Structure

Physi-Chem Properties

Molecular Weight:  568.23
Volume:  572.044
LogP:  3.098
LogD:  2.022
LogS:  -4.51
# Rotatable Bonds:  8
TPSA:  153.5
# H-Bond Aceptor:  10
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  10

MedChem Properties

QED Drug-Likeness Score:  0.308
Synthetic Accessibility Score:  5.115
Fsp3:  0.516
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.089
MDCK Permeability:  3.2966374419629574e-05
Pgp-inhibitor:  1.0
Pgp-substrate:  0.008
Human Intestinal Absorption (HIA):  0.044
20% Bioavailability (F20%):  0.996
30% Bioavailability (F30%):  0.692

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.916
Plasma Protein Binding (PPB):  75.65878295898438%
Volume Distribution (VD):  0.555
Pgp-substrate:  24.785541534423828%

ADMET: Metabolism

CYP1A2-inhibitor:  0.029
CYP1A2-substrate:  0.104
CYP2C19-inhibitor:  0.13
CYP2C19-substrate:  0.09
CYP2C9-inhibitor:  0.283
CYP2C9-substrate:  0.084
CYP2D6-inhibitor:  0.013
CYP2D6-substrate:  0.062
CYP3A4-inhibitor:  0.781
CYP3A4-substrate:  0.495

ADMET: Excretion

Clearance (CL):  2.772
Half-life (T1/2):  0.153

ADMET: Toxicity

hERG Blockers:  0.032
Human Hepatotoxicity (H-HT):  0.401
Drug-inuced Liver Injury (DILI):  0.569
AMES Toxicity:  0.023
Rat Oral Acute Toxicity:  0.93
Maximum Recommended Daily Dose:  0.807
Skin Sensitization:  0.342
Carcinogencity:  0.182
Eye Corrosion:  0.007
Eye Irritation:  0.043
Respiratory Toxicity:  0.97

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC101043

Natural Product ID:  NPC101043
Common Name*:   Staminol D
IUPAC Name:   [(2S,3S,4R,4aS,4bR,8aR,10R,10aR)-6,10-diacetyloxy-3-ethenyl-2,10a-dihydroxy-2,4b,8,8-tetramethyl-1,7-dioxo-3,4,4a,8a,9,10-hexahydrophenanthren-4-yl] benzoate
Synonyms:   staminol D
Standard InCHIKey:  XBLOXIMBZRFVEK-KPKFSDCZSA-N
Standard InCHI:  InChI=1S/C31H36O10/c1-8-19-23(41-26(35)18-12-10-9-11-13-18)24-29(6)15-20(39-16(2)32)25(34)28(4,5)21(29)14-22(40-17(3)33)31(24,38)27(36)30(19,7)37/h8-13,15,19,21-24,37-38H,1,14H2,2-7H3/t19-,21-,22+,23+,24+,29-,30-,31-/m0/s1
SMILES:  C=C[C@H]1[C@@H](OC(=O)c2ccccc2)[C@H]2[C@@](C(=O)[C@@]1(C)O)(O)[C@H](OC(=O)C)C[C@@H]1[C@]2(C)C=C(OC(=O)C)C(=O)C1(C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL445435
PubChem CID:   11455867
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0000025] Phenanthrenes and derivatives
        • [CHEMONTID:0000223] Hydrophenanthrenes

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO2257 Oceanapia phillipensis Species Phloeodictyidae Eukaryota n.a. n.a. n.a. PMID[10654417]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11374950]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11473439]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12141863]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. Indonesia n.a. PMID[12467611]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota aerial parts Bangdung, Indonesia 2000-Aug PMID[12608860]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. Taiwan n.a. PMID[15104497]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[15516765]
NPO21944 Laurencia mariannensis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. PMID[18076141]
NPO10996 Ferula assa-foetida Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[19691312]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[20973550]
NPO5877 Morus yunnanensis Species Moraceae Eukaryota n.a. n.a. n.a. PMID[22165973]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[23700450]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. leaf n.a. PMID[23849114]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. PMID[24310066]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. PMID[25433632]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. n.a. PMID[26473275]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. PMID[26860358]
NPO23000 Zephyranthes carinata Species Amaryllidaceae Eukaryota Whole Plants n.a. n.a. PMID[28898076]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota Seeds n.a. n.a. PMID[31713425]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. PMID[31861466]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Petiole n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO23226 Satureja montana Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Protoplast n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[FooDB]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18655 Clerodendranthus spicatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. seed n.a. Database[MetaboLights]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO23226 Satureja montana Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18655 Clerodendranthus spicatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22071 Gentiana olivieri Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22462 Chlorophytum malayense Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21881 Stephania succifera Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21680 Saussurea triangulata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22137 Vernonia serratuloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21545 Maytenus guianensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20100 Ephedra lomatolepis Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10073 Clusia torresii Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22518 Gnetum cleistostachyum Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19152 Empetrum nigrum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22773 Teucrium alyssifolium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22071 Gentiana olivieri Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22952 Senecio grandiflorus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5890 Astragalus inopinatus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22717 Pinus thunbergii Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20726 Ophioplocus japonicus Species Ophiolepididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10996 Ferula assa-foetida Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20964 Picradeniopsis oppositifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23000 Zephyranthes carinata Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21944 Laurencia mariannensis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2257 Oceanapia phillipensis Species Phloeodictyidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5877 Morus yunnanensis Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21807 Lindera umbellata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7320 Nicotiana gossei Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16275 Pterocaulon rugosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11235 Asplenium nidus Species Aspleniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21384 Tetraria capillaris Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29219 Primula veris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23062 Melibe leonina Species Dendronotidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22015 Clausena indica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22462 Chlorophytum malayense Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21745 Phleum africanum Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22395 Ardisia macrocarpa Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21881 Stephania succifera Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19929 Jateorhiza palmata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14797 Orthosiphon aristatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22900 Orthosiphon stamineus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22197 Eriogaster lanestris Species Lasiocampidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5511 Populus tremula Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8541 Oryza sativa Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1408 Cirsium helenioides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21140 Igernella notabilis Species Dictyodendrillidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23183 Pinus halepensis Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14887 Handroanthus guayacan Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3549 Euonymus maackii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22911 Enterococcus faecalis Species Enterococcaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO23141 Angelica ursina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14529 Asterias rubens Species Asteriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2499 Celmisia petriei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1638 Ulmus laciniata Species Ulmaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23226 Satureja montana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10353 Rauvolfia tetraphylla Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23101 Ircinia aruensis Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8981 Senecio integerrimus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18655 Clerodendranthus spicatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14664 Stevia salicifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO592 Chroogomphus rutilus Species Gomphidiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT20763 CELL-LINE J774.1 Mus musculus IC50 = 92000.0 nM PMID[569005]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC101043 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC306799
0.9645 High Similarity NPC127857
0.958 High Similarity NPC60509
0.958 High Similarity NPC250046
0.958 High Similarity NPC81698
0.9514 High Similarity NPC165260
0.9514 High Similarity NPC161239
0.9514 High Similarity NPC198455
0.9514 High Similarity NPC112216
0.9514 High Similarity NPC7095
0.9448 High Similarity NPC51602
0.9448 High Similarity NPC471103
0.9388 High Similarity NPC282239
0.9324 High Similarity NPC106895
0.9324 High Similarity NPC217091
0.932 High Similarity NPC158333
0.932 High Similarity NPC256142
0.932 High Similarity NPC77719
0.932 High Similarity NPC472022
0.932 High Similarity NPC472030
0.932 High Similarity NPC249471
0.932 High Similarity NPC242262
0.932 High Similarity NPC473414
0.932 High Similarity NPC257213
0.932 High Similarity NPC265395
0.932 High Similarity NPC219419
0.932 High Similarity NPC1173
0.932 High Similarity NPC237549
0.932 High Similarity NPC472005
0.932 High Similarity NPC304876
0.9296 High Similarity NPC182869
0.9262 High Similarity NPC472393
0.9257 High Similarity NPC155329
0.9257 High Similarity NPC21410
0.9257 High Similarity NPC114410
0.9257 High Similarity NPC112523
0.9257 High Similarity NPC473670
0.9257 High Similarity NPC228204
0.9257 High Similarity NPC26033
0.9257 High Similarity NPC472549
0.9257 High Similarity NPC259144
0.9257 High Similarity NPC114357
0.9236 High Similarity NPC471100
0.9236 High Similarity NPC471107
0.92 High Similarity NPC471102
0.9189 High Similarity NPC11588
0.9189 High Similarity NPC229545
0.9189 High Similarity NPC248265
0.9189 High Similarity NPC134685
0.9133 High Similarity NPC469771
0.9122 High Similarity NPC472548
0.9116 High Similarity NPC254558
0.9116 High Similarity NPC91730
0.9097 High Similarity NPC102465
0.9054 High Similarity NPC197037
0.9028 High Similarity NPC472546
0.8993 High Similarity NPC477905
0.8986 High Similarity NPC470245
0.8986 High Similarity NPC473214
0.898 High Similarity NPC217918
0.8966 High Similarity NPC477894
0.8958 High Similarity NPC213567
0.8926 High Similarity NPC470153
0.8919 High Similarity NPC473215
0.8919 High Similarity NPC476975
0.8904 High Similarity NPC80895
0.8904 High Similarity NPC471912
0.8903 High Similarity NPC471493
0.8889 High Similarity NPC97667
0.8889 High Similarity NPC183270
0.8889 High Similarity NPC171207
0.8889 High Similarity NPC477904
0.8889 High Similarity NPC472547
0.8874 High Similarity NPC473632
0.8874 High Similarity NPC469730
0.8874 High Similarity NPC132599
0.8874 High Similarity NPC473611
0.8844 High Similarity NPC301946
0.8844 High Similarity NPC277053
0.8828 High Similarity NPC291599
0.8828 High Similarity NPC97947
0.8828 High Similarity NPC118080
0.8828 High Similarity NPC472576
0.8828 High Similarity NPC16912
0.8828 High Similarity NPC224491
0.8828 High Similarity NPC87448
0.8828 High Similarity NPC27377
0.8828 High Similarity NPC41481
0.8811 High Similarity NPC472551
0.8811 High Similarity NPC472545
0.8784 High Similarity NPC474935
0.8784 High Similarity NPC477737
0.8776 High Similarity NPC57628
0.8776 High Similarity NPC11685
0.8776 High Similarity NPC472569
0.8776 High Similarity NPC70716
0.8776 High Similarity NPC241951
0.8776 High Similarity NPC95265
0.8776 High Similarity NPC125106
0.8776 High Similarity NPC470231
0.8776 High Similarity NPC95810
0.8776 High Similarity NPC472573
0.8776 High Similarity NPC188865
0.8776 High Similarity NPC25768
0.8776 High Similarity NPC476974
0.8776 High Similarity NPC472570
0.8776 High Similarity NPC163719
0.8776 High Similarity NPC470152
0.8776 High Similarity NPC475759
0.8767 High Similarity NPC34012
0.8759 High Similarity NPC90614
0.8759 High Similarity NPC275592
0.8759 High Similarity NPC100913
0.8758 High Similarity NPC469417
0.875 High Similarity NPC39549
0.8741 High Similarity NPC477896
0.8741 High Similarity NPC477893
0.8718 High Similarity NPC329960
0.8718 High Similarity NPC295408
0.8718 High Similarity NPC150893
0.8716 High Similarity NPC473088
0.8716 High Similarity NPC177940
0.8716 High Similarity NPC472575
0.8716 High Similarity NPC469349
0.8716 High Similarity NPC471104
0.8716 High Similarity NPC158663
0.8716 High Similarity NPC29704
0.8716 High Similarity NPC171525
0.8716 High Similarity NPC470159
0.8716 High Similarity NPC70403
0.8716 High Similarity NPC184817
0.8716 High Similarity NPC174982
0.8716 High Similarity NPC472572
0.8716 High Similarity NPC472571
0.8716 High Similarity NPC96903
0.8716 High Similarity NPC200471
0.8716 High Similarity NPC476973
0.8716 High Similarity NPC472568
0.8716 High Similarity NPC470157
0.8716 High Similarity NPC472556
0.8707 High Similarity NPC163087
0.8701 High Similarity NPC469399
0.8693 High Similarity NPC11410
0.8658 High Similarity NPC475552
0.8654 High Similarity NPC55744
0.8649 High Similarity NPC475122
0.8649 High Similarity NPC38696
0.8627 High Similarity NPC251139
0.8611 High Similarity NPC291638
0.8611 High Similarity NPC17877
0.8611 High Similarity NPC472577
0.8611 High Similarity NPC195647
0.8611 High Similarity NPC66761
0.86 High Similarity NPC281717
0.8599 High Similarity NPC66193
0.859 High Similarity NPC476077
0.8581 High Similarity NPC91703
0.8571 High Similarity NPC70344
0.8562 High Similarity NPC133430
0.8562 High Similarity NPC469477
0.8553 High Similarity NPC161151
0.8544 High Similarity NPC471134
0.8543 High Similarity NPC301556
0.8543 High Similarity NPC473403
0.8543 High Similarity NPC92293
0.8543 High Similarity NPC270590
0.8543 High Similarity NPC471101
0.8543 High Similarity NPC266265
0.8542 High Similarity NPC474608
0.8533 High Similarity NPC473602
0.8533 High Similarity NPC469513
0.8516 High Similarity NPC477735
0.8506 High Similarity NPC5115
0.8503 High Similarity NPC4341
0.8503 High Similarity NPC473085
0.8503 High Similarity NPC184747
0.8503 High Similarity NPC476094
0.8503 High Similarity NPC43241
0.8503 High Similarity NPC473613
0.8503 High Similarity NPC473758
0.8503 High Similarity NPC211137
0.8503 High Similarity NPC473112
0.8503 High Similarity NPC473060
0.8503 High Similarity NPC48017
0.8503 High Similarity NPC200592
0.8503 High Similarity NPC147880
0.8503 High Similarity NPC473081
0.8503 High Similarity NPC473109
0.8497 Intermediate Similarity NPC469648
0.8497 Intermediate Similarity NPC138641
0.8497 Intermediate Similarity NPC469647
0.8497 Intermediate Similarity NPC283875
0.8497 Intermediate Similarity NPC22571
0.8493 Intermediate Similarity NPC183122
0.8493 Intermediate Similarity NPC283375
0.8493 Intermediate Similarity NPC184109
0.8491 Intermediate Similarity NPC61891
0.8481 Intermediate Similarity NPC188649
0.8477 Intermediate Similarity NPC132652
0.8462 Intermediate Similarity NPC477736

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC101043 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8467 Intermediate Similarity NPD7236 Approved
0.8312 Intermediate Similarity NPD7239 Suspended
0.8303 Intermediate Similarity NPD8368 Discontinued
0.8282 Intermediate Similarity NPD7799 Discontinued
0.8176 Intermediate Similarity NPD8435 Approved
0.8166 Intermediate Similarity NPD8434 Phase 2
0.8155 Intermediate Similarity NPD8407 Phase 2
0.807 Intermediate Similarity NPD8361 Approved
0.807 Intermediate Similarity NPD8360 Approved
0.7953 Intermediate Similarity NPD8424 Clinical (unspecified phase)
0.7898 Intermediate Similarity NPD8485 Approved
0.7849 Intermediate Similarity NPD8150 Discontinued
0.784 Intermediate Similarity NPD7057 Phase 3
0.784 Intermediate Similarity NPD7058 Phase 2
0.7826 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7798 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.7791 Intermediate Similarity NPD7075 Discontinued
0.7771 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD6599 Discontinued
0.7688 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7616 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.758 Intermediate Similarity NPD6190 Approved
0.7574 Intermediate Similarity NPD7473 Discontinued
0.7561 Intermediate Similarity NPD3817 Phase 2
0.7546 Intermediate Similarity NPD6801 Discontinued
0.7516 Intermediate Similarity NPD4628 Phase 3
0.75 Intermediate Similarity NPD7819 Suspended
0.7484 Intermediate Similarity NPD6799 Approved
0.7465 Intermediate Similarity NPD4198 Discontinued
0.7455 Intermediate Similarity NPD5402 Approved
0.7434 Intermediate Similarity NPD7961 Discontinued
0.7425 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7423 Intermediate Similarity NPD4380 Phase 2
0.7417 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.741 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD8166 Discontinued
0.7396 Intermediate Similarity NPD6232 Discontinued
0.7362 Intermediate Similarity NPD7458 Discontinued
0.736 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7351 Intermediate Similarity NPD7435 Discontinued
0.7346 Intermediate Similarity NPD5403 Approved
0.7329 Intermediate Similarity NPD3412 Clinical (unspecified phase)
0.7329 Intermediate Similarity NPD5401 Approved
0.7326 Intermediate Similarity NPD3751 Discontinued
0.7312 Intermediate Similarity NPD8319 Approved
0.7312 Intermediate Similarity NPD8320 Phase 1
0.731 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD6166 Phase 2
0.731 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD5844 Phase 1
0.7283 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD7411 Suspended
0.7273 Intermediate Similarity NPD2629 Approved
0.7273 Intermediate Similarity NPD8312 Approved
0.7273 Intermediate Similarity NPD8313 Approved
0.7257 Intermediate Similarity NPD6765 Approved
0.7257 Intermediate Similarity NPD6764 Approved
0.7256 Intermediate Similarity NPD3226 Approved
0.7246 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD8127 Discontinued
0.7216 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7202 Intermediate Similarity NPD3882 Suspended
0.72 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7198 Intermediate Similarity NPD6535 Approved
0.7198 Intermediate Similarity NPD6534 Approved
0.7193 Intermediate Similarity NPD3787 Discontinued
0.719 Intermediate Similarity NPD7008 Discontinued
0.7186 Intermediate Similarity NPD5761 Phase 2
0.7186 Intermediate Similarity NPD5760 Phase 2
0.7186 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD5494 Approved
0.7174 Intermediate Similarity NPD7700 Phase 2
0.7174 Intermediate Similarity NPD7699 Phase 2
0.716 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7159 Intermediate Similarity NPD7251 Discontinued
0.7153 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD8462 Phase 1
0.7126 Intermediate Similarity NPD1934 Approved
0.7125 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.712 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.712 Intermediate Similarity NPD7874 Approved
0.7119 Intermediate Similarity NPD7808 Phase 3
0.7117 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD2532 Approved
0.7117 Intermediate Similarity NPD2534 Approved
0.7117 Intermediate Similarity NPD2533 Approved
0.7117 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD2346 Discontinued
0.7105 Intermediate Similarity NPD6007 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD6797 Phase 2
0.7097 Intermediate Similarity NPD6776 Approved
0.7097 Intermediate Similarity NPD6777 Approved
0.7097 Intermediate Similarity NPD6780 Approved
0.7097 Intermediate Similarity NPD6779 Approved
0.7097 Intermediate Similarity NPD6782 Approved
0.7097 Intermediate Similarity NPD6781 Approved
0.7097 Intermediate Similarity NPD6778 Approved
0.7095 Intermediate Similarity NPD6784 Approved
0.7095 Intermediate Similarity NPD6785 Approved
0.7081 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7077 Intermediate Similarity NPD8404 Phase 2
0.7073 Intermediate Similarity NPD6273 Approved
0.7063 Intermediate Similarity NPD1609 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD7074 Phase 3
0.7035 Intermediate Similarity NPD6959 Discontinued
0.7032 Intermediate Similarity NPD3764 Approved
0.7029 Intermediate Similarity NPD3818 Discontinued
0.7024 Intermediate Similarity NPD37 Approved
0.7018 Intermediate Similarity NPD6234 Discontinued
0.7012 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD230 Phase 1
0.7006 Intermediate Similarity NPD6355 Discontinued
0.7 Intermediate Similarity NPD4967 Phase 2
0.7 Intermediate Similarity NPD7768 Phase 2
0.7 Intermediate Similarity NPD4966 Approved
0.7 Intermediate Similarity NPD4965 Approved
0.6989 Remote Similarity NPD7054 Approved
0.6984 Remote Similarity NPD7696 Phase 3
0.6984 Remote Similarity NPD7697 Approved
0.6984 Remote Similarity NPD7698 Approved
0.6984 Remote Similarity NPD7497 Discontinued
0.6982 Remote Similarity NPD2801 Approved
0.6981 Remote Similarity NPD2799 Discontinued
0.6975 Remote Similarity NPD7003 Approved
0.6975 Remote Similarity NPD3750 Approved
0.6968 Remote Similarity NPD7095 Approved
0.6966 Remote Similarity NPD7685 Pre-registration
0.6959 Remote Similarity NPD3749 Approved
0.6957 Remote Similarity NPD970 Clinical (unspecified phase)
0.6954 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6949 Remote Similarity NPD7472 Approved
0.6947 Remote Similarity NPD7870 Phase 2
0.6947 Remote Similarity NPD7871 Phase 2
0.6937 Remote Similarity NPD2796 Approved
0.6932 Remote Similarity NPD7228 Approved
0.6928 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6927 Remote Similarity NPD7701 Phase 2
0.6923 Remote Similarity NPD2313 Discontinued
0.6923 Remote Similarity NPD6798 Discontinued
0.6923 Remote Similarity NPD2067 Discontinued
0.6918 Remote Similarity NPD5951 Approved
0.6909 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6907 Remote Similarity NPD7801 Approved
0.6894 Remote Similarity NPD7702 Clinical (unspecified phase)
0.689 Remote Similarity NPD3300 Phase 2
0.6882 Remote Similarity NPD1465 Phase 2
0.6879 Remote Similarity NPD6233 Phase 2
0.6875 Remote Similarity NPD2181 Clinical (unspecified phase)
0.6875 Remote Similarity NPD3748 Approved
0.6875 Remote Similarity NPD1510 Phase 2
0.6872 Remote Similarity NPD6559 Discontinued
0.6867 Remote Similarity NPD7163 Clinical (unspecified phase)
0.6867 Remote Similarity NPD1512 Approved
0.6855 Remote Similarity NPD6651 Approved
0.6853 Remote Similarity NPD2182 Approved
0.6853 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6852 Remote Similarity NPD1549 Phase 2
0.6846 Remote Similarity NPD7741 Discontinued
0.6845 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6845 Remote Similarity NPD8090 Clinical (unspecified phase)
0.6832 Remote Similarity NPD5405 Approved
0.6832 Remote Similarity NPD2935 Discontinued
0.6832 Remote Similarity NPD5404 Approved
0.6832 Remote Similarity NPD6100 Approved
0.6832 Remote Similarity NPD5406 Approved
0.6832 Remote Similarity NPD5408 Approved
0.6832 Remote Similarity NPD6099 Approved
0.6821 Remote Similarity NPD7457 Clinical (unspecified phase)
0.6821 Remote Similarity NPD919 Approved
0.6813 Remote Similarity NPD7097 Phase 1
0.681 Remote Similarity NPD2800 Approved
0.6807 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6804 Remote Similarity NPD8151 Discontinued
0.679 Remote Similarity NPD1550 Clinical (unspecified phase)
0.679 Remote Similarity NPD5763 Approved
0.679 Remote Similarity NPD1471 Phase 3
0.679 Remote Similarity NPD1552 Clinical (unspecified phase)
0.679 Remote Similarity NPD5762 Approved
0.6784 Remote Similarity NPD8455 Phase 2
0.6781 Remote Similarity NPD7094 Approved
0.6781 Remote Similarity NPD6858 Approved
0.6778 Remote Similarity NPD7240 Approved
0.677 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6766 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6759 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6754 Remote Similarity NPD6823 Phase 2
0.675 Remote Similarity NPD1607 Approved
0.6747 Remote Similarity NPD7390 Discontinued
0.6747 Remote Similarity NPD1511 Approved
0.6747 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6743 Remote Similarity NPD7199 Phase 2
0.6736 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6735 Remote Similarity NPD6010 Discontinued
0.6733 Remote Similarity NPD9545 Approved
0.673 Remote Similarity NPD1240 Approved
0.6727 Remote Similarity NPD2354 Approved
0.6727 Remote Similarity NPD3887 Approved
0.671 Remote Similarity NPD1470 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data