem Properties

Molecular Weight:  436.1
Volume:  398.488
LogP:  0.985
LogD:  0.399
LogS:  -3.664
# Rotatable Bonds:  4
TPSA:  179.28
# H-Bond Aceptor:  11
# H-Bond Donor:  6
# Rings:  4
# Heavy Atoms:  11

MedChem Properties

QED Drug-Likeness Score:  0.292
Synthetic Accessibility Score:  3.97
Fsp3:  0.35
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.221
MDCK Permeability:  1.32585382743855e-05
Pgp-inhibitor:  0.007
Pgp-substrate:  0.989
Human Intestinal Absorption (HIA):  0.723
20% Bioavailability (F20%):  0.008
30% Bioavailability (F30%):  0.979

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.048
Plasma Protein Binding (PPB):  78.57817077636719%
Volume Distribution (VD):  1.0
Pgp-substrate:  18.678171157836914%

ADMET: Metabolism

CYP1A2-inhibitor:  0.454
CYP1A2-substrate:  0.167
CYP2C19-inhibitor:  0.023
CYP2C19-substrate:  0.075
CYP2C9-inhibitor:  0.051
CYP2C9-substrate:  0.748
CYP2D6-inhibitor:  0.251
CYP2D6-substrate:  0.213
CYP3A4-inhibitor:  0.057
CYP3A4-substrate:  0.019

ADMET: Excretion

Clearance (CL):  4.593
Half-life (T1/2):  0.774

ADMET: Toxicity

hERG Blockers:  0.01
Human Hepatotoxicity (H-HT):  0.178
Drug-inuced Liver Injury (DILI):  0.978
AMES Toxicity:  0.804
Rat Oral Acute Toxicity:  0.037
Maximum Recommended Daily Dose:  0.011
Skin Sensitization:  0.668
Carcinogencity:  0.339
Eye Corrosion:  0.005
Eye Irritation:  0.289
Respiratory Toxicity:  0.045

Download Data

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  Natural Product: NPC22195

Natural Product ID:  NPC22195
Common Name*:   1,5-Dihydroxy-3-Methoxy-8-[(2R,3S,4R,5R,6S)-3,4,5-Trihydroxy-6-(Hydroxymethyl)Oxan-2-Yl]Oxyxanthen-9-One
IUPAC Name:   1,5-dihydroxy-3-methoxy-8-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyxanthen-9-one
Synonyms:  
Standard InCHIKey:  XMVBNLMKPMPWAX-DZUHBENNSA-N
Standard InCHI:  InChI=1S/C20H20O11/c1-28-7-4-9(23)13-11(5-7)29-19-8(22)2-3-10(14(19)16(13)25)30-20-18(27)17(26)15(24)12(6-21)31-20/h2-5,12,15,17-18,20-24,26-27H,6H2,1H3/t12-,15-,17+,18-,20-/m0/s1
SMILES:  COc1cc(c2c(c1)oc1c(ccc(c1c2=O)O[C@@H]1[C@H]([C@@H]([C@H]([C@H](CO)O1)O)O)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1901330
PubChem CID:   44144324
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000123] Benzopyrans
        • [CHEMONTID:0003410] 1-benzopyrans
          • [CHEMONTID:0002817] Dibenzopyrans
            • [CHEMONTID:0000200] Xanthenes
              • [CHEMONTID:0000204] Xanthones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO22457 Swertia calycina Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1002/cbdv.200490123]
NPO19705 Gentianella campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1002/hlca.19750580731]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/BF02675902]
NPO12166 Gentiana bavarica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)00303-4]
NPO12166 Gentiana bavarica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)86673-X]
NPO15376 Gentiana ramosa Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)89285-7]
NPO22601 Gentiana germanica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)89285-7]
NPO1238 Gentiana brachyphylla Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)94333-4]
NPO2806 Gentiana nivalis Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)94333-4]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1055/s-2008-1074888]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1248/cpb.30.4088]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[1002/hlca.19760590517]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[10353265]
NPO2743 Swertia purpurascens Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[1133711]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[11858759]
NPO19705 Gentianella campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[15490334]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[16499318]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[16562838]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[17524651]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[20627740]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. PMID[20718449]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[26996316]
NPO2743 Swertia purpurascens Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[4527698]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[5583807]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[931752]
NPO19705 Gentianella campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO15376 Gentiana ramosa Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO12166 Gentiana bavarica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1238 Gentiana brachyphylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28996 Caloglossa leprieurii Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2806 Gentiana nivalis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15376 Gentiana ramosa Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31193 Gentiana campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22601 Gentiana germanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22457 Swertia calycina Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12460 Gentiana japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7985 Swertia tosaensis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2743 Swertia purpurascens Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15376 Gentiana ramosa Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12460 Gentiana japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12166 Gentiana bavarica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2806 Gentiana nivalis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7985 Swertia tosaensis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28996 Caloglossa leprieurii Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2743 Swertia purpurascens Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22457 Swertia calycina Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19705 Gentianella campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1238 Gentiana brachyphylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22601 Gentiana germanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2806 Gentiana nivalis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22457 Swertia calycina Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12460 Gentiana japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO31193 Gentiana campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1238 Gentiana brachyphylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2806 Gentiana nivalis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22457 Swertia calycina Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28996 Caloglossa leprieurii Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7985 Swertia tosaensis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19705 Gentianella campestris Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29129 Rhodiola heterodonta Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15376 Gentiana ramosa Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28502 Rhabdastrella globostellata Species Ancorinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12460 Gentiana japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2743 Swertia purpurascens Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26420 Swertia perennis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1238 Gentiana brachyphylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22601 Gentiana germanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12166 Gentiana bavarica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 517.4 nM PMID[453245]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 79432.8 nM PMID[453245]
NPT2 Others Unspecified Potency n.a. 39810.7 nM PMID[453245]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC22195 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC21190
1.0 High Similarity NPC183357
0.9937 High Similarity NPC112755
0.9937 High Similarity NPC471457
0.9937 High Similarity NPC472381
0.9937 High Similarity NPC210042
0.9937 High Similarity NPC170675
0.9937 High Similarity NPC472383
0.9937 High Similarity NPC95855
0.9876 High Similarity NPC236191
0.9876 High Similarity NPC239549
0.9876 High Similarity NPC51774
0.9875 High Similarity NPC44558
0.9875 High Similarity NPC471416
0.9875 High Similarity NPC474434
0.9875 High Similarity NPC34287
0.9874 High Similarity NPC93099
0.9814 High Similarity NPC301683
0.9814 High Similarity NPC267254
0.9814 High Similarity NPC48773
0.9814 High Similarity NPC205076
0.9814 High Similarity NPC472386
0.9814 High Similarity NPC307518
0.9812 High Similarity NPC201292
0.9812 High Similarity NPC229687
0.9812 High Similarity NPC469931
0.9812 High Similarity NPC45638
0.9812 High Similarity NPC475942
0.9812 High Similarity NPC183036
0.9812 High Similarity NPC93337
0.9812 High Similarity NPC58053
0.9812 High Similarity NPC186807
0.9812 High Similarity NPC105025
0.9812 High Similarity NPC226294
0.9811 High Similarity NPC5778
0.9811 High Similarity NPC236934
0.9753 High Similarity NPC204693
0.9752 High Similarity NPC105511
0.9752 High Similarity NPC224462
0.975 High Similarity NPC45618
0.975 High Similarity NPC58716
0.975 High Similarity NPC45400
0.975 High Similarity NPC146792
0.9693 High Similarity NPC102028
0.9693 High Similarity NPC142996
0.9691 High Similarity NPC3583
0.9691 High Similarity NPC476405
0.9691 High Similarity NPC156977
0.9691 High Similarity NPC172807
0.9691 High Similarity NPC211594
0.9691 High Similarity NPC117260
0.9691 High Similarity NPC254540
0.9691 High Similarity NPC259152
0.9688 High Similarity NPC99957
0.9688 High Similarity NPC181616
0.9686 High Similarity NPC29830
0.9634 High Similarity NPC472384
0.9634 High Similarity NPC268533
0.9634 High Similarity NPC472382
0.9634 High Similarity NPC472380
0.9634 High Similarity NPC169733
0.9632 High Similarity NPC21666
0.9632 High Similarity NPC42773
0.9632 High Similarity NPC169977
0.9632 High Similarity NPC45522
0.9632 High Similarity NPC24043
0.9632 High Similarity NPC101026
0.963 High Similarity NPC84265
0.963 High Similarity NPC245014
0.963 High Similarity NPC44328
0.963 High Similarity NPC231194
0.963 High Similarity NPC105095
0.963 High Similarity NPC79056
0.963 High Similarity NPC293004
0.963 High Similarity NPC177731
0.963 High Similarity NPC51326
0.963 High Similarity NPC282987
0.9627 High Similarity NPC229729
0.9627 High Similarity NPC135345
0.9627 High Similarity NPC477502
0.9625 High Similarity NPC311830
0.9625 High Similarity NPC165720
0.9625 High Similarity NPC22832
0.9623 High Similarity NPC300537
0.9623 High Similarity NPC127782
0.9576 High Similarity NPC476623
0.9576 High Similarity NPC476621
0.9576 High Similarity NPC476620
0.9576 High Similarity NPC472387
0.9576 High Similarity NPC476618
0.9576 High Similarity NPC476619
0.9576 High Similarity NPC476622
0.9576 High Similarity NPC168584
0.9573 High Similarity NPC472607
0.9573 High Similarity NPC477848
0.9571 High Similarity NPC261254
0.9571 High Similarity NPC475155
0.9571 High Similarity NPC256760
0.9568 High Similarity NPC209296
0.9568 High Similarity NPC52382
0.9568 High Similarity NPC43587
0.9568 High Similarity NPC270578
0.9568 High Similarity NPC195257
0.9568 High Similarity NPC293629
0.9565 High Similarity NPC115674
0.9565 High Similarity NPC210073
0.9563 High Similarity NPC222936
0.9563 High Similarity NPC94777
0.9563 High Similarity NPC243930
0.9563 High Similarity NPC88023
0.9563 High Similarity NPC284960
0.9563 High Similarity NPC309025
0.9563 High Similarity NPC127415
0.9563 High Similarity NPC191306
0.9563 High Similarity NPC19709
0.9563 High Similarity NPC88043
0.9563 High Similarity NPC270335
0.9518 High Similarity NPC126784
0.9518 High Similarity NPC470443
0.9518 High Similarity NPC473571
0.9518 High Similarity NPC470444
0.9518 High Similarity NPC110941
0.9518 High Similarity NPC241423
0.9518 High Similarity NPC473682
0.9515 High Similarity NPC198324
0.9515 High Similarity NPC65563
0.9515 High Similarity NPC472385
0.9515 High Similarity NPC233994
0.9515 High Similarity NPC211532
0.9515 High Similarity NPC8573
0.9515 High Similarity NPC470949
0.9512 High Similarity NPC208668
0.9509 High Similarity NPC150767
0.9509 High Similarity NPC52353
0.9509 High Similarity NPC194483
0.9509 High Similarity NPC78734
0.9509 High Similarity NPC212748
0.9506 High Similarity NPC160156
0.9506 High Similarity NPC92565
0.9506 High Similarity NPC116745
0.95 High Similarity NPC77660
0.95 High Similarity NPC189142
0.95 High Similarity NPC473043
0.9464 High Similarity NPC148710
0.9461 High Similarity NPC473071
0.9461 High Similarity NPC473073
0.9455 High Similarity NPC264735
0.9455 High Similarity NPC135277
0.9455 High Similarity NPC49344
0.9455 High Similarity NPC101191
0.9455 High Similarity NPC210094
0.9455 High Similarity NPC108202
0.9455 High Similarity NPC237435
0.9455 High Similarity NPC115760
0.9455 High Similarity NPC43211
0.9451 High Similarity NPC235575
0.9448 High Similarity NPC203050
0.9448 High Similarity NPC219904
0.9448 High Similarity NPC471287
0.9448 High Similarity NPC61791
0.9448 High Similarity NPC225434
0.9448 High Similarity NPC223747
0.9448 High Similarity NPC105283
0.9448 High Similarity NPC86008
0.9448 High Similarity NPC120099
0.9444 High Similarity NPC8856
0.9444 High Similarity NPC21100
0.9444 High Similarity NPC70441
0.9444 High Similarity NPC197285
0.9441 High Similarity NPC470178
0.9441 High Similarity NPC168822
0.9437 High Similarity NPC182045
0.9405 High Similarity NPC470446
0.9405 High Similarity NPC470449
0.9405 High Similarity NPC470447
0.9405 High Similarity NPC473072
0.9405 High Similarity NPC470445
0.9398 High Similarity NPC257714
0.9398 High Similarity NPC472991
0.9398 High Similarity NPC472992
0.9394 High Similarity NPC4390
0.9394 High Similarity NPC172033
0.9394 High Similarity NPC175230
0.9394 High Similarity NPC88560
0.939 High Similarity NPC95866
0.939 High Similarity NPC204937
0.939 High Similarity NPC285197
0.939 High Similarity NPC218488
0.939 High Similarity NPC149011
0.939 High Similarity NPC67105
0.939 High Similarity NPC206123
0.9387 High Similarity NPC173637
0.9387 High Similarity NPC84362
0.9387 High Similarity NPC471288
0.9387 High Similarity NPC226304
0.9387 High Similarity NPC14662
0.9387 High Similarity NPC325555
0.9387 High Similarity NPC223424
0.9387 High Similarity NPC42892
0.9387 High Similarity NPC127546

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC22195 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.963 High Similarity NPD7074 Phase 3
0.9568 High Similarity NPD7054 Approved
0.9509 High Similarity NPD7472 Approved
0.9455 High Similarity NPD4338 Clinical (unspecified phase)
0.9387 High Similarity NPD3818 Discontinued
0.9333 High Similarity NPD6797 Phase 2
0.9277 High Similarity NPD7251 Discontinued
0.9222 High Similarity NPD7808 Phase 3
0.9146 High Similarity NPD6168 Clinical (unspecified phase)
0.9146 High Similarity NPD6166 Phase 2
0.9146 High Similarity NPD6167 Clinical (unspecified phase)
0.913 High Similarity NPD4381 Clinical (unspecified phase)
0.9119 High Similarity NPD1934 Approved
0.9062 High Similarity NPD2801 Approved
0.8944 High Similarity NPD2393 Clinical (unspecified phase)
0.8869 High Similarity NPD7804 Clinical (unspecified phase)
0.872 High Similarity NPD4868 Clinical (unspecified phase)
0.8675 High Similarity NPD5494 Approved
0.8606 High Similarity NPD3882 Suspended
0.8545 High Similarity NPD3817 Phase 2
0.8528 High Similarity NPD4380 Phase 2
0.85 High Similarity NPD1511 Approved
0.8497 Intermediate Similarity NPD6559 Discontinued
0.8439 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8395 Intermediate Similarity NPD1512 Approved
0.8333 Intermediate Similarity NPD7075 Discontinued
0.8324 Intermediate Similarity NPD5844 Phase 1
0.8323 Intermediate Similarity NPD5402 Approved
0.8293 Intermediate Similarity NPD1653 Approved
0.8263 Intermediate Similarity NPD1465 Phase 2
0.8239 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8187 Intermediate Similarity NPD1549 Phase 2
0.8177 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.8161 Intermediate Similarity NPD7228 Approved
0.8155 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.814 Intermediate Similarity NPD6232 Discontinued
0.811 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8107 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8103 Intermediate Similarity NPD7473 Discontinued
0.8095 Intermediate Similarity NPD6801 Discontinued
0.8081 Intermediate Similarity NPD6959 Discontinued
0.8066 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8047 Intermediate Similarity NPD7819 Suspended
0.8036 Intermediate Similarity NPD7411 Suspended
0.8012 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7989 Intermediate Similarity NPD8313 Approved
0.7989 Intermediate Similarity NPD8312 Approved
0.7978 Intermediate Similarity NPD7685 Pre-registration
0.7977 Intermediate Similarity NPD7199 Phase 2
0.7965 Intermediate Similarity NPD6234 Discontinued
0.7955 Intermediate Similarity NPD3751 Discontinued
0.795 Intermediate Similarity NPD2796 Approved
0.7939 Intermediate Similarity NPD6799 Approved
0.7931 Intermediate Similarity NPD3787 Discontinued
0.7904 Intermediate Similarity NPD5403 Approved
0.7901 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7892 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7888 Intermediate Similarity NPD1510 Phase 2
0.7882 Intermediate Similarity NPD37 Approved
0.7872 Intermediate Similarity NPD6778 Approved
0.7872 Intermediate Similarity NPD6781 Approved
0.7872 Intermediate Similarity NPD6776 Approved
0.7872 Intermediate Similarity NPD6782 Approved
0.7872 Intermediate Similarity NPD6779 Approved
0.7872 Intermediate Similarity NPD6780 Approved
0.7872 Intermediate Similarity NPD6777 Approved
0.7862 Intermediate Similarity NPD1613 Approved
0.7862 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7849 Intermediate Similarity NPD4965 Approved
0.7849 Intermediate Similarity NPD4966 Approved
0.7849 Intermediate Similarity NPD4967 Phase 2
0.7791 Intermediate Similarity NPD7266 Discontinued
0.7784 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD5401 Approved
0.7771 Intermediate Similarity NPD1247 Approved
0.7765 Intermediate Similarity NPD6599 Discontinued
0.775 Intermediate Similarity NPD1240 Approved
0.775 Intermediate Similarity NPD943 Approved
0.7749 Intermediate Similarity NPD7435 Discontinued
0.7749 Intermediate Similarity NPD7696 Phase 3
0.7749 Intermediate Similarity NPD7697 Approved
0.7749 Intermediate Similarity NPD7698 Approved
0.7744 Intermediate Similarity NPD7783 Phase 2
0.7744 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7732 Intermediate Similarity NPD8151 Discontinued
0.7725 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7684 Intermediate Similarity NPD3926 Phase 2
0.768 Intermediate Similarity NPD7240 Approved
0.768 Intermediate Similarity NPD7701 Phase 2
0.7673 Intermediate Similarity NPD3027 Phase 3
0.7654 Intermediate Similarity NPD1607 Approved
0.7651 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.763 Intermediate Similarity NPD8455 Phase 2
0.7629 Intermediate Similarity NPD7584 Approved
0.7622 Intermediate Similarity NPD2935 Discontinued
0.7617 Intermediate Similarity NPD7871 Phase 2
0.7617 Intermediate Similarity NPD7870 Phase 2
0.761 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7606 Intermediate Similarity NPD6534 Approved
0.7606 Intermediate Similarity NPD6535 Approved
0.7605 Intermediate Similarity NPD6190 Approved
0.7604 Intermediate Similarity NPD6823 Phase 2
0.76 Intermediate Similarity NPD3749 Approved
0.7593 Intermediate Similarity NPD230 Phase 1
0.7593 Intermediate Similarity NPD1933 Approved
0.7579 Intermediate Similarity NPD7700 Phase 2
0.7579 Intermediate Similarity NPD7699 Phase 2
0.7557 Intermediate Similarity NPD919 Approved
0.7547 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7545 Intermediate Similarity NPD4628 Phase 3
0.7545 Intermediate Similarity NPD3750 Approved
0.7543 Intermediate Similarity NPD7768 Phase 2
0.753 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7513 Intermediate Similarity NPD7874 Approved
0.7513 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD447 Suspended
0.7475 Intermediate Similarity NPD7801 Approved
0.7471 Intermediate Similarity NPD2532 Approved
0.7471 Intermediate Similarity NPD2533 Approved
0.7471 Intermediate Similarity NPD2534 Approved
0.741 Intermediate Similarity NPD1551 Phase 2
0.7409 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD2800 Approved
0.7381 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD6213 Phase 3
0.7368 Intermediate Similarity NPD6212 Phase 3
0.7358 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD5953 Discontinued
0.7299 Intermediate Similarity NPD3226 Approved
0.7296 Intermediate Similarity NPD7680 Approved
0.7287 Intermediate Similarity NPD8434 Phase 2
0.7287 Intermediate Similarity NPD8150 Discontinued
0.7283 Intermediate Similarity NPD920 Approved
0.7278 Intermediate Similarity NPD6674 Discontinued
0.7273 Intermediate Similarity NPD6844 Discontinued
0.7267 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7259 Intermediate Similarity NPD8320 Phase 1
0.7259 Intermediate Similarity NPD8319 Approved
0.7254 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD3748 Approved
0.7236 Intermediate Similarity NPD7585 Approved
0.7228 Intermediate Similarity NPD7286 Phase 2
0.7222 Intermediate Similarity NPD9494 Approved
0.7202 Intermediate Similarity NPD6100 Approved
0.7202 Intermediate Similarity NPD6099 Approved
0.72 Intermediate Similarity NPD7458 Discontinued
0.7186 Intermediate Similarity NPD7583 Approved
0.7178 Intermediate Similarity NPD4908 Phase 1
0.717 Intermediate Similarity NPD1091 Approved
0.7168 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7166 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD2346 Discontinued
0.716 Intermediate Similarity NPD2344 Approved
0.715 Intermediate Similarity NPD4360 Phase 2
0.715 Intermediate Similarity NPD4363 Phase 3
0.715 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD2799 Discontinued
0.7143 Intermediate Similarity NPD7033 Discontinued
0.7126 Intermediate Similarity NPD6651 Approved
0.711 Intermediate Similarity NPD7390 Discontinued
0.7104 Intermediate Similarity NPD5242 Approved
0.7095 Intermediate Similarity NPD5353 Approved
0.7091 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD2313 Discontinued
0.7081 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7081 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.7076 Intermediate Similarity NPD1243 Approved
0.7073 Intermediate Similarity NPD6832 Phase 2
0.7071 Intermediate Similarity NPD5005 Approved
0.7071 Intermediate Similarity NPD5006 Approved
0.7069 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7055 Intermediate Similarity NPD2798 Approved
0.7052 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.705 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7049 Intermediate Similarity NPD5710 Approved
0.7049 Intermediate Similarity NPD5711 Approved
0.7048 Intermediate Similarity NPD6233 Phase 2
0.7041 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7035 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7022 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7012 Intermediate Similarity NPD2861 Phase 2
0.7006 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.6995 Remote Similarity NPD8127 Discontinued
0.6994 Remote Similarity NPD1203 Approved
0.6994 Remote Similarity NPD2309 Approved
0.6988 Remote Similarity NPD6798 Discontinued
0.6984 Remote Similarity NPD7549 Discontinued
0.6981 Remote Similarity NPD8059 Phase 3
0.6981 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6979 Remote Similarity NPD6842 Approved
0.6979 Remote Similarity NPD6841 Approved
0.6979 Remote Similarity NPD6843 Phase 3
0.6977 Remote Similarity NPD1652 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data