Structure

Physi-Chem Properties

Molecular Weight:  1098.49
Volume:  1049.302
LogP:  2.749
LogD:  0.496
LogS:  -2.977
# Rotatable Bonds:  16
TPSA:  347.2
# H-Bond Aceptor:  24
# H-Bond Donor:  10
# Rings:  8
# Heavy Atoms:  24

MedChem Properties

QED Drug-Likeness Score:  0.109
Synthetic Accessibility Score:  7.111
Fsp3:  0.774
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.352
MDCK Permeability:  0.0004663885629270226
Pgp-inhibitor:  0.0
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  0.182
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  0.001

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.153
Plasma Protein Binding (PPB):  70.94991302490234%
Volume Distribution (VD):  0.05
Pgp-substrate:  13.344161033630371%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.87
CYP2C19-inhibitor:  0.008
CYP2C19-substrate:  0.57
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.02
CYP2D6-inhibitor:  0.001
CYP2D6-substrate:  0.078
CYP3A4-inhibitor:  0.024
CYP3A4-substrate:  0.283

ADMET: Excretion

Clearance (CL):  0.382
Half-life (T1/2):  0.104

ADMET: Toxicity

hERG Blockers:  0.26
Human Hepatotoxicity (H-HT):  0.396
Drug-inuced Liver Injury (DILI):  0.989
AMES Toxicity:  0.673
Rat Oral Acute Toxicity:  0.152
Maximum Recommended Daily Dose:  0.933
Skin Sensitization:  0.073
Carcinogencity:  0.08
Eye Corrosion:  0.003
Eye Irritation:  0.005
Respiratory Toxicity:  0.056

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC470199

Natural Product ID:  NPC470199
Common Name*:   Chromomycin 02-3G
IUPAC Name:   (2S,3S)-2-[(2S,4S,5R,6R)-4-[(2S,4S,5R,6R)-4-[(2S,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyloxan-2-yl]oxy-5-hydroxy-6-methyloxan-2-yl]oxy-5-hydroxy-6-methyloxan-2-yl]oxy-3-[(1S,3S,4R)-3,4-dihydroxy-1-methoxy-2-oxopentyl]-8,9-dihydroxy-6-[(2S,4R,5R,6R)-5-hydroxy-4-[(2R,4R,5S,6R)-4-hydroxy-5-methoxy-6-methyloxan-2-yl]oxy-6-methyloxan-2-yl]oxy-7-methyl-3,4-dihydro-2H-anthracen-1-one
Synonyms:   Chromomycin 02-3G
Standard InCHIKey:  UZZCFUQRSLEKFX-CJSIHQFISA-N
Standard InCHI:  InChI=1S/C53H78O24/c1-19-30(73-35-15-31(43(58)21(3)68-35)74-34-14-29(55)49(66-9)24(6)71-34)13-27-11-26-12-28(50(67-10)48(63)42(57)20(2)54)51(47(62)40(26)46(61)39(27)41(19)56)77-37-17-32(44(59)23(5)70-37)75-36-16-33(45(60)22(4)69-36)76-38-18-53(8,65)52(64)25(7)72-38/h11,13,20-25,28-29,31-38,42-45,49-52,54-61,64-65H,12,14-18H2,1-10H3/t20-,21-,22-,23-,24-,25+,28+,29-,31-,32+,33+,34-,35+,36+,37+,38+,42+,43-,44-,45-,49-,50+,51+,52+,53-/m1/s1
SMILES:  CC1C(C(CC(O1)OC2C(CC3=C(C2=O)C(=C4C(=C3)C=C(C(=C4O)C)OC5CC(C(C(O5)C)O)OC6CC(C(C(O6)C)OC)O)O)C(C(=O)C(C(C)O)O)OC)OC7CC(C(C(O7)C)O)OC8CC(C(C(O8)C)O)(C)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1817815
PubChem CID:   56657907
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0004603] Organic oxygen compounds
      • [CHEMONTID:0000323] Organooxygen compounds
        • [CHEMONTID:0000011] Carbohydrates and carbohydrate conjugates
          • [CHEMONTID:0000198] Oligosaccharides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344559]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344578]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10348041]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10604756]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10695669]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10724004]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10994816]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11099231]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11132958]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11374972]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11473415]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14738393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Australian n.a. PMID[15497950]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15813185]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844966]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15974616]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16180833]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[1666120]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724845]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16830891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16872146]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17125235]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17315965]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17551212]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17608531]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17844998]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17887721]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17917237]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18044841]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Indonesian n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18205372]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Northwest Territories, Canada 1995 PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18666798]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18776684]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19007176]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19129624]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19191549]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19856955]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19883065]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20092333]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20545334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20836523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028889]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21090727]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21314175]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21639131]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21728289]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21751787]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21807523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21873059]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21879726]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[22145663]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22574670]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22583058]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22591466]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22758660]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22775474]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23387796]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23662937]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24592993]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24754815]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24878306]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24964393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25211234]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25455147]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25495422]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25537064]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25918793]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25934225]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26035239]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26465675]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26798949]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26905826]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31013087]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31298537]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31894983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32298122]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8501018]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[8784423]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931733]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8982334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031666]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031676]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066767]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066768]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9186568]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9531983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[9711246]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens IC50 > 50000.0 nM PMID[527347]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 50000.0 nM PMID[527347]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC470199 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC314459
0.9886 High Similarity NPC316274
0.9886 High Similarity NPC470198
0.9886 High Similarity NPC470195
0.9886 High Similarity NPC470197
0.9886 High Similarity NPC470193
0.9886 High Similarity NPC470196
0.9886 High Similarity NPC470194
0.9886 High Similarity NPC470200
0.9886 High Similarity NPC282474
0.9278 High Similarity NPC48474
0.9162 High Similarity NPC87583
0.9157 High Similarity NPC313452
0.9148 High Similarity NPC46958
0.9143 High Similarity NPC213052
0.9101 High Similarity NPC315221
0.9091 High Similarity NPC474345
0.9081 High Similarity NPC131405
0.9056 High Similarity NPC473686
0.9056 High Similarity NPC221140
0.9056 High Similarity NPC475220
0.9056 High Similarity NPC229817
0.9056 High Similarity NPC475352
0.9045 High Similarity NPC72783
0.904 High Similarity NPC475246
0.9022 High Similarity NPC314687
0.9011 High Similarity NPC314672
0.8994 High Similarity NPC470452
0.8994 High Similarity NPC197357
0.8994 High Similarity NPC470448
0.8994 High Similarity NPC164047
0.8994 High Similarity NPC477860
0.8994 High Similarity NPC470453
0.8994 High Similarity NPC475161
0.8994 High Similarity NPC85316
0.8983 High Similarity NPC63105
0.8983 High Similarity NPC3718
0.8977 High Similarity NPC111536
0.8977 High Similarity NPC76128
0.8977 High Similarity NPC30432
0.8977 High Similarity NPC271385
0.8977 High Similarity NPC5029
0.8971 High Similarity NPC259905
0.8966 High Similarity NPC178851
0.895 High Similarity NPC241847
0.8944 High Similarity NPC473631
0.8944 High Similarity NPC293227
0.8944 High Similarity NPC475662
0.8944 High Similarity NPC473717
0.8939 High Similarity NPC277710
0.8939 High Similarity NPC299149
0.8939 High Similarity NPC153578
0.8939 High Similarity NPC245059
0.8939 High Similarity NPC84494
0.8939 High Similarity NPC114257
0.8933 High Similarity NPC475233
0.892 High Similarity NPC298778
0.8901 High Similarity NPC282636
0.8901 High Similarity NPC294863
0.8895 High Similarity NPC292706
0.8895 High Similarity NPC224557
0.8876 High Similarity NPC68381
0.8864 High Similarity NPC5319
0.8864 High Similarity NPC473202
0.8827 High Similarity NPC176246
0.8827 High Similarity NPC289876
0.882 High Similarity NPC98776
0.882 High Similarity NPC470335
0.882 High Similarity NPC472054
0.882 High Similarity NPC168789
0.882 High Similarity NPC470336
0.8791 High Similarity NPC318119
0.8791 High Similarity NPC75574
0.8791 High Similarity NPC106700
0.8778 High Similarity NPC477682
0.8778 High Similarity NPC477683
0.8771 High Similarity NPC307754
0.8771 High Similarity NPC223735
0.8771 High Similarity NPC470454
0.8771 High Similarity NPC199533
0.8771 High Similarity NPC70862
0.8757 High Similarity NPC264302
0.8757 High Similarity NPC222455
0.875 High Similarity NPC221342
0.875 High Similarity NPC12013
0.875 High Similarity NPC11432
0.875 High Similarity NPC477613
0.875 High Similarity NPC186816
0.875 High Similarity NPC32641
0.875 High Similarity NPC476470
0.875 High Similarity NPC203145
0.875 High Similarity NPC142142
0.875 High Similarity NPC189564
0.875 High Similarity NPC256188
0.8736 High Similarity NPC321916
0.8729 High Similarity NPC283980
0.8729 High Similarity NPC192539
0.8729 High Similarity NPC187441
0.8729 High Similarity NPC212290
0.8729 High Similarity NPC58538
0.8722 High Similarity NPC232818
0.8722 High Similarity NPC255799
0.8722 High Similarity NPC122467
0.8722 High Similarity NPC14187
0.8722 High Similarity NPC202908
0.8722 High Similarity NPC48984
0.8722 High Similarity NPC292019
0.8722 High Similarity NPC198893
0.8722 High Similarity NPC314489
0.8715 High Similarity NPC154986
0.8715 High Similarity NPC85368
0.8715 High Similarity NPC203751
0.8715 High Similarity NPC25724
0.8715 High Similarity NPC65118
0.8708 High Similarity NPC138990
0.8708 High Similarity NPC209550
0.8708 High Similarity NPC478021
0.8708 High Similarity NPC277532
0.8708 High Similarity NPC175429
0.8701 High Similarity NPC249977
0.8696 High Similarity NPC64755
0.8693 High Similarity NPC292929
0.8693 High Similarity NPC289667
0.8693 High Similarity NPC76831
0.8693 High Similarity NPC135358
0.8693 High Similarity NPC287889
0.8689 High Similarity NPC148710
0.8686 High Similarity NPC259834
0.8686 High Similarity NPC190450
0.8686 High Similarity NPC216752
0.8681 High Similarity NPC208069
0.8674 High Similarity NPC251417
0.8674 High Similarity NPC470334
0.8674 High Similarity NPC89052
0.8674 High Similarity NPC5671
0.8667 High Similarity NPC294629
0.8667 High Similarity NPC146803
0.8667 High Similarity NPC470667
0.8667 High Similarity NPC108202
0.8659 High Similarity NPC288152
0.8659 High Similarity NPC137871
0.8659 High Similarity NPC294501
0.8659 High Similarity NPC9002
0.8659 High Similarity NPC183441
0.8659 High Similarity NPC257011
0.8652 High Similarity NPC470206
0.8652 High Similarity NPC175477
0.8652 High Similarity NPC470207
0.8649 High Similarity NPC473618
0.8644 High Similarity NPC178173
0.8644 High Similarity NPC70441
0.8641 High Similarity NPC33083
0.8636 High Similarity NPC124155
0.8636 High Similarity NPC183672
0.8636 High Similarity NPC311850
0.8636 High Similarity NPC179198
0.8636 High Similarity NPC257566
0.8636 High Similarity NPC473644
0.8636 High Similarity NPC66087
0.8636 High Similarity NPC278419
0.8634 High Similarity NPC132111
0.8619 High Similarity NPC102053
0.8619 High Similarity NPC219043
0.8619 High Similarity NPC324220
0.8619 High Similarity NPC312630
0.8619 High Similarity NPC469345
0.8603 High Similarity NPC210808
0.8603 High Similarity NPC199079
0.8603 High Similarity NPC241874
0.8602 High Similarity NPC201814
0.8595 High Similarity NPC105591
0.8595 High Similarity NPC179947
0.8588 High Similarity NPC7752
0.8588 High Similarity NPC99216
0.8587 High Similarity NPC275977
0.8587 High Similarity NPC223860
0.8587 High Similarity NPC49690
0.8587 High Similarity NPC249560
0.858 High Similarity NPC475382
0.858 High Similarity NPC131745
0.858 High Similarity NPC240306
0.858 High Similarity NPC44947
0.858 High Similarity NPC244875
0.8571 High Similarity NPC3474
0.8571 High Similarity NPC115447
0.8571 High Similarity NPC142860
0.8571 High Similarity NPC246469
0.8571 High Similarity NPC83331
0.8571 High Similarity NPC470581
0.8571 High Similarity NPC153342
0.8571 High Similarity NPC470582
0.8571 High Similarity NPC271270
0.8571 High Similarity NPC97285
0.8564 High Similarity NPC186800
0.8564 High Similarity NPC294815
0.8564 High Similarity NPC98667
0.8564 High Similarity NPC86809
0.8564 High Similarity NPC16194
0.8564 High Similarity NPC473327
0.8564 High Similarity NPC102028

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC470199 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8864 High Similarity NPD7804 Clinical (unspecified phase)
0.8696 High Similarity NPD7879 Clinical (unspecified phase)
0.8667 High Similarity NPD7808 Phase 3
0.8611 High Similarity NPD7251 Discontinued
0.8556 High Similarity NPD6797 Phase 2
0.8516 High Similarity NPD8313 Approved
0.8516 High Similarity NPD8312 Approved
0.85 High Similarity NPD7074 Phase 3
0.8418 Intermediate Similarity NPD6959 Discontinued
0.8398 Intermediate Similarity NPD7472 Approved
0.8343 Intermediate Similarity NPD7054 Approved
0.8249 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8232 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.8232 Intermediate Similarity NPD7783 Phase 2
0.8223 Intermediate Similarity NPD8151 Discontinued
0.8207 Intermediate Similarity NPD6559 Discontinued
0.8177 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.8177 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8177 Intermediate Similarity NPD6166 Phase 2
0.8162 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8154 Intermediate Similarity NPD7698 Approved
0.8154 Intermediate Similarity NPD7697 Approved
0.8154 Intermediate Similarity NPD7696 Phase 3
0.8154 Intermediate Similarity NPD7435 Discontinued
0.8146 Intermediate Similarity NPD7075 Discontinued
0.8112 Intermediate Similarity NPD8320 Phase 1
0.8112 Intermediate Similarity NPD8319 Approved
0.8093 Intermediate Similarity NPD6776 Approved
0.8093 Intermediate Similarity NPD6777 Approved
0.8093 Intermediate Similarity NPD6779 Approved
0.8093 Intermediate Similarity NPD6782 Approved
0.8093 Intermediate Similarity NPD6780 Approved
0.8093 Intermediate Similarity NPD6781 Approved
0.8093 Intermediate Similarity NPD6778 Approved
0.8081 Intermediate Similarity NPD7701 Phase 2
0.8033 Intermediate Similarity NPD7473 Discontinued
0.802 Intermediate Similarity NPD7871 Phase 2
0.802 Intermediate Similarity NPD7870 Phase 2
0.8 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD7874 Approved
0.799 Intermediate Similarity NPD7700 Phase 2
0.799 Intermediate Similarity NPD7699 Phase 2
0.7989 Intermediate Similarity NPD3751 Discontinued
0.7989 Intermediate Similarity NPD3818 Discontinued
0.7978 Intermediate Similarity NPD7819 Suspended
0.7978 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7967 Intermediate Similarity NPD3787 Discontinued
0.796 Intermediate Similarity NPD7801 Approved
0.7957 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.791 Intermediate Similarity NPD4380 Phase 2
0.7892 Intermediate Similarity NPD7228 Approved
0.788 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7877 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7869 Intermediate Similarity NPD6232 Discontinued
0.7849 Intermediate Similarity NPD5844 Phase 1
0.7835 Intermediate Similarity NPD6535 Approved
0.7835 Intermediate Similarity NPD6534 Approved
0.7821 Intermediate Similarity NPD6801 Discontinued
0.7812 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7801 Intermediate Similarity NPD8150 Discontinued
0.7778 Intermediate Similarity NPD8455 Phase 2
0.7765 Intermediate Similarity NPD7411 Suspended
0.7739 Intermediate Similarity NPD6823 Phase 2
0.7727 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7722 Intermediate Similarity NPD1934 Approved
0.7692 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7663 Intermediate Similarity NPD5494 Approved
0.7656 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7637 Intermediate Similarity NPD5402 Approved
0.7637 Intermediate Similarity NPD3817 Phase 2
0.7632 Intermediate Similarity NPD7240 Approved
0.7619 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7611 Intermediate Similarity NPD6599 Discontinued
0.7596 Intermediate Similarity NPD3882 Suspended
0.7556 Intermediate Similarity NPD3226 Approved
0.7528 Intermediate Similarity NPD2533 Approved
0.7528 Intermediate Similarity NPD2534 Approved
0.7528 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7528 Intermediate Similarity NPD2532 Approved
0.7527 Intermediate Similarity NPD37 Approved
0.7526 Intermediate Similarity NPD8434 Phase 2
0.7514 Intermediate Similarity NPD6234 Discontinued
0.75 Intermediate Similarity NPD4966 Approved
0.75 Intermediate Similarity NPD4965 Approved
0.75 Intermediate Similarity NPD4967 Phase 2
0.75 Intermediate Similarity NPD7768 Phase 2
0.7486 Intermediate Similarity NPD1465 Phase 2
0.7486 Intermediate Similarity NPD2801 Approved
0.7472 Intermediate Similarity NPD6799 Approved
0.7472 Intermediate Similarity NPD7390 Discontinued
0.7459 Intermediate Similarity NPD3749 Approved
0.7447 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD5403 Approved
0.7429 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7429 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD1512 Approved
0.7386 Intermediate Similarity NPD1549 Phase 2
0.7363 Intermediate Similarity NPD7458 Discontinued
0.734 Intermediate Similarity NPD7199 Phase 2
0.7337 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD6213 Phase 3
0.7337 Intermediate Similarity NPD6212 Phase 3
0.7333 Intermediate Similarity NPD5401 Approved
0.733 Intermediate Similarity NPD7584 Approved
0.7313 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7282 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD1511 Approved
0.7273 Intermediate Similarity NPD6100 Approved
0.7273 Intermediate Similarity NPD6099 Approved
0.7268 Intermediate Similarity NPD7685 Pre-registration
0.7268 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7249 Intermediate Similarity NPD1247 Approved
0.7247 Intermediate Similarity NPD6674 Discontinued
0.7216 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7202 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7202 Intermediate Similarity NPD8059 Phase 3
0.7175 Intermediate Similarity NPD2796 Approved
0.717 Intermediate Similarity NPD7930 Approved
0.7157 Intermediate Similarity NPD8285 Discontinued
0.7157 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD2346 Discontinued
0.7122 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.712 Intermediate Similarity NPD5710 Approved
0.712 Intermediate Similarity NPD5711 Approved
0.7119 Intermediate Similarity NPD1510 Phase 2
0.7111 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD3750 Approved
0.7111 Intermediate Similarity NPD4628 Phase 3
0.7102 Intermediate Similarity NPD1607 Approved
0.7101 Intermediate Similarity NPD7680 Approved
0.7056 Intermediate Similarity NPD2800 Approved
0.7053 Intermediate Similarity NPD919 Approved
0.7049 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD7229 Phase 3
0.7027 Intermediate Similarity NPD8067 Phase 3
0.6995 Remote Similarity NPD3926 Phase 2
0.6989 Remote Similarity NPD1240 Approved
0.6986 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6974 Remote Similarity NPD7799 Discontinued
0.6973 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6972 Remote Similarity NPD8366 Approved
0.6967 Remote Similarity NPD7585 Approved
0.6923 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6919 Remote Similarity NPD7583 Approved
0.6914 Remote Similarity NPD4625 Phase 3
0.691 Remote Similarity NPD6651 Approved
0.6893 Remote Similarity NPD4060 Phase 1
0.6892 Remote Similarity NPD8469 Approved
0.6889 Remote Similarity NPD1551 Phase 2
0.6889 Remote Similarity NPD2935 Discontinued
0.6885 Remote Similarity NPD6190 Approved
0.6884 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6882 Remote Similarity NPD920 Approved
0.6878 Remote Similarity NPD4363 Phase 3
0.6878 Remote Similarity NPD4360 Phase 2
0.6875 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6875 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6872 Remote Similarity NPD7999 Approved
0.6872 Remote Similarity NPD2403 Approved
0.6869 Remote Similarity NPD5953 Discontinued
0.6853 Remote Similarity NPD7286 Phase 2
0.6847 Remote Similarity NPD8491 Approved
0.6845 Remote Similarity NPD1653 Approved
0.6833 Remote Similarity NPD3748 Approved
0.6833 Remote Similarity NPD2799 Discontinued
0.6831 Remote Similarity NPD7003 Approved
0.6802 Remote Similarity NPD7893 Clinical (unspecified phase)
0.6796 Remote Similarity NPD5404 Approved
0.6796 Remote Similarity NPD5406 Approved
0.6796 Remote Similarity NPD5408 Approved
0.6796 Remote Similarity NPD5405 Approved
0.678 Remote Similarity NPD6410 Clinical (unspecified phase)
0.678 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6778 Remote Similarity NPD7097 Phase 1
0.6776 Remote Similarity NPD1243 Approved
0.6774 Remote Similarity NPD642 Clinical (unspecified phase)
0.6761 Remote Similarity NPD4908 Phase 1
0.676 Remote Similarity NPD6355 Discontinued
0.6758 Remote Similarity NPD7266 Discontinued
0.6758 Remote Similarity NPD1471 Phase 3
0.6754 Remote Similarity NPD5760 Phase 2
0.6754 Remote Similarity NPD5761 Phase 2
0.675 Remote Similarity NPD8368 Discontinued
0.6742 Remote Similarity NPD7907 Approved
0.6738 Remote Similarity NPD6273 Approved
0.6737 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6733 Remote Similarity NPD7090 Clinical (unspecified phase)
0.672 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6718 Remote Similarity NPD8127 Discontinued
0.6717 Remote Similarity NPD7177 Discontinued
0.6712 Remote Similarity NPD8404 Phase 2
0.6704 Remote Similarity NPD1613 Approved
0.6704 Remote Similarity NPD1612 Clinical (unspecified phase)
0.6701 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6695 Remote Similarity NPD8461 Discontinued
0.6685 Remote Similarity NPD5698 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data