Natural Product: NPC168829

Natural Product IDNPC168829
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Honokiol
IUPAC Name 2-(4-hydroxy-3-prop-2-enylphenyl)-4-prop-2-enylphenol
Synonyms Honokiol
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL16901
PubChem CID 72303
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0002279] Benzene and substituted derivatives
        • [CHEMONTID:0000041] Biphenyls and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FVYXIJYOAGAUQK-UHFFFAOYSA-N
Standard InCHI InChI=1S/C18H18O2/c1-3-5-13-7-9-18(20)16(11-13)14-8-10-17(19)15(12-14)6-4-2/h3-4,7-12,19-20H,1-2,5-6H2
SMILES C=CCc1ccc(c(c1)c1ccc(c(c1)CC=C)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   266.13 Volume:   299.26
?
Van der Waals volume.
Dense:   0.889 LogP:   3.802
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.462
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.488
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   5.0 Rigid Bonds:   14.0
TPSA:   40.46
?
Topological Polar Surface Area.
H-Bond Acceptor:   2.0
H-Bond Donor:   2.0 Rings:   2.0
Heavy Atoms:   2.0

MedChem Properties

QED Drug-Likeness Score:   0.795 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   2.442 Fsp3:   0.111
MCE-18:   12.0
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.92 Fluc inhibitor:   0.624
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.662
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.363
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.942 Promiscuous compounds:   0.164

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.611 MDCK Permeability:   -4.672
Pgp-inhibitor:   0.592 Pgp-substrate:   0.0
PAMPA:   0.001
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.025
20% Bioavailability (F20%):   1.0 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.052
Plasma Protein Binding (PPB):   93.355% Volume Distribution (VD):   0.328
Fu: 10.14%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.974
BSEP inhibitor:   1.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.99
CYP2C19-inhibitor:   0.066 CYP2C19-substrate:   0.054
CYP2C9-inhibitor:   1.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   1.0 CYP2D6-substrate:   0.998
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   1.0
CYP2B6-substrate:   0.422 CYP2C8-inhibitor:   1.0
HLM stability:   0.079
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  13.722 Half-life (T1/2):  1.054

ADMET: Toxicity

hERG Blockers:  0.11 hERG Blockers (10um):  0.763
Human Hepatotoxicity (H-HT):  0.382 Drug-induced Liver Injury (DILI):  0.481
AMES Toxicity:  0.504 Rat Oral Acute Toxicity:  0.627
Maximum Recommended Daily Dose:  0.678 Skin Sensitization:  0.949
Carcinogencity:  0.505 Eye Corrosion:  0.377
Eye Irritation:  0.986 Respiratory Toxicity:  0.973
Drug-induced Neurotoxicity:  0.648 Ototoxicity:  0.195
Hematotoxicity:  0.057 Drug-induced Nephrotoxicity:  0.15
Genotoxicity:  0.705 RPMI-8226 Immunitoxicity:  0.083
A549 Cytotoxicity:  0.542 Hek293 Cytotoxicity:  0.733
BCF:   1.346
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.795
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.573
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.109
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[10479314]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[10650079]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. tuber n.a. PMID[12913245]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[1293938]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota stems n.a. n.a. PMID[1517737]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. aerial part n.a. PMID[15577228]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota roots n.a. n.a. PMID[15969497]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[16181762]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[16441070]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[1659613]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota stem bark n.a. n.a. PMID[17918910]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota roots n.a. n.a. PMID[18044843]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. stem n.a. PMID[18175990]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota Stems; Barks n.a. n.a. PMID[19086868]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. PMID[22085682]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[22223386]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota Lateral roots n.a. n.a. PMID[22607495]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[22628040]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[22672802]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[22907155]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[23225552]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[23707213]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[23707213]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. bark n.a. PMID[23823874]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. root n.a. PMID[24190290]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. leaf n.a. PMID[24190290]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[24793215]
NPO13745 Gynoxys verrucosa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[27057812]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. root n.a. PMID[27761113]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[27997206]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[28485933]
NPO6698 Euphorbia pithyusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[28671832]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota Roots n.a. n.a. PMID[30892884]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. PMID[38790803]
NPO25118 Centaurea benedicta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[39771277]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. root n.a. PMID[9987830]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2568 Posidonia oceanica Species Posidoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3482 Alpinia flabellata Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12018 Alternaria bataticola Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10905 Baccharis truncata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18026 Bipolaris sacchari Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7009 Callyspongia spinosissima Species Callyspongiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25118 Centaurea benedicta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27148 Chuquiraga erinacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11592 Cuphea hyssopifolia Species Lythraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5998 Echinoclathria subhispida Species Microcionidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13617 Eria rigida Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17166 Euphorbia palustris Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6698 Euphorbia pithyusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4282 Fouquieria diguetii Species Fouquieriaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13745 Gynoxys verrucosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2680 Holothuria squamifera Species Holothuriidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15992 Hypogymnia vittata Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14194 Mamestra brassicae Species Noctuidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11246 Ononis viscosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8721 Parectatosoma mocquerysi Species Anisacanthidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15514 Pedicularis rex Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO273 Phyllobates bicolor Species Dendrobatidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10532 Pinus edulis Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2043 Pseudocyphellaria coronata Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9538 Pterocarpus erinaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10048 Pyrus bourgaeana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14329 Sigillina signifera Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17358 Sorbus torminalis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15405 Suaeda maritima Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2070 Thioalkalivibrio versutus Species Ectothiorhodospiraceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO14455 Triunia erythrocarpa Species Proteaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13274 Illicium verum Species Schisandraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO13274 Illicium verum Species Schisandraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO13274 Illicium verum Species Schisandraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO10532 Pinus edulis Species Pinaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. Database[FooDB]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO10532 Pinus edulis Species Pinaceae Eukaryota n.a. n.a. Database[FooDB]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30805 Magnoliae officinalis n.a. n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17566 Magnolia biloba Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30822 Flos magnoliae Species Lycaenidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15826 Cortex magnoliae officinalis n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17566 Magnolia biloba Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13441 Flos magnoliae offcinalis Species Lycaenidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23867 Magnoliae officinalis praeparata n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO3482 Alpinia flabellata Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17566 Magnolia biloba Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17166 Euphorbia palustris Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4902 Aconitum carmichaelii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14194 Mamestra brassicae Species Noctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8721 Parectatosoma mocquerysi Species Anisacanthidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6698 Euphorbia pithyusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15514 Pedicularis rex Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25118 Centaurea benedicta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14329 Sigillina signifera Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15405 Suaeda maritima Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20881 Rheum officinale Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12018 Alternaria bataticola Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11592 Cuphea hyssopifolia Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4282 Fouquieria diguetii Species Fouquieriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2680 Holothuria squamifera Species Holothuriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10905 Baccharis truncata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13353 Sedum sarmentosum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10532 Pinus edulis Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13745 Gynoxys verrucosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5998 Echinoclathria subhispida Species Microcionidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13228 Farfugium japonicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2568 Posidonia oceanica Species Posidoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9133 Lathyrus latifolius Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13617 Eria rigida Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12483 Holarrhena floribunda Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2043 Pseudocyphellaria coronata Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9538 Pterocarpus erinaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7844 Fritillaria hupehensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15992 Hypogymnia vittata Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17358 Sorbus torminalis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10048 Pyrus bourgaeana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15299 Sandoricum koetjape Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27148 Chuquiraga erinacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13274 Illicium verum Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO273 Phyllobates bicolor Species Dendrobatidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11246 Ononis viscosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7632 Rheum tanguticum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14455 Triunia erythrocarpa Species Proteaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18026 Bipolaris sacchari Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17566 Magnolia biloba Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17336 Benincasa hispida Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17166 Euphorbia palustris Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3482 Alpinia flabellata Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7009 Callyspongia spinosissima Species Callyspongiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2070 Thioalkalivibrio versutus Species Ectothiorhodospiraceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13018 Thelephora aurantiotincta Species Thelephoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28024 Rheum palmatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25238 Rheum coreanum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7490 Aconitum japonicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT324 Individual protein Cyclooxygenase-1 Ovis aries Inhibition = 91.0 % PMID[19481465]
NPT325 Individual protein Cyclooxygenase-2 Ovis aries Inhibition = 88.3 % PMID[19481465]
NPT324 Individual protein Cyclooxygenase-1 Ovis aries IC50 = 1800.0 nM PMID[19481465]
NPT325 Individual protein Cyclooxygenase-2 Ovis aries IC50 = 2100.0 nM PMID[19481465]
NPT3 Individual protein Thioredoxin glutathione reductase Schistosoma mansoni Potency = 44668.4 nM PubChem BioAssay data set
NPT1861 Individual protein Mitochondrial import inner membrane translocase subunit TIM10 Saccharomyces cerevisiae S288c IC50 = 48800.0 nM PubChem BioAssay data set
NPT154 Individual protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 25118.9 nM PubChem BioAssay data set
NPT10 Individual protein Geminin Homo sapiens Potency n.a. 29092.9 nM PubChem BioAssay data set
NPT156 Individual protein Sphingomyelin phosphodiesterase Homo sapiens Potency n.a. 316227.8 nM PubChem BioAssay data set
NPT10 Individual protein Geminin Homo sapiens Potency n.a. 206.0 nM PubChem BioAssay data set
NPT101 Individual protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 14125.4 nM PubChem BioAssay data set
NPT159 Individual protein Aberrant vpr protein Human immunodeficiency virus 1 Potency n.a. 63095.7 nM PubChem BioAssay data set
NPT1287 Individual protein Cannabinoid CB2 receptor Homo sapiens Efficacy = 0.0 % PMID[24900561]
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens Efficacy = 168.0 % PMID[24900561]
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens EC50 > 10000.0 nM PMID[24900561]
NPT1287 Individual protein Cannabinoid CB2 receptor Homo sapiens Ki = 5610.0 nM PMID[24900561]
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens Ki = 6460.0 nM PMID[24900561]
NPT161 Individual protein Rap guanine nucleotide exchange factor 4 Homo sapiens Potency n.a. 50118.7 nM PubChem BioAssay data set
NPT1287 Individual protein Cannabinoid CB2 receptor Homo sapiens Ki = 5.61 nM PMID[27078864]
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens Ki = 6.46 nM PMID[27078864]
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 4466.8 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 22387.2 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 35481.3 nM PubChem BioAssay data set
NPT803 Individual protein Flap endonuclease 1 Homo sapiens Potency n.a. 70794.6 nM PubChem BioAssay data set
NPT25564 Single protein Platelet glycoprotein VI (GPVI) Homo sapiens Kd = 289000.0 nM PMID[32463237]
NPT497 Individual protein Maltase-glucoamylase Homo sapiens Inhibition = 17.1 % PMID[35617790]
NPT497 Individual protein Maltase-glucoamylase Homo sapiens Inhibition = 30.6 % PMID[36327695]
NPT28439 Single protein Angiotensin-converting enzyme 2 Homo sapiens Kd = 16980.0 nM PMID[35617790]
NPT497 Individual protein Maltase-glucoamylase Homo sapiens IC50 n.a. n.a. n.a. PMID[35617790]
NPT54 Individual protein Nonstructural protein 1 Influenza A virus Potency = 15848.9 nM PubChem BioAssay data set
NPT4770 Individual protein High-affinity choline transporter Homo sapiens IC50 n.a. 12022.64 nM PubChem BioAssay data set
NPT888 Individual protein 78 kDa glucose-regulated protein Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT67 Individual protein Cholinesterase Equus caballus Inhibition = 7.62 % PMID[23062825]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = -0.005676 % DOI[10.6019/CHEMBL4495564]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens EC50 = 170.0 nM PMID[34605238]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Inhibition = 73.4 % PMID[36191547]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Kd = 290.0 nM PMID[36191547]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Kd = 2990.0 nM PMID[36191547]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Activity = 107.7 % PMID[36191547]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Emax = 0.91 % PMID[34605238]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Inhibition = 67.9 % PMID[36191547]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = -7.14 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Kd = 1010.0 nM PMID[36191547]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Inhibition = 98.3 % PMID[36191547]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 5.3 % PMID[36651644]
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Kd = 970.0 nM PMID[36191547]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 4.9 % PMID[36651644]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = -11.83 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT4542 Individual protein NAD-dependent deacetylase sirtuin 3 Homo sapiens Kd = 40000.0 nM PMID[37439550]
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 17782.8 nM PubChem BioAssay data set
NPT59 Individual protein DNA polymerase beta Homo sapiens Potency = 35481.3 nM PubChem BioAssay data set
NPT60 Individual protein Lysosomal alpha-glucosidase Homo sapiens Potency = 35481.3 nM PubChem BioAssay data set
NPT2643 Protein complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens Smax = 1034.0 % PMID[21699169]
NPT2643 Protein complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens EC50 = 39300.0 nM PMID[21699169]
NPT2643 Protein complex GABA-A receptor; GABA-A site (alpha1/beta2 interface) Homo sapiens Activity = 376.0 % PMID[21699169]
NPT478 Individual protein Ataxin-2 Homo sapiens Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT66 Individual protein Acetylcholinesterase Electrophorus electricus Inhibition = -3.48 % PMID[23062825]
NPT920 Individual protein Alpha-synuclein Homo sapiens Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT535 Individual protein Parathyroid hormone receptor Homo sapiens Potency n.a. 44668.4 nM PubChem BioAssay data set
NPT29661 Single protein Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 Kd = 25010.0 nM PMID[35617790]
NPT570 Individual protein Arachidonate 5-lipoxygenase Homo sapiens Inhibition = 94.0 % PMID[19481465]
NPT570 Individual protein Arachidonate 5-lipoxygenase Homo sapiens IC50 = 4200.0 nM PMID[19481465]
NPT546 Individual protein Retinoid X receptor alpha Homo sapiens EC50 = 11800.0 nM PMID[20695472]
NPT442 Individual protein Ferritin light chain Equus caballus Potency = 35481.3 nM PubChem BioAssay data set
NPT442 Individual protein Ferritin light chain Equus caballus Potency = 15848.9 nM PubChem BioAssay data set
NPT442 Individual protein Ferritin light chain Equus caballus Potency = 14125.4 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 11220.2 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 14125.4 nM PubChem BioAssay data set
NPT532 Individual protein Lysine-specific demethylase 4A Homo sapiens Potency n.a. 63095.7 nM PubChem BioAssay data set
NPT4120 Individual protein G-protein coupled receptor 55 Homo sapiens Inhibition = 42.0 % PMID[24900561]
NPT493 Individual protein Neuraminidase Influenza A virus IC50 = 1390.0 nM PMID[24313801]
NPT493 Individual protein Neuraminidase Influenza A virus IC50 = 30100.0 nM PMID[24313801]
NPT49 Individual protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 15848.9 nM PubChem BioAssay data set
NPT546 Individual protein Retinoid X receptor alpha Homo sapiens ED50 = 11.8 uM PMID[24959987]
NPT1007 Protein complex GABA-A receptor; alpha-1/beta-2/gamma-2 Homo sapiens Emax = 78.0 % PMID[26410663]
NPT1007 Protein complex GABA-A receptor; alpha-1/beta-2/gamma-2 Homo sapiens EC50 = 76200.0 nM PMID[26410663]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT65 Cell line HepG2 Homo sapiens IC50 = 16500.0 nM PMID[21853991]
NPT4254 Cell line SVR Mus musculus Inhibition = 60.0 % PMID[17587572]
NPT4254 Cell line SVR Mus musculus Inhibition = 85.0 % PMID[17587572]
NPT404 Cell line CCRF-CEM Homo sapiens IC50 = 10900.0 nM PMID[17587572]
NPT189 Cell line Vero Chlorocebus aethiops IC50 = 22500.0 nM PMID[17587572]
NPT165 Cell line HeLa Homo sapiens IC50 > 5.0 ug.mL-1 PMID[17918910]
NPT81 Cell line A549 Homo sapiens IC50 > 5.0 ug.mL-1 PMID[17918910]
NPT111 Cell line K562 Homo sapiens IC50 > 5.0 ug.mL-1 PMID[17918910]
NPT80 Cell line Raji Homo sapiens Activity = 60.0 % PMID[1659613]
NPT80 Cell line Raji Homo sapiens Activity > 80.0 % PMID[1659613]
NPT323 Cell line SW-620 Homo sapiens Activity = 100.0 mm3 PMID[18762427]
NPT323 Cell line SW-620 Homo sapiens Activity = 150.0 mm3 PMID[18762427]
NPT323 Cell line SW-620 Homo sapiens Activity = 270.0 mm3 PMID[18762427]
NPT323 Cell line SW-620 Homo sapiens Activity = 600.0 mm3 PMID[18762427]
NPT323 Cell line SW-620 Homo sapiens Activity = 900.0 mm3 PMID[18762427]
NPT111 Cell line K562 Homo sapiens IC50 = 21100.0 nM PMID[19589678]
NPT179 Cell line A2780 Homo sapiens IC50 = 30500.0 nM PMID[19589678]
NPT81 Cell line A549 Homo sapiens IC50 = 35000.0 nM PMID[21853991]
NPT179 Cell line A2780 Homo sapiens IC50 = 41200.0 nM PMID[19589678]
NPT737 Cell line HUVEC Homo sapiens IC50 = 52600.0 nM PMID[21853991]
NPT737 Cell line HUVEC Homo sapiens Activity = 38.5 % PMID[21853991]
NPT737 Cell line HUVEC Homo sapiens Inhibition = 51.4 % PMID[21853991]
NPT65 Cell line HepG2 Homo sapiens Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT3908 Cell line N2a Mus musculus Activity = 41.03 % PMID[22209461]
NPT2644 Cell line UACC-903 Homo sapiens IC50 = 7450.0 nM PMID[22533983]
NPT2644 Cell line UACC-903 Homo sapiens IC50 = 5100.0 nM PMID[22533983]
NPT81 Cell line A549 Homo sapiens IC50 = 12510.0 nM PMID[22533983]
NPT81 Cell line A549 Homo sapiens IC50 = 7750.0 nM PMID[22533983]
NPT139 Cell line HT-29 Homo sapiens IC50 = 23050.0 nM PMID[22533983]
NPT139 Cell line HT-29 Homo sapiens IC50 = 13240.0 nM PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 50.5 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 61.1 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 72.9 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 37.9 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 28.1 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 21.7 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 11.6 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 10.8 % PMID[22533983]
NPT81 Cell line A549 Homo sapiens Activity = 5.4 % PMID[22533983]
NPT71 Cell line HEK293 Homo sapiens Inhibition = 59.3 % PMID[24018191]
NPT71 Cell line HEK293 Homo sapiens IC50 = 9.3 ug.mL-1 PMID[27259399]
NPT139 Cell line HT-29 Homo sapiens IC50 = 6.1 ug.mL-1 PMID[27259399]
NPT83 Cell line MCF7 Homo sapiens IC50 = 5.0 ug.mL-1 PMID[27259399]
NPT139 Cell line HT-29 Homo sapiens Activity = 55.0 % PMID[27259399]
NPT139 Cell line HT-29 Homo sapiens Activity = 36.0 % PMID[27259399]
NPT139 Cell line HT-29 Homo sapiens Activity = 45.0 % PMID[27259399]
NPT2341 Cell line NCI-H1975 Homo sapiens IC50 = 30200.0 nM PMID[30006164]
NPT397 Cell line NCI-H460 Homo sapiens IC50 = 38460.0 nM PMID[30006164]
NPT81 Cell line A549 Homo sapiens IC50 = 35310.0 nM PMID[30006164]
NPT1820 Cell line NCI-H1650 Homo sapiens IC50 = 37350.0 nM PMID[30006164]
NPT3377 Cell line PC-9 n.a. IC50 = 36720.0 nM PMID[30006164]
NPT2476 Cell line NCI-H441 Homo sapiens IC50 = 33320.0 nM PMID[30006164]
NPT2466 Cell line NCI-H358 Homo sapiens IC50 = 31570.0 nM PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 67.42 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 6.54 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 18.55 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 43.8 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 7.97 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 0.87 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 47.4 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 11.8 % PMID[30006164]
NPT2341 Cell line NCI-H1975 Homo sapiens Activity = 73.0 % PMID[30006164]
NPT34 Cell line BV-2 Mus musculus Activity = 118.4 % PMID[30472026]
NPT34 Cell line BV-2 Mus musculus IC50 = 17000.0 nM PMID[30472026]
NPT111 Cell line K562 Homo sapiens IC50 = 23910.0 nM PMID[31278004]
NPT81 Cell line A549 Homo sapiens IC50 = 35410.0 nM PMID[31278004]
NPT65 Cell line HepG2 Homo sapiens IC50 = 34300.0 nM PMID[31278004]
NPT65 Cell line HepG2 Homo sapiens IC50 = 33880.0 nM PMID[31278004]
NPT393 Cell line HCT-116 Homo sapiens IC50 = 19050.0 nM PMID[31278004]
NPT65 Cell line HepG2 Homo sapiens IC50 = 32900.0 nM PMID[31278004]
NPT81 Cell line A549 Homo sapiens IC50 = 34100.0 nM PMID[31278004]
NPT111 Cell line K562 Homo sapiens IC50 = 22100.0 nM PMID[31278004]
NPT81 Cell line A549 Homo sapiens IC50 = 29700.0 nM PMID[31278004]
NPT111 Cell line K562 Homo sapiens IC50 = 28400.0 nM PMID[31278004]
NPT165 Cell line HeLa Homo sapiens IC50 = 62000.0 nM PMID[31278004]
NPT139 Cell line HT-29 Homo sapiens IC50 = 25000.0 nM PMID[30733086]
NPT83 Cell line MCF7 Homo sapiens IC50 = 35000.0 nM PMID[30733086]
NPT71 Cell line HEK293 Homo sapiens IC50 = 40000.0 nM PMID[30733086]
NPT139 Cell line HT-29 Homo sapiens Activity = 53.0 % PMID[30733086]
NPT83 Cell line MCF7 Homo sapiens IC50 = 41800.0 nM PMID[31831382]
NPT81 Cell line A549 Homo sapiens IC50 = 38040.0 nM PMID[32996316]
NPT179 Cell line A2780 Homo sapiens IC50 = 31580.0 nM PMID[32996316]
NPT65 Cell line HepG2 Homo sapiens IC50 = 23850.0 nM PMID[32996316]
NPT139 Cell line HT-29 Homo sapiens IC50 = 31580.0 nM PMID[32996316]
NPT461 Cell line PANC-1 Homo sapiens IC50 = 31240.0 nM PMID[32996316]
NPT306 Cell line PC-3 Homo sapiens IC50 = 29030.0 nM PMID[32996316]
NPT393 Cell line HCT-116 Homo sapiens IC50 = 47650.0 nM PMID[36332549]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 44890.0 nM PMID[34605238]
NPT660 Cell line SW480 Homo sapiens IC50 = 15140.0 nM PMID[36332549]
NPT2170 Cell line RKO Homo sapiens IC50 = 11420.0 nM PMID[36332549]
NPT83 Cell line MCF7 Homo sapiens Activity > 70.0 % PMID[33360794]
NPT2615 Cell line HEK-293T Homo sapiens MNTD = 50.0 uM PMID[35617790]
NPT927 Cell line PBMC Homo sapiens CC50 = 16100.0 nM PMID[16722664]
NPT189 Cell line Vero Chlorocebus aethiops CC50 = 22500.0 nM PMID[16722664]
NPT404 Cell line CCRF-CEM Homo sapiens CC50 = 10900.0 nM PMID[16722664]
NPT927 Cell line PBMC Homo sapiens Ratio CC50/EC50 = 5.0 n.a. PMID[16722664]
NPT189 Cell line Vero Chlorocebus aethiops CC50 = 88900.0 nM PMID[17663539]
NPT27091 Protein complex Gamma-aminobutyric acid receptor subunit alpha-5/beta-2 Homo sapiens Smax = 347.0 % PMID[21699169]
NPT27091 Protein complex Gamma-aminobutyric acid receptor subunit alpha-5/beta-2 Homo sapiens EC50 = 23400.0 nM PMID[21699169]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 8275.3 nM PubChem BioAssay data set
NPT878 Organism Streptococcus mutans Streptococcus mutans MIC = 10.0 ug.mL-1 PMID[29402745]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -6.33 % DOI[10.21203/rs.3.rs-23951/v1]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -0.06 % DOI[10.6019/CHEMBL4495565]
NPT22964 Cell line CNE2Z Homo sapiens IC50 = 31270.0 nM PMID[31831382]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 50000.0 nM PMID[35617790]
NPT729 Organism Micrococcus luteus Micrococcus luteus MIC100 = 32.0 ug ml-1 PMID[34432450]
NPT1190 Organism Salmonella enterica Salmonella enterica MIC100 > 128.0 ug ml-1 PMID[34432450]
NPT878 Organism Streptococcus mutans Streptococcus mutans MIC = 66.6 ug.mL-1 PMID[34458737]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 36100.0 nM PMID[19589678]
NPT27092 Protein complex Gamma-aminobutyric acid receptor subunit alpha-3/ beta-2 Homo sapiens Smax = 2386.0 % PMID[21699169]
NPT27093 Protein complex Gamma-aminobutyric acid receptor subunit alpha-2/beta-2 Homo sapiens Smax = 1130.0 % PMID[21699169]
NPT25346 Protein complex GABA-A receptor alpha-1/beta-3 Homo sapiens Smax = 878.0 % PMID[21699169]
NPT27092 Protein complex Gamma-aminobutyric acid receptor subunit alpha-3/ beta-2 Homo sapiens EC50 = 52400.0 nM PMID[21699169]
NPT27093 Protein complex Gamma-aminobutyric acid receptor subunit alpha-2/beta-2 Homo sapiens EC50 = 46400.0 nM PMID[21699169]
NPT25346 Protein complex GABA-A receptor alpha-1/beta-3 Homo sapiens EC50 = 59600.0 nM PMID[21699169]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 65400.0 nM PMID[21853991]
NPT20 Organism Candida albicans Candida albicans MIC = 16.0 ug.mL-1 PMID[28051303]
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes MIC = 25.0 ug.mL-1 PMID[28051303]
NPT20 Organism Candida albicans Candida albicans MIC = 32.0 ug.mL-1 PMID[29402745]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC = 8.0 ug.mL-1 PMID[29402745]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 32.0 ug.mL-1 PMID[29402745]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC > 256.0 ug.mL-1 PMID[29402745]
NPT20 Organism Candida albicans Candida albicans Inhibition = 3.92 % DOI[10.6019/CHEMBL4513141]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae Inhibition = 7.54 % DOI[10.6019/CHEMBL4513141]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC100 = 32.0 ug ml-1 PMID[34432450]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 32.0 ug.mL-1 PMID[35820350]
NPT20 Organism Candida albicans Candida albicans MIC = 4.0 ug.mL-1 PMID[37787457]
NPT25144 Cell line HepG2-CD81 Homo sapiens HEPG2TOX ASSAY - CC50 > 12.4 uM PMID[30523084]
NPT25144 Cell line HepG2-CD81 Homo sapiens HEPG2TOX ASSAY - CC90 > 12.4 uM PMID[30523084]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 = 3300.0 nM PMID[17587572]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC90 = 22.7 uM PMID[17587572]
NPT1515 Organism SARS coronavirus SARS coronavirus EC50 = 6500.0 nM PMID[17663539]
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition < 25.0 % PMID[17663539]
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition = 25.0 % PMID[17663539]
NPT25344 Protein complex Gamma-aminobutyric acid receptor subunit alpha-1/ beta-1 Homo sapiens Smax = 260.0 % PMID[21699169]
NPT25344 Protein complex Gamma-aminobutyric acid receptor subunit alpha-1/ beta-1 Homo sapiens EC50 = 57000.0 nM PMID[21699169]
NPT191 Organism Hepatitis C virus Hepatitis C virus EC50 = 9400.0 nM PMID[24400834]
NPT22158 Cell line HCC827 Homo sapiens IC50 = 33880.0 nM PMID[30006164]
NPT19 Organism Escherichia coli Escherichia coli MIC90 > 256.0 ug.mL-1 PMID[29402745]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC90 = 16.0 ug.mL-1 PMID[29402745]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 50.0 ug.mL-1 PMID[29402745]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 16.0 ug.mL-1 PMID[29402745]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC = 16.0 ug.mL-1 PMID[29402745]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 32.0 ug.mL-1 PMID[29402745]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 256.0 ug.mL-1 PMID[29402745]
NPT19 Organism Escherichia coli Escherichia coli MIC > 256.0 ug.mL-1 PMID[29402745]
NPT474 Organism Plasmodium berghei Plasmodium berghei LUCIFERASE INFECTION ASSAY - IC50 > 12.4 uM PMID[30523084]
NPT474 Organism Plasmodium berghei Plasmodium berghei LUCIFERASE INFECTION ASSAY - IC90 > 12.4 uM PMID[30523084]
NPT474 Organism Plasmodium berghei Plasmodium berghei LUCIFERASE EXPRESSION CONTROL - IC50 = 11.4 uM PMID[30523084]
NPT474 Organism Plasmodium berghei Plasmodium berghei LUCIFERASE EXPRESSION CONTROL - IC90 = 11.4 uM PMID[30523084]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 4.96 % DOI[10.6019/CHEMBL4513141]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 34.04 % DOI[10.6019/CHEMBL4513141]
NPT21742 Cell line L02 Homo sapiens IC50 = 25490.0 nM PMID[32996316]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64.0 ug.mL-1 PMID[35820350]
NPT19 Organism Escherichia coli Escherichia coli MIC > 128.0 ug.mL-1 PMID[35820350]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 128.0 ug.mL-1 PMID[35820350]
NPT20950 Cell line Erythrocyte n.a. HC50 = 534.1 ug ml-1 PMID[34432450]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 128.0 ug.mL-1 PMID[35820350]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC100 = 64.0 ug ml-1 PMID[34432450]
NPT19 Organism Escherichia coli Escherichia coli MIC100 > 128.0 ug ml-1 PMID[34432450]
NPT1521 Organism Stenotrophomonas maltophilia Stenotrophomonas maltophilia MIC100 > 128.0 ug ml-1 PMID[34432450]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC100 = 64.0 ug ml-1 PMID[34432450]
NPT2 Others Unspecified n.a. Activity = 0.0 % PMID[1659613]
NPT2 Others Unspecified n.a. Activity = 18.5 % PMID[1659613]
NPT2 Others Unspecified n.a. Activity = 69.4 % PMID[1659613]
NPT2 Others Unspecified n.a. Activity = 90.1 % PMID[1659613]
NPT2 Others Unspecified n.a. Activity = 100.0 % PMID[1659613]
NPT2 Others Unspecified n.a. Potency = 18356.4 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Activity = 244.0 % PMID[21699169]
NPT2 Others Unspecified n.a. Activity = 116.0 % PMID[21699169]
NPT2 Others Unspecified n.a. Activity = 101.0 % PMID[21699169]
NPT2 Others Unspecified n.a. EC50 = 36200.0 nM PMID[21699169]
NPT2 Others Unspecified n.a. Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 11220.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. AC50 > 39000.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 25118.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1258.9 nM PubChem BioAssay data set
NPT22036 Cell line HL Homo sapiens Activity = 8.8 % PMID[29043803]
NPT194 Organism Dengue virus 2 Dengue virus 2 Activity > 90.0 % PMID[31128447]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii Inhibition = 25.67 % DOI[10.6019/CHEMBL4513141]
NPT27094 Cell line I10 Mus musculus IC50 = 31110.0 nM PMID[31831382]
NPT29139 Protein complex Glutamate NMDA receptor; GRIN1/GRIN2B Homo sapiens Activity n.a. n.a. n.a. PMID[38665828]
NPT2 Others Unspecified n.a. Ratio CC50/EC50 = 13.7 n.a. PMID[17663539]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus TIME = 0.001028 hr PMID[9461663]
NPT32 Organism Mus musculus Mus musculus TIME = 0.001111 hr PMID[9461663]
NPT32 Organism Mus musculus Mus musculus TIME = 0.002528 hr PMID[9461663]
NPT32 Organism Mus musculus Mus musculus TIME = 0.003028 hr PMID[9461663]
NPT32 Organism Mus musculus Mus musculus TIME = 0.003417 hr PMID[9461663]
NPT32 Organism Mus musculus Mus musculus Activity = 1.38 % PMID[30006164]
NPT32 Organism Mus musculus Mus musculus Activity = 6.1 % PMID[30006164]
NPT32 Organism Mus musculus Mus musculus Activity = 6.92 % PMID[30006164]
NPT617 Organism Danio rerio Danio rerio Inhibition < 25.0 % PMID[21853991]
NPT617 Organism Danio rerio Danio rerio Inhibition = 25.0 % PMID[21853991]
NPT617 Organism Danio rerio Danio rerio Inhibition = 50.0 % PMID[21853991]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 138.9 uM PMID[15109665]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 142.1 uM PMID[15109665]
NPT29 Organism Rattus norvegicus Rattus norvegicus Control = 95.6 % PMID[11934579]
NPT29 Organism Rattus norvegicus Rattus norvegicus Control = 106.0 % PMID[11934579]
NPT29 Organism Rattus norvegicus Rattus norvegicus Control = 113.0 % PMID[11934579]
NPT29 Organism Rattus norvegicus Rattus norvegicus Control = 143.0 % PMID[11934579]
NPT29 Organism Rattus norvegicus Rattus norvegicus Control = 29.7 % PMID[11934579]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 4000.0 mm PMID[26539813]
NPT29 Organism Rattus norvegicus Rattus norvegicus TIME = 0.5 hr PMID[26539813]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference
Candida albicans n.a. Drug uptake n.a. n.a. n.a. PMID[37787457]





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC168829 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7955 Intermediate Similarity NPC44732
0.7045 Intermediate Similarity NPC216216
0.6512 Remote Similarity NPC54765
0.6486 Remote Similarity NPC288411
0.6458 Remote Similarity NPC228988
0.5714 Remote Similarity NPC35344
0.56 Remote Similarity NPC141003
0.5455 Remote Similarity NPC95344
0.5333 Remote Similarity NPC295034
0.5333 Remote Similarity NPC308689

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC168829 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data