Structure

Physi-Chem Properties

Molecular Weight:  280.15
Volume:  316.556
LogP:  5.254
LogD:  3.921
LogS:  -5.637
# Rotatable Bonds:  6
TPSA:  29.46
# H-Bond Aceptor:  2
# H-Bond Donor:  1
# Rings:  2
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.788
Synthetic Accessibility Score:  2.334
Fsp3:  0.158
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.598
MDCK Permeability:  2.4499235223629512e-05
Pgp-inhibitor:  0.997
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.005
20% Bioavailability (F20%):  0.768
30% Bioavailability (F30%):  0.982

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.113
Plasma Protein Binding (PPB):  101.01541137695312%
Volume Distribution (VD):  0.519
Pgp-substrate:  0.6678239107131958%

ADMET: Metabolism

CYP1A2-inhibitor:  0.974
CYP1A2-substrate:  0.832
CYP2C19-inhibitor:  0.923
CYP2C19-substrate:  0.107
CYP2C9-inhibitor:  0.76
CYP2C9-substrate:  0.9
CYP2D6-inhibitor:  0.946
CYP2D6-substrate:  0.955
CYP3A4-inhibitor:  0.856
CYP3A4-substrate:  0.426

ADMET: Excretion

Clearance (CL):  9.828
Half-life (T1/2):  0.353

ADMET: Toxicity

hERG Blockers:  0.023
Human Hepatotoxicity (H-HT):  0.029
Drug-inuced Liver Injury (DILI):  0.068
AMES Toxicity:  0.247
Rat Oral Acute Toxicity:  0.049
Maximum Recommended Daily Dose:  0.657
Skin Sensitization:  0.902
Carcinogencity:  0.58
Eye Corrosion:  0.004
Eye Irritation:  0.727
Respiratory Toxicity:  0.036

Download Data

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General Info & Identifiers & Properties  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC35344

Natural Product ID:  NPC35344
Common Name*:   Methylhonokiol
IUPAC Name:   2-(4-methoxy-3-prop-2-enylphenyl)-4-prop-2-enylphenol
Synonyms:   4'-O-Methylhonokiol; 4-Methoxyhonokiol; 4-O-Methylhonokiol; Methylhonokiol
Standard InCHIKey:  OQFHJKZVOALSPV-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C19H20O2/c1-4-6-14-8-10-18(20)17(12-14)15-9-11-19(21-3)16(13-15)7-5-2/h4-5,8-13,20H,1-2,6-7H2,3H3
SMILES:  C=CCc1ccc(c(c1)c1ccc(c(c1)CC=C)OC)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL89700
PubChem CID:   155160
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0002279] Benzene and substituted derivatives
        • [CHEMONTID:0000041] Biphenyls and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[10479314]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[10650079]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota stems n.a. n.a. PMID[1517737]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. aerial part n.a. PMID[15577228]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota roots n.a. n.a. PMID[15969497]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[16441070]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[1659613]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota stem bark n.a. n.a. PMID[17918910]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. stem n.a. PMID[18175990]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota Stems; Barks n.a. n.a. PMID[19086868]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. PMID[22085682]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[22672802]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. bark n.a. PMID[23823874]
NPO13745 Gynoxys verrucosa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[27057812]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[27997206]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[28485933]
NPO6698 Euphorbia pithyusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[28671832]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. root n.a. PMID[9987830]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO10532 Pinus edulis Species Pinaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO10532 Pinus edulis Species Pinaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3482 Alpinia flabellata Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17166 Euphorbia palustris Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10532 Pinus edulis Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15514 Pedicularis rex Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27148 Chuquiraga erinacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13745 Gynoxys verrucosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25118 Centaurea benedicta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO273 Phyllobates bicolor Species Dendrobatidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5998 Echinoclathria subhispida Species Microcionidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14329 Sigillina signifera Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11246 Ononis viscosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14455 Triunia erythrocarpa Species Proteaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15405 Suaeda maritima Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18026 Bipolaris sacchari Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2568 Posidonia oceanica Species Posidoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12018 Alternaria bataticola Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17166 Euphorbia palustris Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13617 Eria rigida Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3482 Alpinia flabellata Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11592 Cuphea hyssopifolia Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4282 Fouquieria diguetii Species Fouquieriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2043 Pseudocyphellaria coronata Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2680 Holothuria squamifera Species Holothuriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9538 Pterocarpus erinaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10905 Baccharis truncata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7009 Callyspongia spinosissima Species Callyspongiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14194 Mamestra brassicae Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2070 Thioalkalivibrio versutus Species Ectothiorhodospiraceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO8721 Parectatosoma mocquerysi Species Anisacanthidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15992 Hypogymnia vittata Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17358 Sorbus torminalis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10048 Pyrus bourgaeana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6698 Euphorbia pithyusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell Line HeLa Homo sapiens IC50 > 5.0 ug.mL-1 PMID[541332]
NPT81 Cell Line A549 Homo sapiens IC50 > 5.0 ug.mL-1 PMID[541332]
NPT111 Cell Line K562 Homo sapiens IC50 > 5.0 ug.mL-1 PMID[541332]
NPT324 Individual Protein Cyclooxygenase-1 Ovis aries Inhibition = 90.8 % PMID[541333]
NPT325 Individual Protein Cyclooxygenase-2 Ovis aries Inhibition = 95.3 % PMID[541333]
NPT324 Individual Protein Cyclooxygenase-1 Ovis aries IC50 = 100.0 nM PMID[541333]
NPT325 Individual Protein Cyclooxygenase-2 Ovis aries IC50 = 60.0 nM PMID[541333]
NPT570 Individual Protein Arachidonate 5-lipoxygenase Homo sapiens Inhibition = 96.4 % PMID[541333]
NPT570 Individual Protein Arachidonate 5-lipoxygenase Homo sapiens IC50 = 1500.0 nM PMID[541333]
NPT737 Cell Line HUVEC Homo sapiens IC50 = 55800.0 nM PMID[541335]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 55300.0 nM PMID[541335]
NPT737 Cell Line HUVEC Homo sapiens Activity = 54.2 % PMID[541335]
NPT737 Cell Line HUVEC Homo sapiens Inhibition = 34.9 % PMID[541335]
NPT581 Individual Protein Cyclooxygenase-2 Mus musculus Inhibition = 42.0 % PMID[541336]
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 18000.0 nM PMID[541336]
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 27000.0 nM PMID[541336]
NPT31 Individual Protein Cyclooxygenase-2 Homo sapiens Inhibition = 57.0 % PMID[541336]
NPT2644 Cell Line UACC-903 Homo sapiens IC50 = 37680.0 nM PMID[541337]
NPT2644 Cell Line UACC-903 Homo sapiens IC50 = 24130.0 nM PMID[541337]
NPT81 Cell Line A549 Homo sapiens IC50 = 1560.0 nM PMID[541337]
NPT81 Cell Line A549 Homo sapiens IC50 = 1240.0 nM PMID[541337]
NPT139 Cell Line HT-29 Homo sapiens IC50 = 22450.0 nM PMID[541337]
NPT139 Cell Line HT-29 Homo sapiens IC50 = 14130.0 nM PMID[541337]
NPT1287 Individual Protein Cannabinoid CB2 receptor Homo sapiens Ki = 44.0 nM PMID[541338]
NPT34 Cell Line BV-2 Mus musculus Activity = 115.1 % PMID[541341]
NPT34 Cell Line BV-2 Mus musculus IC50 = 52300.0 nM PMID[541341]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 24710.0 nM PMID[541343]
NPT81 Cell Line A549 Homo sapiens IC50 = 21970.0 nM PMID[541344]
NPT179 Cell Line A2780 Homo sapiens IC50 = 14670.0 nM PMID[541344]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 17470.0 nM PMID[541344]
NPT139 Cell Line HT-29 Homo sapiens IC50 = 21070.0 nM PMID[541344]
NPT461 Cell Line PANC-1 Homo sapiens IC50 = 16730.0 nM PMID[541344]
NPT306 Cell Line PC-3 Homo sapiens IC50 = 17870.0 nM PMID[541344]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 113.1 uM PMID[541331]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 114.4 uM PMID[541331]
NPT2643 Protein Complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens Activity = 822.0 % PMID[541334]
NPT2643 Protein Complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens Smax = 1532.0 % PMID[541334]
NPT2643 Protein Complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens EC50 = 27200.0 nM PMID[541334]
NPT35 Others n.a. LogP = 5.43 n.a. PMID[541334]
NPT617 Organism Danio rerio Danio rerio Inhibition < 25.0 % PMID[541335]
NPT617 Organism Danio rerio Danio rerio Inhibition = 25.0 % PMID[541335]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 68800.0 nM PMID[541335]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 14320.0 nM PMID[541339]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 8180.0 nM PMID[541339]
NPT35 Others n.a. LogP = 5.07 n.a. PMID[541342]
NPT22964 CELL-LINE CNE2Z Homo sapiens IC50 = 25530.0 nM PMID[541343]
NPT21742 CELL-LINE L02 Homo sapiens IC50 = 23940.0 nM PMID[541344]
NPT27094 CELL-LINE I10 Mus musculus IC50 = 26540.0 nM PMID[541343]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC35344 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC141003
0.934 High Similarity NPC201959
0.9333 High Similarity NPC113457
0.9292 High Similarity NPC131868
0.9211 High Similarity NPC251259
0.9159 High Similarity NPC75440
0.9123 High Similarity NPC129176
0.9057 High Similarity NPC138942
0.9048 High Similarity NPC168829
0.9035 High Similarity NPC103916
0.9027 High Similarity NPC131118
0.8966 High Similarity NPC150026
0.8962 High Similarity NPC288411
0.8952 High Similarity NPC300166
0.8879 High Similarity NPC476633
0.886 High Similarity NPC63010
0.885 High Similarity NPC229147
0.885 High Similarity NPC54507
0.885 High Similarity NPC85292
0.8807 High Similarity NPC262365
0.8785 High Similarity NPC474603
0.8785 High Similarity NPC12987
0.8761 High Similarity NPC464
0.8761 High Similarity NPC185541
0.875 High Similarity NPC21563
0.8739 High Similarity NPC81641
0.8739 High Similarity NPC105031
0.8727 High Similarity NPC474272
0.8667 High Similarity NPC170485
0.8661 High Similarity NPC98372
0.8649 High Similarity NPC296683
0.8649 High Similarity NPC44732
0.8632 High Similarity NPC100108
0.8632 High Similarity NPC102639
0.8632 High Similarity NPC277798
0.8624 High Similarity NPC271274
0.8621 High Similarity NPC281298
0.8621 High Similarity NPC310338
0.8609 High Similarity NPC244816
0.8609 High Similarity NPC50521
0.8609 High Similarity NPC195466
0.8609 High Similarity NPC33270
0.8609 High Similarity NPC221549
0.8609 High Similarity NPC69261
0.8609 High Similarity NPC25648
0.8609 High Similarity NPC474933
0.8596 High Similarity NPC808
0.8596 High Similarity NPC283169
0.8583 High Similarity NPC133407
0.8583 High Similarity NPC28476
0.8571 High Similarity NPC275627
0.8571 High Similarity NPC95716
0.8571 High Similarity NPC308689
0.8547 High Similarity NPC95614
0.8547 High Similarity NPC56214
0.8547 High Similarity NPC242885
0.8547 High Similarity NPC232316
0.8547 High Similarity NPC117780
0.8547 High Similarity NPC165133
0.8547 High Similarity NPC227217
0.8545 High Similarity NPC233320
0.8537 High Similarity NPC143483
0.8537 High Similarity NPC245395
0.8534 High Similarity NPC470626
0.8534 High Similarity NPC190514
0.8532 High Similarity NPC233396
0.8532 High Similarity NPC154899
0.8525 High Similarity NPC38664
0.8525 High Similarity NPC472968
0.8525 High Similarity NPC53986
0.8525 High Similarity NPC215300
0.8522 High Similarity NPC141090
0.8522 High Similarity NPC150624
0.8509 High Similarity NPC12656
0.8505 High Similarity NPC225506
0.85 High Similarity NPC197351
0.85 High Similarity NPC106914
0.85 High Similarity NPC228503
0.85 High Similarity NPC246648
0.85 High Similarity NPC138248
0.85 High Similarity NPC134195
0.85 High Similarity NPC61685
0.85 High Similarity NPC86502
0.8496 Intermediate Similarity NPC46940
0.8496 Intermediate Similarity NPC228988
0.8496 Intermediate Similarity NPC199462
0.8491 Intermediate Similarity NPC77492
0.8487 Intermediate Similarity NPC30462
0.8487 Intermediate Similarity NPC152946
0.8476 Intermediate Similarity NPC26244
0.8468 Intermediate Similarity NPC282508
0.8462 Intermediate Similarity NPC184302
0.8455 Intermediate Similarity NPC92623
0.8455 Intermediate Similarity NPC93962
0.8455 Intermediate Similarity NPC135464
0.8455 Intermediate Similarity NPC54765
0.8448 Intermediate Similarity NPC293619
0.8443 Intermediate Similarity NPC53781
0.8443 Intermediate Similarity NPC473221
0.844 Intermediate Similarity NPC241224
0.8435 Intermediate Similarity NPC53906
0.8435 Intermediate Similarity NPC473718
0.8435 Intermediate Similarity NPC167934
0.843 Intermediate Similarity NPC17809
0.843 Intermediate Similarity NPC4286
0.843 Intermediate Similarity NPC103420
0.843 Intermediate Similarity NPC76119
0.843 Intermediate Similarity NPC105718
0.843 Intermediate Similarity NPC278955
0.843 Intermediate Similarity NPC188022
0.843 Intermediate Similarity NPC102540
0.843 Intermediate Similarity NPC285040
0.843 Intermediate Similarity NPC113495
0.8421 Intermediate Similarity NPC123175
0.8421 Intermediate Similarity NPC176730
0.8417 Intermediate Similarity NPC474160
0.8411 Intermediate Similarity NPC252821
0.8411 Intermediate Similarity NPC92730
0.8411 Intermediate Similarity NPC100870
0.8411 Intermediate Similarity NPC122005
0.8411 Intermediate Similarity NPC128723
0.8407 Intermediate Similarity NPC470723
0.8403 Intermediate Similarity NPC38996
0.8403 Intermediate Similarity NPC160380
0.8396 Intermediate Similarity NPC216520
0.8396 Intermediate Similarity NPC473388
0.8396 Intermediate Similarity NPC292730
0.8396 Intermediate Similarity NPC132271
0.8396 Intermediate Similarity NPC82664
0.8393 Intermediate Similarity NPC58865
0.8387 Intermediate Similarity NPC254000
0.8381 Intermediate Similarity NPC151715
0.8381 Intermediate Similarity NPC128062
0.8376 Intermediate Similarity NPC474040
0.8374 Intermediate Similarity NPC23012
0.8374 Intermediate Similarity NPC274717
0.8374 Intermediate Similarity NPC38017
0.8364 Intermediate Similarity NPC470393
0.8364 Intermediate Similarity NPC99557
0.8364 Intermediate Similarity NPC219286
0.8362 Intermediate Similarity NPC19290
0.8362 Intermediate Similarity NPC312105
0.8362 Intermediate Similarity NPC69539
0.8362 Intermediate Similarity NPC203113
0.8361 Intermediate Similarity NPC230479
0.8361 Intermediate Similarity NPC283049
0.8361 Intermediate Similarity NPC82299
0.8361 Intermediate Similarity NPC276212
0.8361 Intermediate Similarity NPC26879
0.8361 Intermediate Similarity NPC50315
0.8361 Intermediate Similarity NPC223953
0.8348 Intermediate Similarity NPC161696
0.8348 Intermediate Similarity NPC22610
0.8348 Intermediate Similarity NPC473137
0.8348 Intermediate Similarity NPC180508
0.8348 Intermediate Similarity NPC228287
0.8348 Intermediate Similarity NPC276737
0.8333 Intermediate Similarity NPC100099
0.8333 Intermediate Similarity NPC228425
0.8333 Intermediate Similarity NPC36016
0.8333 Intermediate Similarity NPC170185
0.8333 Intermediate Similarity NPC286222
0.8333 Intermediate Similarity NPC85488
0.832 Intermediate Similarity NPC150011
0.832 Intermediate Similarity NPC118114
0.832 Intermediate Similarity NPC211413
0.832 Intermediate Similarity NPC207892
0.832 Intermediate Similarity NPC164574
0.832 Intermediate Similarity NPC268917
0.832 Intermediate Similarity NPC12875
0.832 Intermediate Similarity NPC129784
0.832 Intermediate Similarity NPC17343
0.832 Intermediate Similarity NPC244888
0.832 Intermediate Similarity NPC68205
0.832 Intermediate Similarity NPC236014
0.832 Intermediate Similarity NPC129106
0.832 Intermediate Similarity NPC476166
0.832 Intermediate Similarity NPC280653
0.832 Intermediate Similarity NPC293203
0.832 Intermediate Similarity NPC118683
0.832 Intermediate Similarity NPC15543
0.832 Intermediate Similarity NPC164804
0.832 Intermediate Similarity NPC196765
0.832 Intermediate Similarity NPC300875
0.832 Intermediate Similarity NPC228369
0.832 Intermediate Similarity NPC206224
0.8319 Intermediate Similarity NPC473809
0.8319 Intermediate Similarity NPC475852
0.8319 Intermediate Similarity NPC207613
0.8318 Intermediate Similarity NPC225464
0.8306 Intermediate Similarity NPC134360
0.8305 Intermediate Similarity NPC32152
0.8304 Intermediate Similarity NPC95344
0.8304 Intermediate Similarity NPC61885
0.8304 Intermediate Similarity NPC63698
0.8302 Intermediate Similarity NPC8392
0.8293 Intermediate Similarity NPC46978
0.8293 Intermediate Similarity NPC149796
0.8293 Intermediate Similarity NPC252131
0.8291 Intermediate Similarity NPC15860

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC35344 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8889 High Similarity NPD3600 Clinical (unspecified phase)
0.8585 High Similarity NPD3020 Approved
0.8476 Intermediate Similarity NPD2859 Approved
0.8476 Intermediate Similarity NPD2860 Approved
0.839 Intermediate Similarity NPD4626 Approved
0.8387 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.8381 Intermediate Similarity NPD2934 Approved
0.8381 Intermediate Similarity NPD2933 Approved
0.8276 Intermediate Similarity NPD6671 Approved
0.8261 Intermediate Similarity NPD5283 Phase 1
0.8254 Intermediate Similarity NPD4060 Phase 1
0.825 Intermediate Similarity NPD1610 Phase 2
0.823 Intermediate Similarity NPD5451 Approved
0.8226 Intermediate Similarity NPD4908 Phase 1
0.816 Intermediate Similarity NPD4625 Phase 3
0.8151 Intermediate Similarity NPD1651 Approved
0.8145 Intermediate Similarity NPD2861 Phase 2
0.8142 Intermediate Similarity NPD2684 Approved
0.8131 Intermediate Similarity NPD1809 Phase 2
0.8125 Intermediate Similarity NPD968 Approved
0.8115 Intermediate Similarity NPD1669 Approved
0.8113 Intermediate Similarity NPD845 Approved
0.8087 Intermediate Similarity NPD228 Approved
0.8083 Intermediate Similarity NPD2667 Approved
0.8083 Intermediate Similarity NPD2668 Approved
0.8067 Intermediate Similarity NPD1548 Phase 1
0.8049 Intermediate Similarity NPD1283 Approved
0.8037 Intermediate Similarity NPD1432 Clinical (unspecified phase)
0.8017 Intermediate Similarity NPD7635 Approved
0.8 Intermediate Similarity NPD5691 Approved
0.7967 Intermediate Similarity NPD6583 Phase 3
0.7967 Intermediate Similarity NPD6582 Phase 2
0.7966 Intermediate Similarity NPD6387 Discontinued
0.7966 Intermediate Similarity NPD7157 Approved
0.7966 Intermediate Similarity NPD709 Approved
0.792 Intermediate Similarity NPD6584 Phase 3
0.7913 Intermediate Similarity NPD3021 Approved
0.7913 Intermediate Similarity NPD3022 Approved
0.7895 Intermediate Similarity NPD2342 Discontinued
0.7886 Intermediate Similarity NPD2233 Approved
0.7886 Intermediate Similarity NPD2232 Approved
0.7886 Intermediate Similarity NPD2230 Approved
0.7869 Intermediate Similarity NPD3847 Discontinued
0.7863 Intermediate Similarity NPD5535 Approved
0.7863 Intermediate Similarity NPD1138 Approved
0.7863 Intermediate Similarity NPD7843 Approved
0.7846 Intermediate Similarity NPD4097 Suspended
0.7805 Intermediate Similarity NPD1281 Approved
0.7803 Intermediate Similarity NPD2935 Discontinued
0.7798 Intermediate Similarity NPD844 Approved
0.7778 Intermediate Similarity NPD4624 Approved
0.7778 Intermediate Similarity NPD3691 Phase 2
0.7778 Intermediate Similarity NPD1137 Approved
0.7778 Intermediate Similarity NPD1139 Approved
0.7778 Intermediate Similarity NPD3690 Phase 2
0.7768 Intermediate Similarity NPD940 Approved
0.7768 Intermediate Similarity NPD846 Approved
0.776 Intermediate Similarity NPD8651 Approved
0.7739 Intermediate Similarity NPD290 Approved
0.7734 Intermediate Similarity NPD3027 Phase 3
0.7727 Intermediate Similarity NPD288 Approved
0.7712 Intermediate Similarity NPD821 Approved
0.7705 Intermediate Similarity NPD3445 Approved
0.7705 Intermediate Similarity NPD3443 Approved
0.7705 Intermediate Similarity NPD3444 Approved
0.7704 Intermediate Similarity NPD7003 Approved
0.7698 Intermediate Similarity NPD2797 Approved
0.768 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.768 Intermediate Similarity NPD4749 Approved
0.7679 Intermediate Similarity NPD289 Clinical (unspecified phase)
0.7669 Intermediate Similarity NPD4476 Approved
0.7669 Intermediate Similarity NPD4477 Approved
0.7667 Intermediate Similarity NPD2557 Approved
0.7661 Intermediate Similarity NPD1611 Approved
0.7647 Intermediate Similarity NPD1398 Phase 1
0.7642 Intermediate Similarity NPD4589 Approved
0.7642 Intermediate Similarity NPD6516 Phase 2
0.7642 Intermediate Similarity NPD5846 Approved
0.7638 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7634 Intermediate Similarity NPD6355 Discontinued
0.7627 Intermediate Similarity NPD6124 Clinical (unspecified phase)
0.7623 Intermediate Similarity NPD5304 Approved
0.7623 Intermediate Similarity NPD5303 Approved
0.7619 Intermediate Similarity NPD6696 Suspended
0.7603 Intermediate Similarity NPD7340 Approved
0.7603 Intermediate Similarity NPD3596 Phase 2
0.7594 Intermediate Similarity NPD2799 Discontinued
0.7557 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7557 Intermediate Similarity NPD3620 Phase 2
0.7557 Intermediate Similarity NPD5837 Clinical (unspecified phase)
0.754 Intermediate Similarity NPD5327 Phase 3
0.7538 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7538 Intermediate Similarity NPD6798 Discontinued
0.7536 Intermediate Similarity NPD7040 Clinical (unspecified phase)
0.7536 Intermediate Similarity NPD7041 Phase 2
0.7524 Intermediate Similarity NPD111 Approved
0.752 Intermediate Similarity NPD422 Phase 1
0.7519 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2229 Approved
0.75 Intermediate Similarity NPD2234 Approved
0.75 Intermediate Similarity NPD2228 Approved
0.75 Intermediate Similarity NPD7159 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD3134 Approved
0.75 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2798 Approved
0.7481 Intermediate Similarity NPD2344 Approved
0.748 Intermediate Similarity NPD1894 Discontinued
0.748 Intermediate Similarity NPD6581 Approved
0.748 Intermediate Similarity NPD6580 Approved
0.748 Intermediate Similarity NPD3091 Approved
0.7464 Intermediate Similarity NPD6666 Approved
0.7464 Intermediate Similarity NPD6667 Approved
0.7463 Intermediate Similarity NPD4108 Discontinued
0.7462 Intermediate Similarity NPD7095 Approved
0.746 Intermediate Similarity NPD3972 Approved
0.7458 Intermediate Similarity NPD4750 Phase 3
0.7444 Intermediate Similarity NPD2157 Approved
0.7442 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.744 Intermediate Similarity NPD3496 Discontinued
0.7424 Intermediate Similarity NPD2979 Phase 3
0.7424 Intermediate Similarity NPD1240 Approved
0.7424 Intermediate Similarity NPD1613 Approved
0.7424 Intermediate Similarity NPD2238 Phase 2
0.7424 Intermediate Similarity NPD4140 Approved
0.7424 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7419 Intermediate Similarity NPD6830 Clinical (unspecified phase)
0.7419 Intermediate Similarity NPD3049 Approved
0.7407 Intermediate Similarity NPD9295 Approved
0.7405 Intermediate Similarity NPD3268 Approved
0.7405 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7398 Intermediate Similarity NPD5536 Phase 2
0.7388 Intermediate Similarity NPD4536 Approved
0.7388 Intermediate Similarity NPD4537 Clinical (unspecified phase)
0.7388 Intermediate Similarity NPD4538 Approved
0.7381 Intermediate Similarity NPD1535 Discovery
0.7372 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD1242 Phase 1
0.7368 Intermediate Similarity NPD5735 Approved
0.7368 Intermediate Similarity NPD3028 Approved
0.736 Intermediate Similarity NPD2286 Discontinued
0.7357 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7344 Intermediate Similarity NPD1876 Approved
0.7333 Intermediate Similarity NPD3846 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD1608 Approved
0.7323 Intermediate Similarity NPD1481 Phase 2
0.7323 Intermediate Similarity NPD2235 Phase 2
0.7323 Intermediate Similarity NPD2231 Phase 2
0.7317 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.7313 Intermediate Similarity NPD6353 Approved
0.7313 Intermediate Similarity NPD1607 Approved
0.7313 Intermediate Similarity NPD4579 Clinical (unspecified phase)
0.7308 Intermediate Similarity NPD3018 Phase 2
0.7299 Intermediate Similarity NPD7037 Approved
0.7293 Intermediate Similarity NPD3597 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD1358 Approved
0.728 Intermediate Similarity NPD1357 Approved
0.728 Intermediate Similarity NPD5585 Approved
0.728 Intermediate Similarity NPD4093 Discontinued
0.7273 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.7266 Intermediate Similarity NPD3685 Discontinued
0.7266 Intermediate Similarity NPD2309 Approved
0.7266 Intermediate Similarity NPD3676 Clinical (unspecified phase)
0.7244 Intermediate Similarity NPD3092 Approved
0.7241 Intermediate Similarity NPD5700 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD7030 Discontinued
0.7222 Intermediate Similarity NPD2556 Approved
0.7222 Intermediate Similarity NPD3019 Approved
0.7222 Intermediate Similarity NPD2932 Approved
0.7222 Intermediate Similarity NPD1778 Approved
0.7222 Intermediate Similarity NPD4059 Approved
0.7222 Intermediate Similarity NPD5617 Suspended
0.7222 Intermediate Similarity NPD2554 Approved
0.7218 Intermediate Similarity NPD7477 Discontinued
0.7213 Intermediate Similarity NPD594 Approved
0.7213 Intermediate Similarity NPD592 Approved
0.7213 Intermediate Similarity NPD1241 Discontinued
0.7209 Intermediate Similarity NPD7258 Clinical (unspecified phase)
0.7206 Intermediate Similarity NPD1510 Phase 2
0.7206 Intermediate Similarity NPD5960 Phase 3
0.7206 Intermediate Similarity NPD5588 Approved
0.72 Intermediate Similarity NPD1182 Approved
0.72 Intermediate Similarity NPD7330 Discontinued
0.72 Intermediate Similarity NPD2486 Discontinued
0.7197 Intermediate Similarity NPD5163 Phase 2
0.7194 Intermediate Similarity NPD6331 Phase 2
0.7188 Intermediate Similarity NPD1840 Phase 2
0.7185 Intermediate Similarity NPD3052 Approved
0.7185 Intermediate Similarity NPD3054 Approved
0.7176 Intermediate Similarity NPD1712 Approved
0.7174 Intermediate Similarity NPD2424 Discontinued
0.7167 Intermediate Similarity NPD1792 Phase 2
0.7154 Intermediate Similarity NPD1164 Approved
0.7154 Intermediate Similarity NPD497 Approved
0.7153 Intermediate Similarity NPD7458 Discontinued
0.7153 Intermediate Similarity NPD2531 Phase 2
0.7153 Intermediate Similarity NPD2438 Suspended
0.7143 Intermediate Similarity NPD2313 Discontinued
0.7143 Intermediate Similarity NPD5110 Phase 2
0.7143 Intermediate Similarity NPD5111 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data