Natural Product: NPC271385| Natural Product ID | NPC271385 |
|
Common Name
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
| Fucosyltransferase V |
| IUPAC Name | 1,6-dihydroxy-3-methyl-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyanthracene-9,10-dione |
| Synonyms | Fucosyltransferase V |
| Synthetic Gene Cluster | n.a. |
| ChEMBL Identifier | CHEMBL464360 |
| PubChem CID |
99649 |
| Chemical Classification |
|
The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.
Chemical Representations
| Standard InCHIKey | HSWIRQIYASIOBE-JNHRPPPUSA-N |
| Standard InCHI | InChI=1S/C21H20O10/c1-7-2-9-14(11(24)3-7)18(27)15-10(16(9)25)4-8(23)5-12(15)30-21-20(29)19(28)17(26)13(6-22)31-21/h2-5,13,17,19-24,26,28-29H,6H2,1H3/t13-,17-,19+,20-,21-/m1/s1 |
| SMILES | Cc1cc2c(c(c1)O)C(=O)c1c(cc(cc1O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](CO)O1)O)O)O)O)C2=O |
  Calculated Properties| Molecular Weight:   | 432.11 | Volume:   | 404.357 Van der Waals volume.
|
| Dense:   | 1.069 | LogP:   | 1.647 The logarithm of the n-octanol/water distribution coefficients.
|
| logD7.4:   | 1.969 The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
|
LogS:   | -3.656 The logarithm of aqueous solubility value.
|
| Rotatable Bonds:   | 3.0 | Rigid Bonds:   | 24.0 |
| TPSA:   | 173.98 Topological Polar Surface Area.
|
H-Bond Acceptor:   | 10.0 |
| H-Bond Donor:   | 6.0 | Rings:   | 4.0 |
| Heavy Atoms:   | 10.0 |
| QED Drug-Likeness Score:   | 0.312 | GASA:   | 0.0 GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
|
| Synthetic Accessibility Score:   | 3.936 | Fsp3:   | 0.333 |
| MCE-18:   | 90.643 MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
|
Lipinski Rule-of-5:   | Rejected |
| Pfizer Rule:   | Rejected | GSK Rule:   | Accepted |
| Golden Triangle Rule:   | Rejected | BMS Rule:   | 0 |
| Chelating Alert:   | 0 | PAINS Alert:   | 1 |
| Colloidal aggregators:   | 0.522 | Fluc inhibitor:   | 0.175 The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
|
| Blue fluorescence:   | 0.379 The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
|
Green fluorescence:   | 0.697 The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
|
| Reactive compounds:   | 0.187 | Promiscuous compounds:   | 0.426 |
| Caco-2 Permeability:   | -6.189 | MDCK Permeability:   | -5.121 |
| Pgp-inhibitor:   | 0.0 | Pgp-substrate:   | 0.082 |
| PAMPA:   |
0.997 The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
|
Human Intestinal Absorption (HIA):   | 0.267 |
| 20% Bioavailability (F20%):   | 0.096 | 30% Bioavailability (F30%):   | 0.982 |
| 50% Bioavailability (F50%):   | 0.988 |
| Blood-Brain-Barrier Penetration (BBB):   | 0.001 | MRP1:   | 0.347 |
| Plasma Protein Binding (PPB):   | 90.451% | Volume Distribution (VD):   | 0.211 |
| Fu: |
10.044% The fraction unbound in plasms.
|
OATP1B1 inhibitor:   | 0.999 |
| OATP1B3 inhibitor:   | 1.0 | BCRP inhibitor:   | 0.013 |
| BSEP inhibitor:   | 0.0 |
| CYP1A2-inhibitor:   | 0.889 | CYP1A2-substrate:   | 0.0 |
| CYP2C19-inhibitor:   | 0.0 | CYP2C19-substrate:   | 0.019 |
| CYP2C9-inhibitor:   | 0.0 | CYP2C9-substrate:   | 0.0 |
| CYP2D6-inhibitor:   | 0.0 | CYP2D6-substrate:   | 0.004 |
| CYP3A4-inhibitor:   | 0.0 | CYP3A4-substrate:   | 0.0 |
| CYP2B6-substrate:   | 0.0 | CYP2C8-inhibitor:   | 0.998 |
| HLM stability:   |
0.129 Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.
|
| Clearance (CL):   | 3.056 | Half-life (T1/2):   | 3.328 |
| hERG Blockers:   | 0.02 | hERG Blockers (10um):   | 0.176 |
| Human Hepatotoxicity (H-HT):   | 0.818 | Drug-induced Liver Injury (DILI):   | 0.967 |
| AMES Toxicity:   | 0.973 | Rat Oral Acute Toxicity:   | 0.048 |
| Maximum Recommended Daily Dose:   | 0.054 | Skin Sensitization:   | 0.998 |
| Carcinogencity:   | 0.562 | Eye Corrosion:   | 0.0 |
| Eye Irritation:   | 0.564 | Respiratory Toxicity:   | 0.064 |
| Drug-induced Neurotoxicity:   | 0.02 | Ototoxicity:   | 0.92 |
| Hematotoxicity:   | 0.69 | Drug-induced Nephrotoxicity:   | 0.751 |
| Genotoxicity:   | 0.922 | RPMI-8226 Immunitoxicity:   | 0.261 |
| A549 Cytotoxicity:   | 0.858 | Hek293 Cytotoxicity:   | 0.533 |
| BCF:   |
0.811 Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
|
IGC50:   |
3.433 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
|
| LC50DM:   |
4.801 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
|
LC50FM:   |
4.024 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].
|
  Species Source| Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
|---|---|---|---|---|---|---|---|---|
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1007/s11164-015-2099-x] |
| NPO12079 | Dysoxylum cumingianum | Species | Meliaceae | Eukaryota | n.a. | leaf | n.a. | DOI[10.1021/jo00051a050] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1134/S1021443711030101] |
| NPO21244 | Delphinium nuttallianum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10978210] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11076555] |
| NPO14520 | Bassia muricata | Species | Chenopodiaceae | Eukaryota | n.a. | aerial part | n.a. |
PMID[11454355] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[11459643] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[1517743] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | root | n.a. |
PMID[16441081] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[16675659] |
| NPO8819 | Nepeta parnassica | Species | Lamiaceae | Eukaryota | aerial parts | Mt. Parnassos, Greece | n.a. |
PMID[18393463] |
| NPO21244 | Delphinium nuttallianum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19012276] |
| NPO397 | Thymelaea hirsuta | Species | Thymelaeaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19284745] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19719093] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | root | n.a. |
PMID[22074222] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22074222] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22512738] |
| NPO32783 | endophytic aspergillus | Species | n.a. | n.a. | n.a. | n.a. | n.a. |
PMID[23683594] |
| NPO32491 | rumex plants | n.a. | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23683594] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | rhizome | n.a. |
PMID[23867078] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | root | n.a. |
PMID[23867078] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24479468] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | roots | n.a. | n.a. |
PMID[24957203] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25445757] |
| NPO19996 | Caulerpa peltata | Species | Caulerpaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25593390] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25744461] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26841168] |
| NPO13237 | Teucrium yemense | Species | n.a. | n.a. | Aerial Parts | n.a. | n.a. |
PMID[28581290] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[32196343] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[8277318] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10359 | Chaiturus marrubiastrum | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19818 | Jacquemontia paniculata | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14248 | Mandragora autumnalis | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20223 | Rosa pomifera | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7786 | Lentinus tigrinus | Species | Lentinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10026 | Mitracarpus scaber | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14304 | Physalis alkekengi | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7819.1 | Epichloe festucae var. lolii | Varieties | Clavicipitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26899 | Cheilanthes argentea | Species | Pteridaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO15297 | Aconitum seravschanicum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13716 | Aconitum tasiromontanum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14217 | Adansonia grandidieri | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14412 | Aphyllocladus denticulatus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO2631 | Aster sedifolius | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14520 | Bassia muricata | Species | Chenopodiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4345 | Caulocystis cephalornithos | Species | Sargassaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16590 | Cytophaga hutchinsoni | Species | Cytophagaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14104 | Dendriopoterium menendezii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9448 | Dictyopteris australis | Species | Dictyotaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12079 | Dysoxylum cumingianum | Species | Meliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8386 | Enceliopsis argophylla | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11749 | Eria mollis | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14014 | Eriocheir sinensis | Species | Varunidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10688 | Flacourtia jangomas | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13403 | Gadus morhua callarias | Species | Gadidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO624 | Isaria fumosorosea | Species | Cordycipitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22526 | Justicia secunda | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3214 | Lavandula vera | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9752 | Miliusa velutina | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13523 | Neobalanocarpus heimii | Species | Dipterocarpaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11580 | Onobrychis arenaria | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12252 | Psychotria stachyoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO986 | Rattus rattus | Species | Muridae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO2198 | Rivularia firma | Species | Rivulariaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1501 | Senecio subdentatus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13421 | Sphaerella laricina | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13237 | Teucrium yemense | Species | n.a. | n.a. | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO397 | Thymelaea hirsuta | Species | Thymelaeaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4158 | Hymenoxys lemmonii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22675 | Helichrysum chionosphaerum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20490 | Erythrophleum ivorense | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18144 | Metrodorea nigra | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO19037 | Senecio praecox | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20422 | Albizia myriophylla | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21244 | Delphinium nuttallianum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26393.1 | Petunia integrifolia subsp. inflata | Subspecies | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO17018 | Salvia greggii | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8819 | Nepeta parnassica | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20753 | Grangea maderaspatana | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO21691 | Dillenia indica | Species | Dilleniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13454 | Amphorogyne spicata | Species | Amphorogynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26917 | Quercus rubra | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16142 | Verbascum thapsiforme | Species | Scrophulariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO15422 | Carduus tenuiflorus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20144 | Lespedeza tomentosa | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO6079 | Adalia bipunctata | Species | Coccinellidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18287 | Penicillium bilaiae | Species | Aspergillaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO32783 | endophytic aspergillus | Species | n.a. | n.a. | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO32491 | rumex plants | n.a. | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | Fruit | n.a. | n.a. | Database[FooDB] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO14014 | Eriocheir sinensis | Species | Varunidae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO20144 | Lespedeza tomentosa | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO20490 | Erythrophleum ivorense | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO14304 | Physalis alkekengi | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO26917 | Quercus rubra | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO20144 | Lespedeza tomentosa | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO14304 | Physalis alkekengi | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO26917 | Quercus rubra | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO17018 | Salvia greggii | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO15297 | Aconitum seravschanicum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO20490 | Erythrophleum ivorense | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13754 | Tanacetum coccineum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO21691 | Dillenia indica | Species | Dilleniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO26899 | Cheilanthes argentea | Species | Pteridaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO2228 | Photinia serratifolia | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO14014 | Eriocheir sinensis | Species | Varunidae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO20490 | Erythrophleum ivorense | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO14014 | Eriocheir sinensis | Species | Varunidae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO14304 | Physalis alkekengi | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO16590 | Cytophaga hutchinsoni | Species | Cytophagaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO2631 | Aster sedifolius | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10026 | Mitracarpus scaber | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12252 | Psychotria stachyoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20947 | Tagetes filifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12108 | Aizopsis selskiana | Species | Crassulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12477 | Dodonaea viscosa | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14014 | Eriocheir sinensis | Species | Varunidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13754 | Tanacetum coccineum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19512 | Gleichenia quadripartita | Species | Gleicheniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16572 | Rhododendron dahuricum | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO624 | Isaria fumosorosea | Species | Cordycipitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21691 | Dillenia indica | Species | Dilleniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7786 | Lentinus tigrinus | Species | Lentinaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14412 | Aphyllocladus denticulatus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26899 | Cheilanthes argentea | Species | Pteridaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20144 | Lespedeza tomentosa | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8386 | Enceliopsis argophylla | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21244 | Delphinium nuttallianum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13454 | Amphorogyne spicata | Species | Amphorogynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9448 | Dictyopteris australis | Species | Dictyotaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13237 | Teucrium yemense | Species | n.a. | n.a. | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7154 | Glycyrrhiza uralensis | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20881 | Rheum officinale | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20560 | Polyporus betulinus | Species | Polyporaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14520 | Bassia muricata | Species | Chenopodiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19818 | Jacquemontia paniculata | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17018 | Salvia greggii | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20625 | Delphinium virgatum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21376 | Lupinus corymbosus | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14304 | Physalis alkekengi | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18867 | Stephanitis takeyai | Species | Tingidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4345 | Caulocystis cephalornithos | Species | Sargassaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO2198 | Rivularia firma | Species | Rivulariaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14800 | Oophaga granulifera | Species | Dendrobatidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13523 | Neobalanocarpus heimii | Species | Dipterocarpaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19037 | Senecio praecox | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11580 | Onobrychis arenaria | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3214 | Lavandula vera | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17856 | Anaphalis lactea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14217 | Adansonia grandidieri | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18144 | Metrodorea nigra | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19996 | Caulerpa peltata | Species | Caulerpaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14932.1 | Dalbergia lanceolaria subsp. paniculata | Subspecies | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21564 | Senecio behnii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO2228 | Photinia serratifolia | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14248 | Mandragora autumnalis | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13246 | Pinalia stricta | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26393.1 | Petunia integrifolia subsp. inflata | Subspecies | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7819.1 | Epichloe festucae var. lolii | Varieties | Clavicipitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20844 | Sphaerella rosigena | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12079 | Dysoxylum cumingianum | Species | Meliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10688 | Flacourtia jangomas | Species | Salicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17568 | Balanophora laxiflora | Species | Balanophoraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19232 | Anchusa azurea | Species | Boraginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO15297 | Aconitum seravschanicum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13716 | Aconitum tasiromontanum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19671 | Dipsacus azureus | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1501 | Senecio subdentatus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22675 | Helichrysum chionosphaerum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO15422 | Carduus tenuiflorus | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22526 | Justicia secunda | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19395 | Nepeta granatensis | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20223 | Rosa pomifera | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20753 | Grangea maderaspatana | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16142 | Verbascum thapsiforme | Species | Scrophulariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO24407 | Bipolaris heveae | Species | Pleosporaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14104 | Dendriopoterium menendezii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18287 | Penicillium bilaiae | Species | Aspergillaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO17336 | Benincasa hispida | Species | Cucurbitaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO21112 | Chaetomium carinthiacum | Species | Chaetomiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10216 | Leptocereus quadricostatus | Species | Cactaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13403 | Gadus morhua callarias | Species | Gadidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20353 | Degenia velebitica | Species | Brassicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13421 | Sphaerella laricina | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9752 | Miliusa velutina | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10359 | Chaiturus marrubiastrum | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20422 | Albizia myriophylla | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO397 | Thymelaea hirsuta | Species | Thymelaeaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27737 | Penicillium shearii | Species | Aspergillaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO19913 | Rhynchophorus ferrugineus | Species | Curculionidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26917 | Quercus rubra | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11749 | Eria mollis | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO986 | Rattus rattus | Species | Muridae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20490 | Erythrophleum ivorense | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11391 | Polygonum cuspidatum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO15472 | Oryctes monoceros | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO6079 | Adalia bipunctata | Species | Coccinellidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8605 | Xalocoa ocellata | Species | Graphidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4158 | Hymenoxys lemmonii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9105 | Polygonum hypoleucum | Species | Polygonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8819 | Nepeta parnassica | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4997 | Xerochrysum viscosum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration| Organism ID | Organism Name | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
|---|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Biological Activity
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|---|---|---|---|---|---|---|---|
| NPT108 | Individual protein | Estrogen receptor alpha | Homo sapiens | IC50 | = | 20000.0 | nM | PMID[11459643] |
| NPT108 | Individual protein | Estrogen receptor alpha | Homo sapiens | Ki | = | 5700.0 | nM | PMID[11459643] |
| NPT248 | Individual protein | Estrogen receptor beta | Homo sapiens | IC50 | = | 62000.0 | nM | PMID[11459643] |
| NPT248 | Individual protein | Estrogen receptor beta | Homo sapiens | Ki | = | 18000.0 | nM | PMID[11459643] |
| NPT544 | Protein family | Estrogen receptor | Homo sapiens | Control | < | 113.1 | % | PMID[11459643] |
| NPT544 | Protein family | Estrogen receptor | Homo sapiens | Control | < | 118.5 | % | PMID[11459643] |
| NPT544 | Protein family | Estrogen receptor | Homo sapiens | Control | < | 159.8 | % | PMID[11459643] |
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|---|---|---|---|---|---|---|---|
| NPT2 | Others | Unspecified | n.a. | IC50 | > | 800.0 | ug.mL-1 | PMID[1517743] |
| NPT2 | Others | Unspecified | n.a. | Activity | < | 50.0 | % | PMID[7494143] |
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
Experimental ADME
| Experiment Model | Experiment Tissue | ADME Type | ADME Relation | ADME Value | ADME Unit | Reference |
|---|
Experimental Toxicity
| Experiment Model | Experiment Organism | Toxicity Type | Toxicity Relation | Toxicity Value | Toxicity Unit | Reference |
|---|
Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria
| Hepatotoxicity | Carcinogenicity | Mutagenicity | Cardiotoxicity | Respiratory Toxicity | Eye Irritation | Endocrine Disruption |
|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]
  Chemically structural similarityTop-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)
Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.
●  The left chart: Distribution of similarity level between NPC271385 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Natural Product ID |
|---|---|---|
| 0.7879 | Intermediate Similarity | NPC76128 |
| 0.7846 | Intermediate Similarity | NPC278329 |
| 0.7313 | Intermediate Similarity | NPC5029 |
| 0.7231 | Intermediate Similarity | NPC111536 |
| 0.6812 | Remote Similarity | NPC30432 |
| 0.6571 | Remote Similarity | NPC146837 |
| 0.6538 | Remote Similarity | NPC46958 |
| 0.6479 | Remote Similarity | NPC101116 |
| 0.6269 | Remote Similarity | NPC483778 |
| 0.6216 | Remote Similarity | NPC178281 |
| 0.5942 | Remote Similarity | NPC605264 |
| 0.5902 | Remote Similarity | NPC245584 |
| 0.5733 | Remote Similarity | NPC212099 |
| 0.5625 | Remote Similarity | NPC12308 |
| 0.5493 | Remote Similarity | NPC199335 |
| 0.5429 | Remote Similarity | NPC222455 |
| 0.5429 | Remote Similarity | NPC106025 |
| 0.5357 | Remote Similarity | NPC105591 |
| 0.5325 | Remote Similarity | NPC199357 |
| 0.5278 | Remote Similarity | NPC477240 |
| 0.527 | Remote Similarity | NPC600107 |
| 0.5205 | Remote Similarity | NPC190217 |
| 0.5195 | Remote Similarity | NPC212290 |
| 0.5195 | Remote Similarity | NPC604833 |
| 0.5147 | Remote Similarity | NPC40377 |
| 0.5135 | Remote Similarity | NPC610808 |
| 0.5077 | Remote Similarity | NPC152722 |
| 0.5068 | Remote Similarity | NPC475628 |
| 0.5067 | Remote Similarity | NPC604892 |
| 0.5065 | Remote Similarity | NPC606849 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC271385 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Drug ID | Developmental Stage |
|---|---|---|---|
| NPD |
  Bioactivity similaritySimilarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.
