Structure

Physi-Chem Properties

Molecular Weight:  300.17
Volume:  336.539
LogP:  5.52
LogD:  3.916
LogS:  -4.699
# Rotatable Bonds:  6
TPSA:  57.53
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  1
# Heavy Atoms:  3

MedChem Properties

QED Drug-Likeness Score:  0.6
Synthetic Accessibility Score:  2.781
Fsp3:  0.316
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.972
MDCK Permeability:  1.577451803314034e-05
Pgp-inhibitor:  0.022
Pgp-substrate:  0.123
Human Intestinal Absorption (HIA):  0.019
20% Bioavailability (F20%):  0.862
30% Bioavailability (F30%):  0.573

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.048
Plasma Protein Binding (PPB):  92.7042007446289%
Volume Distribution (VD):  0.443
Pgp-substrate:  5.175224304199219%

ADMET: Metabolism

CYP1A2-inhibitor:  0.193
CYP1A2-substrate:  0.122
CYP2C19-inhibitor:  0.043
CYP2C19-substrate:  0.064
CYP2C9-inhibitor:  0.418
CYP2C9-substrate:  0.292
CYP2D6-inhibitor:  0.211
CYP2D6-substrate:  0.131
CYP3A4-inhibitor:  0.039
CYP3A4-substrate:  0.08

ADMET: Excretion

Clearance (CL):  11.621
Half-life (T1/2):  0.83

ADMET: Toxicity

hERG Blockers:  0.027
Human Hepatotoxicity (H-HT):  0.93
Drug-inuced Liver Injury (DILI):  0.068
AMES Toxicity:  0.006
Rat Oral Acute Toxicity:  0.048
Maximum Recommended Daily Dose:  0.283
Skin Sensitization:  0.941
Carcinogencity:  0.122
Eye Corrosion:  0.008
Eye Irritation:  0.26
Respiratory Toxicity:  0.359

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Similar NPs/Drugs  

  Natural Product: NPC243677

Natural Product ID:  NPC243677
Common Name*:   Artepillin
IUPAC Name:   (E)-3-[4-hydroxy-3,5-bis(3-methylbut-2-enyl)phenyl]prop-2-enoic acid
Synonyms:   Artepillin; Artepillin C
Standard InCHIKey:  KABCFARPAMSXCC-JXMROGBWSA-N
Standard InCHI:  InChI=1S/C19H24O3/c1-13(2)5-8-16-11-15(7-10-18(20)21)12-17(19(16)22)9-6-14(3)4/h5-7,10-12,22H,8-9H2,1-4H3,(H,20,21)/p-1/b10-7+
SMILES:  CC(=CCc1cc(/C=C/C(=O)[O-])cc(CC=C(C)C)c1O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL456309
PubChem CID:   5472440
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000476] Cinnamic acids and derivatives
        • [CHEMONTID:0001391] Hydroxycinnamic acids and derivatives
          • [CHEMONTID:0002503] Hydroxycinnamic acids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30782 Brazilian propolis n.a. n.a. n.a. n.a. n.a. n.a. DOI[10.1248/cpb.47.1521]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[10654410]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[10843587]
NPO30782 Brazilian propolis n.a. n.a. n.a. n.a. n.a. n.a. PMID[11000036]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[15568770]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16392664]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16933887]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota roots Hualien Hsien, Taiwan 2003-JUL PMID[16933887]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. n.a. n.a. PMID[17548953]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[17951038]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[18175961]
NPO13379 Schizanthus tricolor Species Solanaceae Eukaryota Aerial parts n.a. n.a. PMID[20166702]
NPO11266 Garcinia cambogia Species Clusiaceae Eukaryota n.a. exocarp n.a. PMID[21114277]
NPO13379 Schizanthus tricolor Species Solanaceae Eukaryota n.a. aerial part n.a. PMID[21171571]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. whole plant n.a. PMID[21428416]
NPO32851 brazilian green propolis Species n.a. n.a. n.a. Brazilian green propolis n.a. PMID[21865046]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[22870812]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23435948]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24295087]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. n.a. n.a. PMID[24675423]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. Bako, Ethiopia PMID[24926420]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. Enemore, Ethiopia PMID[24926420]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. Gedo, Ethiopia PMID[24926420]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. Holleta, Ethiopia PMID[24926420]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[25737008]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[27575476]
NPO3013 Clathria basilana Species Microcionidae Eukaryota n.a. n.a. n.a. PMID[29094598]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[30298740]
NPO30782 Brazilian propolis n.a. n.a. n.a. n.a. n.a. n.a. PMID[8951168]
NPO30782 Brazilian propolis n.a. n.a. n.a. n.a. Brazilian propolis n.a. PMID[9677271]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[9868163]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. Database[Article]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11842 Petasites laevigatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7541 Ormosia hosiei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11266 Garcinia cambogia Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7541 Ormosia hosiei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11842 Petasites laevigatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11266 Garcinia cambogia Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO31579 Artemisia capillaries Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7541 Ormosia hosiei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11842 Petasites laevigatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7541 Ormosia hosiei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14470 Polypodium decumanum Species Polypodiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14169 Acrocarpia paniculata Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11266 Garcinia cambogia Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13669 Hertia cheirifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13178 Ornithoglossum viride Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5280 Rubia tetragona Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12006 Apis mellifera Species Apidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13876 Cedrela salvadorensis Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14369 Pocillopora eydouxi Species Pocilloporidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9569 Licaria chrysophylla Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4700 Pertusaria truncata Species Pertusariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13379 Schizanthus tricolor Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12521 Sphaeranthus confertifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3013 Clathria basilana Species Microcionidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT453 Cell Line HT-1080 Homo sapiens ED50 = 45.47 ug ml-1 PMID[465873]
NPT165 Cell Line HeLa Homo sapiens IC50 = 7.0 ug.mL-1 PMID[465874]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 53.3 % PMID[465875]
NPT41 Individual Protein Aldose reductase Homo sapiens IC50 = 23000.0 nM PMID[465876]
NPT1270 Individual Protein Aldo-keto reductase family 1 member B10 Homo sapiens IC50 = 53000.0 nM PMID[465876]
NPT367 Cell Line MDA-N Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 87498.38 nM PMID[465877]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 19678.86 nM PMID[465877]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 76032.63 nM PMID[465877]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 31332.86 nM PMID[465877]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 76032.63 nM PMID[465877]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 76559.66 nM PMID[465877]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 43651.58 nM PMID[465877]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 76032.63 nM PMID[465877]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 81658.24 nM PMID[465877]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 66834.39 nM PMID[465877]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 73451.39 nM PMID[465877]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 47315.13 nM PMID[465877]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[465877]
NPT3504 Individual Protein Aldo-keto-reductase family 1 member C3 Homo sapiens IC50 = 1000.0 nM PMID[465878]
NPT3506 Individual Protein Aldo-keto reductase family 1 member C4 Homo sapiens Inhibition = 19.0 % PMID[465878]
NPT3507 Individual Protein Aldo-keto reductase family 1 member C2 Homo sapiens Inhibition = 13.0 % PMID[465878]
NPT3504 Individual Protein Aldo-keto-reductase family 1 member C3 Homo sapiens Ki = 680.0 nM PMID[465878]
NPT3505 Individual Protein Aldo-keto reductase family 1 member C1 Homo sapiens Inhibition = 29.0 % PMID[465878]
NPT3120 Individual Protein Serine/threonine-protein kinase PAK 1 Homo sapiens IC50 = 25000.0 nM PMID[465879]
NPT81 Cell Line A549 Homo sapiens IC50 = 25000.0 nM PMID[465879]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. ED50 = 59.32 ug ml-1 PMID[465873]
NPT2 Others Unspecified Ratio = 1.09 n.a. PMID[465875]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 80.9 % PMID[465875]
NPT2 Others Unspecified ED = 20.0 uM PMID[465879]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC243677 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9796 High Similarity NPC303141
0.97 High Similarity NPC470039
0.9592 High Similarity NPC470202
0.9412 High Similarity NPC75272
0.9412 High Similarity NPC471954
0.898 High Similarity NPC246679
0.8878 High Similarity NPC32977
0.8878 High Similarity NPC81010
0.8818 High Similarity NPC474890
0.8818 High Similarity NPC161943
0.8818 High Similarity NPC273282
0.8807 High Similarity NPC83718
0.8785 High Similarity NPC199462
0.8713 High Similarity NPC128723
0.8673 High Similarity NPC204210
0.866 High Similarity NPC70436
0.8627 High Similarity NPC253746
0.8627 High Similarity NPC225506
0.8624 High Similarity NPC114918
0.8614 High Similarity NPC77492
0.8611 High Similarity NPC228988
0.86 High Similarity NPC144682
0.86 High Similarity NPC8392
0.8598 High Similarity NPC473809
0.8586 High Similarity NPC181709
0.8559 High Similarity NPC263754
0.8559 High Similarity NPC183154
0.8532 High Similarity NPC242136
0.8529 High Similarity NPC122005
0.8529 High Similarity NPC252821
0.8519 High Similarity NPC139946
0.8519 High Similarity NPC228609
0.85 High Similarity NPC289769
0.8491 Intermediate Similarity NPC228737
0.8476 Intermediate Similarity NPC138942
0.8469 Intermediate Similarity NPC123273
0.8469 Intermediate Similarity NPC177420
0.8469 Intermediate Similarity NPC242240
0.8469 Intermediate Similarity NPC318325
0.8469 Intermediate Similarity NPC280347
0.8462 Intermediate Similarity NPC135784
0.8462 Intermediate Similarity NPC304638
0.8462 Intermediate Similarity NPC168829
0.8431 Intermediate Similarity NPC201967
0.8426 Intermediate Similarity NPC183700
0.8416 Intermediate Similarity NPC26244
0.8416 Intermediate Similarity NPC257182
0.8411 Intermediate Similarity NPC279887
0.8411 Intermediate Similarity NPC68260
0.8384 Intermediate Similarity NPC55561
0.8381 Intermediate Similarity NPC288411
0.8381 Intermediate Similarity NPC93831
0.8367 Intermediate Similarity NPC113460
0.8367 Intermediate Similarity NPC25493
0.8365 Intermediate Similarity NPC472585
0.8364 Intermediate Similarity NPC211421
0.8362 Intermediate Similarity NPC174991
0.835 Intermediate Similarity NPC130193
0.835 Intermediate Similarity NPC245561
0.8333 Intermediate Similarity NPC473388
0.8333 Intermediate Similarity NPC26013
0.8333 Intermediate Similarity NPC283711
0.8333 Intermediate Similarity NPC282855
0.8318 Intermediate Similarity NPC260952
0.8317 Intermediate Similarity NPC128062
0.8317 Intermediate Similarity NPC151715
0.8304 Intermediate Similarity NPC471936
0.8302 Intermediate Similarity NPC99557
0.8302 Intermediate Similarity NPC219286
0.8288 Intermediate Similarity NPC197513
0.8288 Intermediate Similarity NPC41851
0.8286 Intermediate Similarity NPC108497
0.8283 Intermediate Similarity NPC258219
0.8276 Intermediate Similarity NPC475192
0.8276 Intermediate Similarity NPC67300
0.8269 Intermediate Similarity NPC52472
0.8265 Intermediate Similarity NPC407
0.8265 Intermediate Similarity NPC23167
0.8265 Intermediate Similarity NPC307235
0.8257 Intermediate Similarity NPC63345
0.8257 Intermediate Similarity NPC208229
0.8252 Intermediate Similarity NPC140619
0.8241 Intermediate Similarity NPC61885
0.8241 Intermediate Similarity NPC206341
0.8241 Intermediate Similarity NPC31274
0.8241 Intermediate Similarity NPC63698
0.8235 Intermediate Similarity NPC286006
0.823 Intermediate Similarity NPC122117
0.8224 Intermediate Similarity NPC69332
0.8224 Intermediate Similarity NPC95178
0.8224 Intermediate Similarity NPC29989
0.8224 Intermediate Similarity NPC271274
0.819 Intermediate Similarity NPC51015
0.819 Intermediate Similarity NPC94343
0.8182 Intermediate Similarity NPC470355
0.8173 Intermediate Similarity NPC171843
0.8165 Intermediate Similarity NPC88141
0.8165 Intermediate Similarity NPC98392
0.8165 Intermediate Similarity NPC95172
0.8165 Intermediate Similarity NPC79543
0.8163 Intermediate Similarity NPC155393
0.8163 Intermediate Similarity NPC197783
0.8151 Intermediate Similarity NPC473751
0.8137 Intermediate Similarity NPC316301
0.8137 Intermediate Similarity NPC27323
0.8137 Intermediate Similarity NPC152415
0.8136 Intermediate Similarity NPC184219
0.8131 Intermediate Similarity NPC127676
0.8131 Intermediate Similarity NPC227255
0.8119 Intermediate Similarity NPC304541
0.8119 Intermediate Similarity NPC270547
0.8119 Intermediate Similarity NPC306074
0.8119 Intermediate Similarity NPC45040
0.8113 Intermediate Similarity NPC13426
0.8113 Intermediate Similarity NPC68269
0.8108 Intermediate Similarity NPC286222
0.8103 Intermediate Similarity NPC131868
0.8103 Intermediate Similarity NPC241001
0.8103 Intermediate Similarity NPC164852
0.81 Intermediate Similarity NPC98772
0.8095 Intermediate Similarity NPC248396
0.8095 Intermediate Similarity NPC129373
0.8095 Intermediate Similarity NPC48730
0.8091 Intermediate Similarity NPC222905
0.8091 Intermediate Similarity NPC296683
0.8087 Intermediate Similarity NPC473767
0.8083 Intermediate Similarity NPC243688
0.8081 Intermediate Similarity NPC184169
0.8077 Intermediate Similarity NPC260000
0.8077 Intermediate Similarity NPC152097
0.8073 Intermediate Similarity NPC262365
0.807 Intermediate Similarity NPC278652
0.807 Intermediate Similarity NPC160199
0.807 Intermediate Similarity NPC174087
0.8061 Intermediate Similarity NPC248817
0.8061 Intermediate Similarity NPC286904
0.8061 Intermediate Similarity NPC175313
0.8056 Intermediate Similarity NPC70843
0.8056 Intermediate Similarity NPC1786
0.8056 Intermediate Similarity NPC1075
0.8056 Intermediate Similarity NPC294902
0.8039 Intermediate Similarity NPC138117
0.8039 Intermediate Similarity NPC162314
0.8039 Intermediate Similarity NPC3358
0.8039 Intermediate Similarity NPC325292
0.8039 Intermediate Similarity NPC94139
0.8039 Intermediate Similarity NPC210497
0.8039 Intermediate Similarity NPC147284
0.8039 Intermediate Similarity NPC306884
0.8037 Intermediate Similarity NPC2518
0.8037 Intermediate Similarity NPC261573
0.8037 Intermediate Similarity NPC120693
0.8037 Intermediate Similarity NPC8931
0.8036 Intermediate Similarity NPC296144
0.8036 Intermediate Similarity NPC28784
0.8034 Intermediate Similarity NPC251259
0.802 Intermediate Similarity NPC300017
0.802 Intermediate Similarity NPC192
0.8018 Intermediate Similarity NPC225679
0.8018 Intermediate Similarity NPC4493
0.8018 Intermediate Similarity NPC165770
0.8018 Intermediate Similarity NPC95716
0.8018 Intermediate Similarity NPC476632
0.8017 Intermediate Similarity NPC478121
0.8017 Intermediate Similarity NPC193203
0.8017 Intermediate Similarity NPC229894
0.8 Intermediate Similarity NPC80027
0.8 Intermediate Similarity NPC132078
0.8 Intermediate Similarity NPC92730
0.8 Intermediate Similarity NPC280869
0.8 Intermediate Similarity NPC216468
0.8 Intermediate Similarity NPC51333
0.8 Intermediate Similarity NPC260775
0.8 Intermediate Similarity NPC309434
0.8 Intermediate Similarity NPC203124
0.8 Intermediate Similarity NPC78119
0.7983 Intermediate Similarity NPC89630
0.7983 Intermediate Similarity NPC265413
0.7983 Intermediate Similarity NPC10154
0.7982 Intermediate Similarity NPC226699
0.7982 Intermediate Similarity NPC151477
0.7981 Intermediate Similarity NPC216520
0.7981 Intermediate Similarity NPC82664
0.7981 Intermediate Similarity NPC292730
0.7981 Intermediate Similarity NPC132271
0.7966 Intermediate Similarity NPC121168
0.7965 Intermediate Similarity NPC473931
0.7965 Intermediate Similarity NPC474050
0.7965 Intermediate Similarity NPC474114
0.7963 Intermediate Similarity NPC13495
0.7963 Intermediate Similarity NPC474839
0.7959 Intermediate Similarity NPC265146
0.7959 Intermediate Similarity NPC124436
0.7951 Intermediate Similarity NPC117899
0.7946 Intermediate Similarity NPC26615
0.7946 Intermediate Similarity NPC43525
0.7946 Intermediate Similarity NPC17693
0.7946 Intermediate Similarity NPC46940
0.7946 Intermediate Similarity NPC228425
0.7944 Intermediate Similarity NPC269212

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC243677 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.86 High Similarity NPD1809 Phase 2
0.8586 High Similarity NPD845 Approved
0.8416 Intermediate Similarity NPD2859 Approved
0.8416 Intermediate Similarity NPD2860 Approved
0.8317 Intermediate Similarity NPD2933 Approved
0.8317 Intermediate Similarity NPD2934 Approved
0.819 Intermediate Similarity NPD846 Approved
0.819 Intermediate Similarity NPD940 Approved
0.8174 Intermediate Similarity NPD4626 Approved
0.8173 Intermediate Similarity NPD3020 Approved
0.8137 Intermediate Similarity NPD1432 Clinical (unspecified phase)
0.8087 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.8058 Intermediate Similarity NPD844 Approved
0.7959 Intermediate Similarity NPD111 Approved
0.7857 Intermediate Similarity NPD6124 Clinical (unspecified phase)
0.7818 Intermediate Similarity NPD9265 Clinical (unspecified phase)
0.781 Intermediate Similarity NPD288 Approved
0.7778 Intermediate Similarity NPD5691 Approved
0.7769 Intermediate Similarity NPD1164 Approved
0.7757 Intermediate Similarity NPD289 Clinical (unspecified phase)
0.7748 Intermediate Similarity NPD9266 Approved
0.7748 Intermediate Similarity NPD74 Approved
0.7727 Intermediate Similarity NPD3134 Approved
0.7719 Intermediate Similarity NPD7159 Clinical (unspecified phase)
0.7672 Intermediate Similarity NPD9493 Approved
0.7658 Intermediate Similarity NPD9267 Approved
0.7658 Intermediate Similarity NPD9264 Approved
0.7658 Intermediate Similarity NPD9263 Approved
0.7632 Intermediate Similarity NPD7635 Approved
0.7589 Intermediate Similarity NPD6831 Clinical (unspecified phase)
0.7586 Intermediate Similarity NPD256 Approved
0.7586 Intermediate Similarity NPD255 Approved
0.7583 Intermediate Similarity NPD422 Phase 1
0.7542 Intermediate Similarity NPD9545 Approved
0.7522 Intermediate Similarity NPD3022 Approved
0.7522 Intermediate Similarity NPD3021 Approved
0.75 Intermediate Similarity NPD1358 Approved
0.75 Intermediate Similarity NPD2342 Discontinued
0.75 Intermediate Similarity NPD4208 Discontinued
0.75 Intermediate Similarity NPD4212 Discontinued
0.7462 Intermediate Similarity NPD2935 Discontinued
0.744 Intermediate Similarity NPD4207 Discontinued
0.7426 Intermediate Similarity NPD5734 Clinical (unspecified phase)
0.7395 Intermediate Similarity NPD5304 Approved
0.7395 Intermediate Similarity NPD5303 Approved
0.7368 Intermediate Similarity NPD4750 Phase 3
0.7355 Intermediate Similarity NPD3496 Discontinued
0.7344 Intermediate Similarity NPD4060 Phase 1
0.7339 Intermediate Similarity NPD2797 Approved
0.7333 Intermediate Similarity NPD4235 Clinical (unspecified phase)
0.7328 Intermediate Similarity NPD5406 Approved
0.7328 Intermediate Similarity NPD5408 Approved
0.7328 Intermediate Similarity NPD5535 Approved
0.7328 Intermediate Similarity NPD5405 Approved
0.7328 Intermediate Similarity NPD5404 Approved
0.7321 Intermediate Similarity NPD9697 Approved
0.7297 Intermediate Similarity NPD9261 Approved
0.7273 Intermediate Similarity NPD3019 Approved
0.7273 Intermediate Similarity NPD3028 Approved
0.7273 Intermediate Similarity NPD4589 Approved
0.7273 Intermediate Similarity NPD2932 Approved
0.7265 Intermediate Similarity NPD2228 Approved
0.7265 Intermediate Similarity NPD2229 Approved
0.7265 Intermediate Similarity NPD2234 Approved
0.7252 Intermediate Similarity NPD2799 Discontinued
0.725 Intermediate Similarity NPD1759 Phase 1
0.7238 Intermediate Similarity NPD9256 Approved
0.7238 Intermediate Similarity NPD9258 Approved
0.7232 Intermediate Similarity NPD9608 Approved
0.7232 Intermediate Similarity NPD9610 Approved
0.7227 Intermediate Similarity NPD9568 Approved
0.7222 Intermediate Similarity NPD5736 Approved
0.7213 Intermediate Similarity NPD3143 Discontinued
0.7213 Intermediate Similarity NPD3847 Discontinued
0.7203 Intermediate Similarity NPD5951 Approved
0.7203 Intermediate Similarity NPD9281 Approved
0.7182 Intermediate Similarity NPD2066 Phase 3
0.7177 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7167 Intermediate Similarity NPD1758 Phase 1
0.7164 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7154 Intermediate Similarity NPD5124 Phase 1
0.7154 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD1929 Approved
0.7143 Intermediate Similarity NPD6671 Approved
0.7143 Intermediate Similarity NPD1930 Approved
0.7143 Intermediate Similarity NPD1931 Clinical (unspecified phase)
0.713 Intermediate Similarity NPD2684 Approved
0.7117 Intermediate Similarity NPD1242 Phase 1
0.7113 Intermediate Similarity NPD9716 Approved
0.7111 Intermediate Similarity NPD7003 Approved
0.7107 Intermediate Similarity NPD7330 Discontinued
0.7107 Intermediate Similarity NPD3091 Approved
0.7105 Intermediate Similarity NPD1445 Approved
0.7105 Intermediate Similarity NPD1444 Approved
0.7097 Intermediate Similarity NPD9717 Approved
0.7097 Intermediate Similarity NPD3070 Discontinued
0.7091 Intermediate Similarity NPD9273 Approved
0.7083 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD405 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD2688 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD3971 Phase 1
0.7054 Intermediate Similarity NPD3268 Approved
0.7054 Intermediate Similarity NPD3764 Approved
0.7054 Intermediate Similarity NPD2313 Discontinued
0.7037 Intermediate Similarity NPD5122 Clinical (unspecified phase)
0.7034 Intermediate Similarity NPD1138 Approved
0.7016 Intermediate Similarity NPD1201 Approved
0.7 Intermediate Similarity NPD6663 Approved
0.7 Intermediate Similarity NPD4248 Discontinued
0.6992 Remote Similarity NPD4059 Approved
0.6991 Remote Similarity NPD6647 Phase 2
0.6991 Remote Similarity NPD9500 Approved
0.6984 Remote Similarity NPD1283 Approved
0.6981 Remote Similarity NPD800 Approved
0.6967 Remote Similarity NPD1894 Discontinued
0.6949 Remote Similarity NPD228 Approved
0.6949 Remote Similarity NPD1137 Approved
0.6949 Remote Similarity NPD1139 Approved
0.6942 Remote Similarity NPD7636 Approved
0.6937 Remote Similarity NPD9495 Approved
0.693 Remote Similarity NPD5909 Discontinued
0.6929 Remote Similarity NPD1135 Approved
0.6929 Remote Similarity NPD1203 Approved
0.6929 Remote Similarity NPD1134 Approved
0.6929 Remote Similarity NPD1470 Approved
0.6929 Remote Similarity NPD1133 Approved
0.6929 Remote Similarity NPD1129 Approved
0.6929 Remote Similarity NPD1131 Approved
0.6923 Remote Similarity NPD9380 Clinical (unspecified phase)
0.6923 Remote Similarity NPD6798 Discontinued
0.6923 Remote Similarity NPD1792 Phase 2
0.6916 Remote Similarity NPD1086 Approved
0.6916 Remote Similarity NPD1089 Approved
0.6916 Remote Similarity NPD1090 Approved
0.6911 Remote Similarity NPD4093 Discontinued
0.6905 Remote Similarity NPD4379 Clinical (unspecified phase)
0.6893 Remote Similarity NPD9491 Approved
0.6891 Remote Similarity NPD7843 Approved
0.688 Remote Similarity NPD3092 Approved
0.688 Remote Similarity NPD1535 Discovery
0.6875 Remote Similarity NPD257 Approved
0.6875 Remote Similarity NPD2798 Approved
0.6875 Remote Similarity NPD258 Approved
0.6861 Remote Similarity NPD8166 Discontinued
0.686 Remote Similarity NPD6387 Discontinued
0.6857 Remote Similarity NPD9257 Approved
0.6857 Remote Similarity NPD9259 Approved
0.6855 Remote Similarity NPD2286 Discontinued
0.6855 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6855 Remote Similarity NPD1778 Approved
0.6855 Remote Similarity NPD7163 Clinical (unspecified phase)
0.685 Remote Similarity NPD3225 Approved
0.6846 Remote Similarity NPD3136 Phase 2
0.6837 Remote Similarity NPD9087 Approved
0.6833 Remote Similarity NPD1241 Discontinued
0.6825 Remote Similarity NPD1481 Phase 2
0.6822 Remote Similarity NPD5347 Phase 2
0.6822 Remote Similarity NPD5346 Phase 2
0.6818 Remote Similarity NPD1693 Approved
0.6818 Remote Similarity NPD6048 Clinical (unspecified phase)
0.6818 Remote Similarity NPD2203 Discontinued
0.6818 Remote Similarity NPD1240 Approved
0.6818 Remote Similarity NPD6049 Phase 2
0.6815 Remote Similarity NPD4477 Approved
0.6815 Remote Similarity NPD4476 Approved
0.68 Remote Similarity NPD9294 Approved
0.6794 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6794 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6792 Remote Similarity NPD4793 Discontinued
0.6789 Remote Similarity NPD1088 Approved
0.6783 Remote Similarity NPD1237 Approved
0.678 Remote Similarity NPD5451 Approved
0.6777 Remote Similarity NPD2629 Approved
0.6777 Remote Similarity NPD1476 Clinical (unspecified phase)
0.6777 Remote Similarity NPD690 Clinical (unspecified phase)
0.6767 Remote Similarity NPD6355 Discontinued
0.6765 Remote Similarity NPD2343 Clinical (unspecified phase)
0.6765 Remote Similarity NPD7266 Discontinued
0.6765 Remote Similarity NPD2346 Discontinued
0.6752 Remote Similarity NPD290 Approved
0.675 Remote Similarity NPD9379 Approved
0.675 Remote Similarity NPD821 Approved
0.675 Remote Similarity NPD5277 Phase 2
0.675 Remote Similarity NPD9377 Approved
0.6748 Remote Similarity NPD16 Approved
0.6748 Remote Similarity NPD856 Approved
0.6746 Remote Similarity NPD1281 Approved
0.6746 Remote Similarity NPD1611 Approved
0.6744 Remote Similarity NPD3691 Phase 2
0.6744 Remote Similarity NPD3690 Phase 2
0.6742 Remote Similarity NPD5729 Clinical (unspecified phase)
0.6741 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6741 Remote Similarity NPD4308 Phase 3
0.6739 Remote Similarity NPD3400 Discontinued
0.6739 Remote Similarity NPD3750 Approved
0.6739 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6738 Remote Similarity NPD5049 Phase 3
0.6733 Remote Similarity NPD9088 Approved
0.6727 Remote Similarity NPD1202 Approved
0.6723 Remote Similarity NPD2181 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data