Structure

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC315058

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT5885 Individual Protein Phospho-N-acetylmuramoyl-pentapeptide-transferase Escherichia coli K-12 IC50 = 0.01 ug.mL-1 PMID[541304]
NPT5885 Individual Protein Phospho-N-acetylmuramoyl-pentapeptide-transferase Escherichia coli K-12 IC50 = 0.01 ug.mL-1 PMID[541305]
NPT5885 Individual Protein Phospho-N-acetylmuramoyl-pentapeptide-transferase Escherichia coli K-12 IC50 = 18.0 nM PMID[541305]
NPT91 Cell Line KB Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT2245 Cell Line SiHa Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT393 Cell Line HCT-116 Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT579 Cell Line DLD-1 Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT2309 Cell Line CAPAN-1 Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT461 Cell Line PANC-1 Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT2297 Cell Line ASPC1 Homo sapiens IC50 > 50000.0 nM PMID[541306]
NPT189 Cell Line Vero Chlorocebus aethiops IC50 > 50000.0 nM PMID[541306]
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC = 12.5 ug.mL-1 PMID[541304]
NPT1513 Organism Mycobacterium avium Mycobacterium avium MIC = 8.0 ug.mL-1 PMID[541304]
NPT86 Organism Mycobacterium intracellulare Mycobacterium intracellulare MIC = 8.0 ug.mL-1 PMID[541304]
NPT1828 Organism Mycobacterium kansasii Mycobacterium kansasii MIC = 8.0 ug.mL-1 PMID[541304]
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC = 12.5 ug.mL-1 PMID[541305]
NPT1513 Organism Mycobacterium avium Mycobacterium avium MIC = 8.0 ug.mL-1 PMID[541305]
NPT86 Organism Mycobacterium intracellulare Mycobacterium intracellulare MIC = 8.0 ug.mL-1 PMID[541305]
NPT1828 Organism Mycobacterium kansasii Mycobacterium kansasii MIC = 8.0 ug.mL-1 PMID[541305]
NPT2 Others Unspecified IC50 = 130.0 nM PMID[541306]
NPT2 Others Unspecified IC50 > 50000.0 nM PMID[541306]
NPT27560 SINGLE PROTEIN UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase Homo sapiens IC50 > 50000.0 nM PMID[541306]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC315058 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9746 High Similarity NPC313962
0.7258 Intermediate Similarity NPC149843
0.7258 Intermediate Similarity NPC155087
0.687 Remote Similarity NPC89051
0.687 Remote Similarity NPC43246
0.6693 Remote Similarity NPC329277
0.6642 Remote Similarity NPC325750
0.6641 Remote Similarity NPC478024
0.6617 Remote Similarity NPC313813
0.6612 Remote Similarity NPC36985
0.6612 Remote Similarity NPC17892
0.6609 Remote Similarity NPC106780
0.6557 Remote Similarity NPC283698
0.6557 Remote Similarity NPC73765
0.6525 Remote Similarity NPC210456
0.6525 Remote Similarity NPC163352
0.6475 Remote Similarity NPC284651
0.6443 Remote Similarity NPC247776
0.6443 Remote Similarity NPC475278
0.6443 Remote Similarity NPC309450
0.6443 Remote Similarity NPC304299
0.6443 Remote Similarity NPC475266
0.6417 Remote Similarity NPC315063
0.6393 Remote Similarity NPC182632
0.6393 Remote Similarity NPC282705
0.6364 Remote Similarity NPC324390
0.6333 Remote Similarity NPC71866
0.6329 Remote Similarity NPC316244
0.6311 Remote Similarity NPC322594
0.6311 Remote Similarity NPC320249
0.629 Remote Similarity NPC35269
0.629 Remote Similarity NPC23454
0.629 Remote Similarity NPC262312
0.629 Remote Similarity NPC70323
0.6281 Remote Similarity NPC171116
0.6279 Remote Similarity NPC55336
0.6271 Remote Similarity NPC112842
0.6271 Remote Similarity NPC228638
0.6271 Remote Similarity NPC71339
0.626 Remote Similarity NPC15851
0.626 Remote Similarity NPC475603
0.626 Remote Similarity NPC309898
0.626 Remote Similarity NPC475125
0.626 Remote Similarity NPC61894
0.626 Remote Similarity NPC473581
0.626 Remote Similarity NPC186840
0.626 Remote Similarity NPC111567
0.626 Remote Similarity NPC263545
0.626 Remote Similarity NPC473950
0.626 Remote Similarity NPC473604
0.6259 Remote Similarity NPC245534
0.6241 Remote Similarity NPC251122
0.619 Remote Similarity NPC45313
0.6179 Remote Similarity NPC74672
0.6179 Remote Similarity NPC43074
0.6179 Remote Similarity NPC209047
0.6179 Remote Similarity NPC242503
0.6179 Remote Similarity NPC139782
0.616 Remote Similarity NPC157353
0.616 Remote Similarity NPC3568
0.616 Remote Similarity NPC282088
0.616 Remote Similarity NPC156782
0.616 Remote Similarity NPC54961
0.616 Remote Similarity NPC192066
0.616 Remote Similarity NPC17290
0.616 Remote Similarity NPC256570
0.616 Remote Similarity NPC158445
0.6136 Remote Similarity NPC315426
0.6127 Remote Similarity NPC36254
0.6107 Remote Similarity NPC74035
0.6099 Remote Similarity NPC273185
0.608 Remote Similarity NPC324516
0.608 Remote Similarity NPC318166
0.6063 Remote Similarity NPC183449
0.6063 Remote Similarity NPC8098
0.6063 Remote Similarity NPC197294
0.6061 Remote Similarity NPC475918
0.6048 Remote Similarity NPC327344
0.6032 Remote Similarity NPC317639
0.5987 Remote Similarity NPC315210
0.5987 Remote Similarity NPC315848
0.5985 Remote Similarity NPC241597
0.5984 Remote Similarity NPC62927
0.5984 Remote Similarity NPC190334
0.5972 Remote Similarity NPC471263
0.5969 Remote Similarity NPC328914
0.5954 Remote Similarity NPC477198
0.5948 Remote Similarity NPC329077
0.594 Remote Similarity NPC201128
0.5912 Remote Similarity NPC314306
0.5906 Remote Similarity NPC318142
0.5814 Remote Similarity NPC328779
0.5781 Remote Similarity NPC280946
0.5781 Remote Similarity NPC226769
0.5781 Remote Similarity NPC6166
0.5767 Remote Similarity NPC477398
0.5764 Remote Similarity NPC471262
0.5763 Remote Similarity NPC325902
0.5762 Remote Similarity NPC471256
0.5746 Remote Similarity NPC166242
0.5746 Remote Similarity NPC322449
0.5746 Remote Similarity NPC189854
0.5746 Remote Similarity NPC92874
0.5746 Remote Similarity NPC62845
0.5738 Remote Similarity NPC229249
0.5736 Remote Similarity NPC120887
0.5736 Remote Similarity NPC90240
0.5734 Remote Similarity NPC470652
0.5733 Remote Similarity NPC314361
0.5724 Remote Similarity NPC471255
0.5714 Remote Similarity NPC316807
0.5704 Remote Similarity NPC325900
0.5704 Remote Similarity NPC10897
0.5697 Remote Similarity NPC317377
0.5697 Remote Similarity NPC321485
0.5692 Remote Similarity NPC475503
0.568 Remote Similarity NPC328806
0.5676 Remote Similarity NPC163783
0.5674 Remote Similarity NPC296043
0.5672 Remote Similarity NPC314398
0.5672 Remote Similarity NPC239705
0.5672 Remote Similarity NPC314413
0.5655 Remote Similarity NPC20035
0.5634 Remote Similarity NPC329216
0.5612 Remote Similarity NPC29501
0.5606 Remote Similarity NPC315170

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC315058 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6993 Remote Similarity NPD7761 Suspended
0.687 Remote Similarity NPD9581 Clinical (unspecified phase)
0.687 Remote Similarity NPD9580 Clinical (unspecified phase)
0.6807 Remote Similarity NPD1686 Approved
0.6693 Remote Similarity NPD3129 Phase 3
0.6639 Remote Similarity NPD9565 Discontinued
0.6614 Remote Similarity NPD3128 Phase 3
0.6585 Remote Similarity NPD502 Approved
0.6557 Remote Similarity NPD9639 Clinical (unspecified phase)
0.6535 Remote Similarity NPD1407 Approved
0.6525 Remote Similarity NPD241 Discontinued
0.6496 Remote Similarity NPD9557 Clinical (unspecified phase)
0.6493 Remote Similarity NPD3139 Phase 3
0.6449 Remote Similarity NPD6436 Phase 3
0.6444 Remote Similarity NPD6935 Phase 3
0.6444 Remote Similarity NPD6936 Clinical (unspecified phase)
0.6434 Remote Similarity NPD1385 Discontinued
0.6418 Remote Similarity NPD3138 Phase 3
0.6417 Remote Similarity NPD755 Phase 3
0.6417 Remote Similarity NPD841 Approved
0.6341 Remote Similarity NPD501 Phase 1
0.6328 Remote Similarity NPD1061 Clinical (unspecified phase)
0.6311 Remote Similarity NPD251 Approved
0.6277 Remote Similarity NPD7756 Clinical (unspecified phase)
0.6271 Remote Similarity NPD280 Approved
0.6202 Remote Similarity NPD244 Clinical (unspecified phase)
0.6179 Remote Similarity NPD8522 Clinical (unspecified phase)
0.6167 Remote Similarity NPD240 Phase 3
0.6154 Remote Similarity NPD9556 Approved
0.6154 Remote Similarity NPD9558 Phase 3
0.6142 Remote Similarity NPD5789 Clinical (unspecified phase)
0.6116 Remote Similarity NPD1760 Approved
0.6102 Remote Similarity NPD9561 Approved
0.6102 Remote Similarity NPD9560 Approved
0.605 Remote Similarity NPD9546 Phase 2
0.6048 Remote Similarity NPD6943 Clinical (unspecified phase)
0.6048 Remote Similarity NPD9585 Discontinued
0.6043 Remote Similarity NPD6918 Phase 1
0.6033 Remote Similarity NPD170 Approved
0.6031 Remote Similarity NPD4743 Phase 2
0.6014 Remote Similarity NPD4832 Approved
0.6014 Remote Similarity NPD4830 Approved
0.6014 Remote Similarity NPD869 Approved
0.6014 Remote Similarity NPD4831 Approved
0.6 Remote Similarity NPD238 Clinical (unspecified phase)
0.6 Remote Similarity NPD239 Phase 2
0.6 Remote Similarity NPD6421 Discontinued
0.6 Remote Similarity NPD9533 Phase 2
0.5985 Remote Similarity NPD3731 Phase 3
0.5985 Remote Similarity NPD6946 Approved
0.5984 Remote Similarity NPD9602 Phase 3
0.5984 Remote Similarity NPD9604 Approved
0.5984 Remote Similarity NPD762 Discontinued
0.5984 Remote Similarity NPD9603 Phase 3
0.5969 Remote Similarity NPD1454 Phase 3
0.5969 Remote Similarity NPD1455 Phase 3
0.5912 Remote Similarity NPD6429 Approved
0.5912 Remote Similarity NPD7914 Suspended
0.5912 Remote Similarity NPD6430 Approved
0.5909 Remote Similarity NPD8045 Clinical (unspecified phase)
0.5904 Remote Similarity NPD5219 Approved
0.5904 Remote Similarity NPD5218 Approved
0.5902 Remote Similarity NPD9562 Discovery
0.5891 Remote Similarity NPD192 Phase 2
0.5882 Remote Similarity NPD1804 Phase 2
0.5882 Remote Similarity NPD1805 Phase 2
0.5878 Remote Similarity NPD7651 Approved
0.5862 Remote Similarity NPD4816 Clinical (unspecified phase)
0.5846 Remote Similarity NPD223 Clinical (unspecified phase)
0.5821 Remote Similarity NPD1428 Phase 2
0.5808 Remote Similarity NPD4521 Clinical (unspecified phase)
0.5785 Remote Similarity NPD9559 Phase 1
0.5785 Remote Similarity NPD9529 Phase 1
0.5748 Remote Similarity NPD279 Clinical (unspecified phase)
0.5738 Remote Similarity NPD9601 Approved
0.5738 Remote Similarity NPD205 Approved
0.5692 Remote Similarity NPD6428 Approved
0.5672 Remote Similarity NPD3161 Clinical (unspecified phase)
0.5634 Remote Similarity NPD7992 Clinical (unspecified phase)
0.5615 Remote Similarity NPD514 Clinical (unspecified phase)
0.5606 Remote Similarity NPD765 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data