Natural Product: NPC127857| Natural Product ID | NPC127857 |
|
Common Name
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
| Secoorthosiphol B |
| IUPAC Name | 2-[(1S,2R,4R,4aR,6R,8R,8aS)-4-acetyloxy-8-benzoyloxy-6-ethenyl-4a-hydroxy-2-(1-methoxy-2-methyl-1-oxopropan-2-yl)-1,6-dimethyl-5-oxo-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]acetic acid |
| Synonyms | |
| Synthetic Gene Cluster | n.a. |
| ChEMBL Identifier | CHEMBL510190 |
| PubChem CID |
15548728 |
| Chemical Classification |
|
The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.
Chemical Representations
| Standard InCHIKey | ZNOSNEAHXFOXRY-KKKLMDDUSA-N |
| Standard InCHI | InChI=1S/C30H38O10/c1-8-28(5)15-19(40-24(34)18-12-10-9-11-13-18)23-29(6,16-22(32)33)20(27(3,4)26(36)38-7)14-21(39-17(2)31)30(23,37)25(28)35/h8-13,19-21,23,37H,1,14-16H2,2-7H3,(H,32,33)/t19-,20+,21-,23-,28+,29+,30+/m1/s1 |
| SMILES | COC(=O)C([C@@H]1C[C@@H](OC(=O)C)[C@@]2([C@@H]([C@@]1(C)CC(=O)O)[C@H](OC(=O)c1ccccc1)C[C@](C2=O)(C)C=C)O)(C)C |
  Calculated Properties| Molecular Weight:   | 558.25 | Volume:   | 565.941 Van der Waals volume.
|
| Dense:   | 0.986 | LogP:   | 2.844 The logarithm of the n-octanol/water distribution coefficients.
|
| logD7.4:   | 2.379 The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
|
LogS:   | -4.681 The logarithm of aqueous solubility value.
|
| Rotatable Bonds:   | 11.0 | Rigid Bonds:   | 23.0 |
| TPSA:   | 153.5 Topological Polar Surface Area.
|
H-Bond Acceptor:   | 10.0 |
| H-Bond Donor:   | 2.0 | Rings:   | 3.0 |
| Heavy Atoms:   | 10.0 |
| QED Drug-Likeness Score:   | 0.276 | GASA:   | 1.0 GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
|
| Synthetic Accessibility Score:   | 4.909 | Fsp3:   | 0.567 |
| MCE-18:   | 104.872 MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
|
Lipinski Rule-of-5:   | Rejected |
| Pfizer Rule:   | Rejected | GSK Rule:   | Accepted |
| Golden Triangle Rule:   | Accepted | BMS Rule:   | 0 |
| Chelating Alert:   | 0 | PAINS Alert:   | 0 |
| Colloidal aggregators:   | 0.112 | Fluc inhibitor:   | 0.021 The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
|
| Blue fluorescence:   | 0.003 The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
|
Green fluorescence:   | 0.026 The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
|
| Reactive compounds:   | 0.194 | Promiscuous compounds:   | 0.308 |
| Caco-2 Permeability:   | -5.553 | MDCK Permeability:   | -5.042 |
| Pgp-inhibitor:   | 0.002 | Pgp-substrate:   | 0.821 |
| PAMPA:   |
1.0 The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
|
Human Intestinal Absorption (HIA):   | 0.0 |
| 20% Bioavailability (F20%):   | 0.933 | 30% Bioavailability (F30%):   | 0.59 |
| 50% Bioavailability (F50%):   | 0.999 |
| Blood-Brain-Barrier Penetration (BBB):   | 0.056 | MRP1:   | 1.0 |
| Plasma Protein Binding (PPB):   | 86.376% | Volume Distribution (VD):   | -0.098 |
| Fu: |
11.695% The fraction unbound in plasms.
|
OATP1B1 inhibitor:   | 1.0 |
| OATP1B3 inhibitor:   | 0.968 | BCRP inhibitor:   | 0.019 |
| BSEP inhibitor:   | 0.968 |
| CYP1A2-inhibitor:   | 0.0 | CYP1A2-substrate:   | 0.0 |
| CYP2C19-inhibitor:   | 0.0 | CYP2C19-substrate:   | 0.023 |
| CYP2C9-inhibitor:   | 0.001 | CYP2C9-substrate:   | 0.0 |
| CYP2D6-inhibitor:   | 0.0 | CYP2D6-substrate:   | 0.002 |
| CYP3A4-inhibitor:   | 0.849 | CYP3A4-substrate:   | 0.071 |
| CYP2B6-substrate:   | 0.0 | CYP2C8-inhibitor:   | 1.0 |
| HLM stability:   |
0.372 Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.
|
| Clearance (CL):   | 1.014 | Half-life (T1/2):   | 1.274 |
| hERG Blockers:   | 0.005 | hERG Blockers (10um):   | 0.05 |
| Human Hepatotoxicity (H-HT):   | 0.157 | Drug-induced Liver Injury (DILI):   | 0.594 |
| AMES Toxicity:   | 0.13 | Rat Oral Acute Toxicity:   | 0.092 |
| Maximum Recommended Daily Dose:   | 0.145 | Skin Sensitization:   | 0.869 |
| Carcinogencity:   | 0.762 | Eye Corrosion:   | 0.102 |
| Eye Irritation:   | 0.796 | Respiratory Toxicity:   | 0.483 |
| Drug-induced Neurotoxicity:   | 0.07 | Ototoxicity:   | 0.347 |
| Hematotoxicity:   | 0.271 | Drug-induced Nephrotoxicity:   | 0.952 |
| Genotoxicity:   | 0.928 | RPMI-8226 Immunitoxicity:   | 0.027 |
| A549 Cytotoxicity:   | 0.011 | Hek293 Cytotoxicity:   | 0.069 |
| BCF:   |
0.376 Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
|
IGC50:   |
3.06 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
|
| LC50DM:   |
4.54 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
|
LC50FM:   |
3.661 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].
|
  Species Source| Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
|---|---|---|---|---|---|---|---|---|
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1007/s11356-018-3422-z] |
| NPO2257 | Oceanapia phillipensis | Species | Phloeodictyidae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10654417] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11374950] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11473439] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[12141863] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | Indonesia | n.a. |
PMID[12467611] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | aerial parts | Bangdung, Indonesia | 2000-Aug |
PMID[12608860] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | Taiwan | n.a. |
PMID[15104497] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[15516765] |
| NPO21944 | Laurencia mariannensis | Species | Rhodomelaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18076141] |
| NPO10996 | Ferula assa-foetida | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19691312] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20973550] |
| NPO5877 | Morus yunnanensis | Species | Moraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22165973] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23700450] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[23849114] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24310066] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | seed | n.a. |
PMID[25433632] |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26473275] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | seed | n.a. |
PMID[26860358] |
| NPO23000 | Zephyranthes carinata | Species | Amaryllidaceae | Eukaryota | Whole Plants | n.a. | n.a. |
PMID[28898076] |
| NPO10996 | Ferula assa-foetida | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[31707845] |
| NPO3549 | Euonymus maackii | Species | Celastraceae | Eukaryota | Seeds | n.a. | n.a. |
PMID[31713425] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. |
PMID[31861466] |
|
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[32933154] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[33081385] |
| NPO23183 | Pinus halepensis | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[34847783] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[36671383] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[36840093] |
| NPO23183 | Pinus halepensis | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38202742] |
| NPO10996 | Ferula assa-foetida | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[385653815] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38792127] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10996 | Ferula assa-foetida | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18655 | Clerodendranthus spicatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14529 | Asterias rubens | Species | Asteriidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23183 | Pinus halepensis | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22911 | Enterococcus faecalis | Species | Enterococcaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11235 | Asplenium nidus | Species | Aspleniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO29219 | Primula veris | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22773 | Teucrium alyssifolium | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22071 | Gentiana olivieri | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14797 | Orthosiphon aristatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23141 | Angelica ursina | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22395 | Ardisia macrocarpa | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5890 | Astragalus inopinatus | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO2499 | Celmisia petriei | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22462 | Chlorophytum malayense | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO592 | Chroogomphus rutilus | Species | Gomphidiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1408 | Cirsium helenioides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22015 | Clausena indica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10073 | Clusia torresii | Species | Clusiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20100 | Ephedra lomatolepis | Species | Ephedraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22197 | Eriogaster lanestris | Species | Lasiocampidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3549 | Euonymus maackii | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22518 | Gnetum cleistostachyum | Species | Gnetaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14887 | Handroanthus guayacan | Species | Bignoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21140 | Igernella notabilis | Species | Dictyodendrillidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23101 | Ircinia aruensis | Species | Irciniidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19929 | Jateorhiza palmata | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21944 | Laurencia mariannensis | Species | Rhodomelaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21545 | Maytenus guianensis | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23062 | Melibe leonina | Species | Dendronotidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5877 | Morus yunnanensis | Species | Moraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7320 | Nicotiana gossei | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO2257 | Oceanapia phillipensis | Species | Phloeodictyidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20726 | Ophioplocus japonicus | Species | Ophiolepididae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21745 | Phleum africanum | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20964 | Picradeniopsis oppositifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22717 | Pinus thunbergii | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5511 | Populus tremula | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16275 | Pterocaulon rugosum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10353 | Rauvolfia tetraphylla | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21680 | Saussurea triangulata | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22952 | Senecio grandiflorus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8981 | Senecio integerrimus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21881 | Stephania succifera | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14664 | Stevia salicifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21384 | Tetraria capillaris | Species | Cyperaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1638 | Ulmus laciniata | Species | Ulmaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22137 | Vernonia serratuloides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23000 | Zephyranthes carinata | Species | Amaryllidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Leaf | n.a. | n.a. | Database[FooDB] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Petiole | n.a. | n.a. | Database[FooDB] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Protoplast | n.a. | n.a. | Database[FooDB] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Seed | n.a. | n.a. | Database[FooDB] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | Shoot | n.a. | n.a. | Database[FooDB] |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO18655 | Clerodendranthus spicatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO29219 | Primula veris | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO19929 | Jateorhiza palmata | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO5511 | Populus tremula | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO23141 | Angelica ursina | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8981 | Senecio integerrimus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | seed | n.a. | Database[MetaboLights] |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | Fruits | n.a. | Database[Phenol-Explorer] | |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO19929 | Jateorhiza palmata | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO18655 | Clerodendranthus spicatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO22462 | Chlorophytum malayense | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO23141 | Angelica ursina | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO22071 | Gentiana olivieri | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO8981 | Senecio integerrimus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO5511 | Populus tremula | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO3549 | Euonymus maackii | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO29219 | Primula veris | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO21881 | Stephania succifera | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO19929 | Jateorhiza palmata | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO21545 | Maytenus guianensis | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19152 | Empetrum nigrum | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5890 | Astragalus inopinatus | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20726 | Ophioplocus japonicus | Species | Ophiolepididae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21807 | Lindera umbellata | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21384 | Tetraria capillaris | Species | Cyperaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22462 | Chlorophytum malayense | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21881 | Stephania succifera | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22900 | Orthosiphon stamineus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1408 | Cirsium helenioides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21140 | Igernella notabilis | Species | Dictyodendrillidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23226 | Satureja montana | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21680 | Saussurea triangulata | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22518 | Gnetum cleistostachyum | Species | Gnetaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22952 | Senecio grandiflorus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22717 | Pinus thunbergii | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23000 | Zephyranthes carinata | Species | Amaryllidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5877 | Morus yunnanensis | Species | Moraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16275 | Pterocaulon rugosum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19451 | Salvia prionitis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5511 | Populus tremula | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14887 | Handroanthus guayacan | Species | Bignoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23141 | Angelica ursina | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1638 | Ulmus laciniata | Species | Ulmaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23101 | Ircinia aruensis | Species | Irciniidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14664 | Stevia salicifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20100 | Ephedra lomatolepis | Species | Ephedraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22773 | Teucrium alyssifolium | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10996 | Ferula assa-foetida | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20964 | Picradeniopsis oppositifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21944 | Laurencia mariannensis | Species | Rhodomelaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7320 | Nicotiana gossei | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29219 | Primula veris | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21745 | Phleum africanum | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19929 | Jateorhiza palmata | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22197 | Eriogaster lanestris | Species | Lasiocampidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23183 | Pinus halepensis | Species | Pinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22911 | Enterococcus faecalis | Species | Enterococcaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO2499 | Celmisia petriei | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10353 | Rauvolfia tetraphylla | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8981 | Senecio integerrimus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22137 | Vernonia serratuloides | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11235 | Asplenium nidus | Species | Aspleniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22015 | Clausena indica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22395 | Ardisia macrocarpa | Species | Primulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14797 | Orthosiphon aristatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8541 | Oryza sativa | Species | Poaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3549 | Euonymus maackii | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14529 | Asterias rubens | Species | Asteriidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO592 | Chroogomphus rutilus | Species | Gomphidiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10073 | Clusia torresii | Species | Clusiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22071 | Gentiana olivieri | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO2257 | Oceanapia phillipensis | Species | Phloeodictyidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23062 | Melibe leonina | Species | Dendronotidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18655 | Clerodendranthus spicatus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration| Organism ID | Organism Name | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
|---|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Biological Activity
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|---|---|---|---|---|---|---|---|
| NPT20763 | Cell line | J774.1 | Mus musculus | IC50 | = | 127000.0 | nM | PMID[12608860] |
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
Experimental ADME
| Experiment Model | Experiment Tissue | ADME Type | ADME Relation | ADME Value | ADME Unit | Reference |
|---|
Experimental Toxicity
| Experiment Model | Experiment Organism | Toxicity Type | Toxicity Relation | Toxicity Value | Toxicity Unit | Reference |
|---|
Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria
| Hepatotoxicity | Carcinogenicity | Mutagenicity | Cardiotoxicity | Respiratory Toxicity | Eye Irritation | Endocrine Disruption |
|---|---|---|---|---|---|---|
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Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]
  Chemically structural similarityTop-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)
Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.
●  The left chart: Distribution of similarity level between NPC127857 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Natural Product ID |
|---|---|---|
| 0.6154 | Remote Similarity | NPC48568 |
| 0.6125 | Remote Similarity | NPC306799 |
| 0.6076 | Remote Similarity | NPC478503 |
| 0.6076 | Remote Similarity | NPC237549 |
| 0.6 | Remote Similarity | NPC257213 |
| 0.6 | Remote Similarity | NPC478502 |
| 0.6 | Remote Similarity | NPC249471 |
| 0.6 | Remote Similarity | NPC472030 |
| 0.5854 | Remote Similarity | NPC473414 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC127857 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Drug ID | Developmental Stage |
|---|---|---|---|
| NPD |
  Bioactivity similaritySimilarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.
