Structure

Physi-Chem Properties

Molecular Weight:  710.26
Volume:  685.311
LogP:  3.393
LogD:  1.339
LogS:  -2.702
# Rotatable Bonds:  5
TPSA:  221.9
# H-Bond Aceptor:  14
# H-Bond Donor:  7
# Rings:  7
# Heavy Atoms:  14

MedChem Properties

QED Drug-Likeness Score:  0.222
Synthetic Accessibility Score:  6.251
Fsp3:  0.514
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.255
MDCK Permeability:  1.8699749489314854e-05
Pgp-inhibitor:  0.937
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  0.048
20% Bioavailability (F20%):  0.405
30% Bioavailability (F30%):  0.985

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.119
Plasma Protein Binding (PPB):  96.76459503173828%
Volume Distribution (VD):  0.65
Pgp-substrate:  4.9565958976745605%

ADMET: Metabolism

CYP1A2-inhibitor:  0.019
CYP1A2-substrate:  0.908
CYP2C19-inhibitor:  0.016
CYP2C19-substrate:  0.32
CYP2C9-inhibitor:  0.06
CYP2C9-substrate:  0.119
CYP2D6-inhibitor:  0.001
CYP2D6-substrate:  0.049
CYP3A4-inhibitor:  0.535
CYP3A4-substrate:  0.876

ADMET: Excretion

Clearance (CL):  7.137
Half-life (T1/2):  0.477

ADMET: Toxicity

hERG Blockers:  0.09
Human Hepatotoxicity (H-HT):  0.913
Drug-inuced Liver Injury (DILI):  0.948
AMES Toxicity:  0.311
Rat Oral Acute Toxicity:  0.235
Maximum Recommended Daily Dose:  0.974
Skin Sensitization:  0.644
Carcinogencity:  0.908
Eye Corrosion:  0.003
Eye Irritation:  0.012
Respiratory Toxicity:  0.382

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC19056

Natural Product ID:  NPC19056
Common Name*:   Saquayamycin G
IUPAC Name:   (3R,4aR,12bS)-9-[(2R,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]-4a,8,12b-trihydroxy-3-methyl-3-[(2S,5S,6S)-6-methyl-5-[[(2R,6S)-6-methyl-5-oxo-2H-pyran-2-yl]oxy]oxan-2-yl]oxy-2,4-dihydrobenzo[a]anthracene-1,7,12-trione
Synonyms:   Saquayamycin G
Standard InCHIKey:  RKJBESAIGDWQII-UKRVPBRBSA-N
Standard InCHI:  InChI=1S/C37H42O14/c1-16-22(38)7-9-27(48-16)50-24-8-10-28(49-17(24)2)51-35(4)14-26(40)37(46)30-21(11-12-36(37,45)15-35)33(43)29-20(34(30)44)6-5-19(32(29)42)25-13-23(39)31(41)18(3)47-25/h5-7,9,11-12,16-18,23-25,27-28,31,39,41-42,45-46H,8,10,13-15H2,1-4H3/t16-,17-,18+,23+,24-,25+,27-,28-,31+,35-,36-,37-/m0/s1
SMILES:  C[C@@H]1O[C@H](CC[C@@H]1O[C@H]1C=CC(=O)[C@@H](O1)C)O[C@@]1(C)CC(=O)[C@]2([C@](C1)(O)C=CC1=C2C(=O)c2c(C1=O)c(O)c(cc2)[C@H]1C[C@@H](O)[C@@H]([C@H](O1)C)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2071325
PubChem CID:   60201537
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003415] Angucyclines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344559]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344578]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10348041]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10604756]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10695669]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10724004]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10994816]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11099231]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11132958]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11374972]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11473415]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14738393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Australian n.a. PMID[15497950]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15813185]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844966]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15974616]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16180833]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[1666120]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724845]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16830891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16872146]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17125235]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17315965]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17551212]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17608531]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17844998]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17887721]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17917237]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18044841]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Indonesian n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18205372]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Northwest Territories, Canada 1995 PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18666798]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18776684]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19007176]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19129624]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19191549]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19856955]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19883065]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20092333]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20545334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20836523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028889]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21090727]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21314175]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21639131]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21728289]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21751787]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21807523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21873059]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21879726]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[22145663]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22574670]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22583058]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22591466]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22758660]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22775474]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23387796]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23662937]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24592993]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24754815]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24878306]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24964393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25211234]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25455147]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25495422]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25537064]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25918793]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25934225]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26035239]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26465675]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26798949]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26905826]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31013087]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31298537]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31894983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32298122]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8501018]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[8784423]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931733]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8982334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031666]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031676]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066767]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066768]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9186568]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9531983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[9711246]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT306 Cell Line PC-3 Homo sapiens GI50 = 553.5 nM PMID[543131]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 6718.0 nM PMID[543131]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC19056 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC470583
0.9878 High Similarity NPC115447
0.9878 High Similarity NPC470581
0.9878 High Similarity NPC470582
0.9878 High Similarity NPC266513
0.9815 High Similarity NPC470580
0.9758 High Similarity NPC83331
0.9755 High Similarity NPC270027
0.9699 High Similarity NPC187441
0.9699 High Similarity NPC283980
0.9448 High Similarity NPC329647
0.9448 High Similarity NPC470735
0.9281 High Similarity NPC183441
0.9212 High Similarity NPC478026
0.9172 High Similarity NPC70862
0.9167 High Similarity NPC294501
0.9153 High Similarity NPC108487
0.9123 High Similarity NPC72783
0.9118 High Similarity NPC176246
0.9107 High Similarity NPC478021
0.9096 High Similarity NPC478022
0.9096 High Similarity NPC478020
0.9048 High Similarity NPC175477
0.9045 High Similarity NPC133775
0.9 High Similarity NPC65118
0.8977 High Similarity NPC314672
0.8944 High Similarity NPC131405
0.8902 High Similarity NPC478027
0.88 High Similarity NPC313452
0.8795 High Similarity NPC53139
0.8765 High Similarity NPC63470
0.8743 High Similarity NPC315221
0.8721 High Similarity NPC315619
0.8715 High Similarity NPC48474
0.8713 High Similarity NPC246274
0.8678 High Similarity NPC475246
0.8678 High Similarity NPC46958
0.8636 High Similarity NPC475161
0.8636 High Similarity NPC477860
0.8623 High Similarity NPC208651
0.8623 High Similarity NPC206641
0.8621 High Similarity NPC223735
0.8621 High Similarity NPC307754
0.8621 High Similarity NPC3718
0.8603 High Similarity NPC478035
0.8596 High Similarity NPC87583
0.858 High Similarity NPC58538
0.8571 High Similarity NPC232818
0.8571 High Similarity NPC198893
0.8571 High Similarity NPC102053
0.8571 High Similarity NPC314489
0.8571 High Similarity NPC289876
0.8563 High Similarity NPC203751
0.8563 High Similarity NPC213052
0.8563 High Similarity NPC154986
0.8554 High Similarity NPC312482
0.8529 High Similarity NPC187934
0.8529 High Similarity NPC97637
0.8525 High Similarity NPC313274
0.8523 High Similarity NPC477682
0.8523 High Similarity NPC477683
0.8508 High Similarity NPC321046
0.8508 High Similarity NPC478034
0.8506 High Similarity NPC76128
0.8506 High Similarity NPC111536
0.8506 High Similarity NPC30432
0.8506 High Similarity NPC5029
0.8506 High Similarity NPC271385
0.8503 High Similarity NPC3449
0.8497 Intermediate Similarity NPC5319
0.8476 Intermediate Similarity NPC112816
0.8475 Intermediate Similarity NPC299149
0.8475 Intermediate Similarity NPC245059
0.8475 Intermediate Similarity NPC114257
0.8475 Intermediate Similarity NPC277710
0.8475 Intermediate Similarity NPC84494
0.8475 Intermediate Similarity NPC153578
0.8471 Intermediate Similarity NPC317544
0.8466 Intermediate Similarity NPC475233
0.8466 Intermediate Similarity NPC136878
0.8462 Intermediate Similarity NPC314459
0.8462 Intermediate Similarity NPC470199
0.8457 Intermediate Similarity NPC199357
0.8457 Intermediate Similarity NPC470335
0.8457 Intermediate Similarity NPC470336
0.8457 Intermediate Similarity NPC85368
0.8452 Intermediate Similarity NPC148323
0.8452 Intermediate Similarity NPC283480
0.8441 Intermediate Similarity NPC314941
0.8436 Intermediate Similarity NPC292706
0.8436 Intermediate Similarity NPC224557
0.8436 Intermediate Similarity NPC148710
0.8427 Intermediate Similarity NPC470452
0.8427 Intermediate Similarity NPC85316
0.8427 Intermediate Similarity NPC470448
0.8427 Intermediate Similarity NPC208069
0.8427 Intermediate Similarity NPC197357
0.8427 Intermediate Similarity NPC164047
0.8427 Intermediate Similarity NPC470453
0.8424 Intermediate Similarity NPC44378
0.8424 Intermediate Similarity NPC280753
0.8421 Intermediate Similarity NPC101116
0.8421 Intermediate Similarity NPC278329
0.8421 Intermediate Similarity NPC146837
0.8421 Intermediate Similarity NPC212099
0.8415 Intermediate Similarity NPC314020
0.8409 Intermediate Similarity NPC294629
0.8409 Intermediate Similarity NPC470667
0.8409 Intermediate Similarity NPC63105
0.8409 Intermediate Similarity NPC186800
0.8409 Intermediate Similarity NPC68381
0.8405 Intermediate Similarity NPC474630
0.8404 Intermediate Similarity NPC315889
0.8402 Intermediate Similarity NPC29552
0.8402 Intermediate Similarity NPC472889
0.84 Intermediate Similarity NPC473113
0.8398 Intermediate Similarity NPC205721
0.8393 Intermediate Similarity NPC82190
0.8393 Intermediate Similarity NPC174599
0.8393 Intermediate Similarity NPC192219
0.8391 Intermediate Similarity NPC328321
0.8391 Intermediate Similarity NPC473096
0.8391 Intermediate Similarity NPC222455
0.8391 Intermediate Similarity NPC473095
0.8391 Intermediate Similarity NPC259905
0.8373 Intermediate Similarity NPC475407
0.8371 Intermediate Similarity NPC212290
0.837 Intermediate Similarity NPC314687
0.837 Intermediate Similarity NPC470198
0.837 Intermediate Similarity NPC470193
0.837 Intermediate Similarity NPC470200
0.837 Intermediate Similarity NPC470197
0.837 Intermediate Similarity NPC470194
0.837 Intermediate Similarity NPC470196
0.837 Intermediate Similarity NPC316274
0.837 Intermediate Similarity NPC470195
0.837 Intermediate Similarity NPC282474
0.8363 Intermediate Similarity NPC471493
0.8362 Intermediate Similarity NPC469345
0.8352 Intermediate Similarity NPC469393
0.8352 Intermediate Similarity NPC472054
0.8352 Intermediate Similarity NPC98776
0.8344 Intermediate Similarity NPC29932
0.8343 Intermediate Similarity NPC174486
0.8343 Intermediate Similarity NPC105591
0.8333 Intermediate Similarity NPC471695
0.8333 Intermediate Similarity NPC209393
0.8333 Intermediate Similarity NPC473094
0.8333 Intermediate Similarity NPC205172
0.8333 Intermediate Similarity NPC106700
0.8324 Intermediate Similarity NPC178281
0.8324 Intermediate Similarity NPC109403
0.8324 Intermediate Similarity NPC102465
0.8324 Intermediate Similarity NPC261012
0.8324 Intermediate Similarity NPC472049
0.8324 Intermediate Similarity NPC314738
0.8323 Intermediate Similarity NPC205918
0.8315 Intermediate Similarity NPC168584
0.8315 Intermediate Similarity NPC470334
0.8315 Intermediate Similarity NPC47191
0.8314 Intermediate Similarity NPC216752
0.8305 Intermediate Similarity NPC86809
0.8305 Intermediate Similarity NPC108202
0.8305 Intermediate Similarity NPC199533
0.8305 Intermediate Similarity NPC232412
0.8305 Intermediate Similarity NPC470454
0.8305 Intermediate Similarity NPC98667
0.8305 Intermediate Similarity NPC146803
0.8305 Intermediate Similarity NPC294149
0.8304 Intermediate Similarity NPC284495
0.8295 Intermediate Similarity NPC476159
0.8294 Intermediate Similarity NPC257309
0.8294 Intermediate Similarity NPC478226
0.8287 Intermediate Similarity NPC241847
0.8287 Intermediate Similarity NPC197972
0.8286 Intermediate Similarity NPC137460
0.8284 Intermediate Similarity NPC314257
0.8278 Intermediate Similarity NPC478001
0.8276 Intermediate Similarity NPC178851
0.8276 Intermediate Similarity NPC178173
0.8274 Intermediate Similarity NPC478220
0.827 Intermediate Similarity NPC42286
0.8268 Intermediate Similarity NPC470443
0.8268 Intermediate Similarity NPC473682
0.8268 Intermediate Similarity NPC110941
0.8268 Intermediate Similarity NPC473571
0.8268 Intermediate Similarity NPC241423
0.8268 Intermediate Similarity NPC470444
0.8268 Intermediate Similarity NPC126784
0.8266 Intermediate Similarity NPC183672
0.8266 Intermediate Similarity NPC257566
0.8266 Intermediate Similarity NPC66087
0.8266 Intermediate Similarity NPC17432
0.8266 Intermediate Similarity NPC179198
0.8266 Intermediate Similarity NPC124155
0.8266 Intermediate Similarity NPC278419
0.8263 Intermediate Similarity NPC477914
0.8258 Intermediate Similarity NPC292019
0.8258 Intermediate Similarity NPC48984
0.8258 Intermediate Similarity NPC470949

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC19056 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8971 High Similarity NPD7879 Clinical (unspecified phase)
0.8722 High Similarity NPD7699 Phase 2
0.8722 High Similarity NPD7700 Phase 2
0.8556 High Similarity NPD6535 Approved
0.8556 High Similarity NPD6534 Approved
0.8531 High Similarity NPD8150 Discontinued
0.8497 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8441 Intermediate Similarity NPD8319 Approved
0.8441 Intermediate Similarity NPD8320 Phase 1
0.8387 Intermediate Similarity NPD7697 Approved
0.8387 Intermediate Similarity NPD7698 Approved
0.8387 Intermediate Similarity NPD7435 Discontinued
0.8387 Intermediate Similarity NPD7696 Phase 3
0.8324 Intermediate Similarity NPD6781 Approved
0.8324 Intermediate Similarity NPD6782 Approved
0.8324 Intermediate Similarity NPD6776 Approved
0.8324 Intermediate Similarity NPD6780 Approved
0.8324 Intermediate Similarity NPD6778 Approved
0.8324 Intermediate Similarity NPD6777 Approved
0.8324 Intermediate Similarity NPD6779 Approved
0.8307 Intermediate Similarity NPD7701 Phase 2
0.8305 Intermediate Similarity NPD7808 Phase 3
0.8249 Intermediate Similarity NPD7251 Discontinued
0.8245 Intermediate Similarity NPD7870 Phase 2
0.8245 Intermediate Similarity NPD7871 Phase 2
0.822 Intermediate Similarity NPD7874 Approved
0.822 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.8192 Intermediate Similarity NPD6797 Phase 2
0.8156 Intermediate Similarity NPD8313 Approved
0.8156 Intermediate Similarity NPD8312 Approved
0.8083 Intermediate Similarity NPD7801 Approved
0.8079 Intermediate Similarity NPD7054 Approved
0.8034 Intermediate Similarity NPD7074 Phase 3
0.8034 Intermediate Similarity NPD7472 Approved
0.8033 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8023 Intermediate Similarity NPD3751 Discontinued
0.8 Intermediate Similarity NPD6213 Phase 3
0.8 Intermediate Similarity NPD6214 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD6212 Phase 3
0.8 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7977 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7917 Intermediate Similarity NPD7211 Clinical (unspecified phase)
0.7887 Intermediate Similarity NPD8151 Discontinued
0.7853 Intermediate Similarity NPD6823 Phase 2
0.7836 Intermediate Similarity NPD4380 Phase 2
0.7821 Intermediate Similarity NPD3818 Discontinued
0.7811 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.7771 Intermediate Similarity NPD7075 Discontinued
0.7747 Intermediate Similarity NPD6559 Discontinued
0.7709 Intermediate Similarity NPD6166 Phase 2
0.7709 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7709 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD3787 Discontinued
0.7676 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD7473 Discontinued
0.764 Intermediate Similarity NPD6959 Discontinued
0.7626 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7626 Intermediate Similarity NPD7783 Phase 2
0.76 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.76 Intermediate Similarity NPD7819 Suspended
0.7598 Intermediate Similarity NPD6232 Discontinued
0.7557 Intermediate Similarity NPD5402 Approved
0.7543 Intermediate Similarity NPD6801 Discontinued
0.754 Intermediate Similarity NPD8434 Phase 2
0.7527 Intermediate Similarity NPD7799 Discontinued
0.75 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7486 Intermediate Similarity NPD5844 Phase 1
0.7459 Intermediate Similarity NPD8368 Discontinued
0.7432 Intermediate Similarity NPD7228 Approved
0.7405 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD5494 Approved
0.7368 Intermediate Similarity NPD8058 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD8059 Phase 3
0.7368 Intermediate Similarity NPD6190 Approved
0.7366 Intermediate Similarity NPD7685 Pre-registration
0.736 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.736 Intermediate Similarity NPD3817 Phase 2
0.7345 Intermediate Similarity NPD1934 Approved
0.7341 Intermediate Similarity NPD2534 Approved
0.7341 Intermediate Similarity NPD2532 Approved
0.7341 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7341 Intermediate Similarity NPD2533 Approved
0.734 Intermediate Similarity NPD8407 Phase 2
0.7321 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7318 Intermediate Similarity NPD3882 Suspended
0.7303 Intermediate Similarity NPD2801 Approved
0.7297 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD7390 Discontinued
0.7273 Intermediate Similarity NPD3226 Approved
0.7257 Intermediate Similarity NPD5403 Approved
0.7241 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD7266 Discontinued
0.7232 Intermediate Similarity NPD6599 Discontinued
0.7225 Intermediate Similarity NPD3300 Phase 2
0.7222 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7207 Intermediate Similarity NPD8455 Phase 2
0.7188 Intermediate Similarity NPD8361 Approved
0.7188 Intermediate Similarity NPD8360 Approved
0.7188 Intermediate Similarity NPD8435 Approved
0.7175 Intermediate Similarity NPD7458 Discontinued
0.7143 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD5401 Approved
0.7135 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD2346 Discontinued
0.7121 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.711 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD1512 Approved
0.7095 Intermediate Similarity NPD7411 Suspended
0.709 Intermediate Similarity NPD7240 Approved
0.7086 Intermediate Similarity NPD6799 Approved
0.7083 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.7079 Intermediate Similarity NPD7584 Approved
0.7076 Intermediate Similarity NPD5408 Approved
0.7076 Intermediate Similarity NPD5405 Approved
0.7076 Intermediate Similarity NPD5406 Approved
0.7076 Intermediate Similarity NPD5404 Approved
0.7071 Intermediate Similarity NPD8285 Discontinued
0.7056 Intermediate Similarity NPD37 Approved
0.7049 Intermediate Similarity NPD6234 Discontinued
0.7033 Intermediate Similarity NPD4966 Approved
0.7033 Intermediate Similarity NPD4965 Approved
0.7033 Intermediate Similarity NPD4967 Phase 2
0.7018 Intermediate Similarity NPD1510 Phase 2
0.7018 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7017 Intermediate Similarity NPD1465 Phase 2
0.6994 Remote Similarity NPD1549 Phase 2
0.6994 Remote Similarity NPD970 Clinical (unspecified phase)
0.6989 Remote Similarity NPD1511 Approved
0.6981 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6977 Remote Similarity NPD2935 Discontinued
0.697 Remote Similarity NPD8090 Clinical (unspecified phase)
0.697 Remote Similarity NPD8485 Approved
0.697 Remote Similarity NPD1470 Approved
0.6963 Remote Similarity NPD36 Approved
0.6963 Remote Similarity NPD4955 Approved
0.6963 Remote Similarity NPD5026 Approved
0.6963 Remote Similarity NPD5034 Approved
0.6963 Remote Similarity NPD4954 Approved
0.6963 Remote Similarity NPD5028 Approved
0.6954 Remote Similarity NPD6674 Discontinued
0.694 Remote Similarity NPD7768 Phase 2
0.6936 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6936 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6935 Remote Similarity NPD5710 Approved
0.6935 Remote Similarity NPD5711 Approved
0.6932 Remote Similarity NPD7236 Approved
0.6927 Remote Similarity NPD7239 Suspended
0.6923 Remote Similarity NPD7930 Approved
0.6914 Remote Similarity NPD3750 Approved
0.6914 Remote Similarity NPD8166 Discontinued
0.6914 Remote Similarity NPD4628 Phase 3
0.6911 Remote Similarity NPD5030 Phase 2
0.6907 Remote Similarity NPD5037 Approved
0.6907 Remote Similarity NPD5038 Approved
0.6907 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6902 Remote Similarity NPD3749 Approved
0.6901 Remote Similarity NPD1607 Approved
0.6898 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6889 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6887 Remote Similarity NPD8366 Approved
0.6887 Remote Similarity NPD7907 Approved
0.6882 Remote Similarity NPD1247 Approved
0.6882 Remote Similarity NPD943 Approved
0.6879 Remote Similarity NPD2796 Approved
0.6865 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6856 Remote Similarity NPD5036 Approved
0.6842 Remote Similarity NPD230 Phase 1
0.6839 Remote Similarity NPD5035 Approved
0.6833 Remote Similarity NPD1653 Approved
0.6818 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6791 Remote Similarity NPD7199 Phase 2
0.6784 Remote Similarity NPD1240 Approved
0.6782 Remote Similarity NPD6099 Approved
0.6782 Remote Similarity NPD6100 Approved
0.6778 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6777 Remote Similarity NPD8404 Phase 2
0.6774 Remote Similarity NPD919 Approved
0.6765 Remote Similarity NPD7680 Approved
0.6761 Remote Similarity NPD2800 Approved
0.6759 Remote Similarity NPD8491 Approved
0.6733 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6727 Remote Similarity NPD1201 Approved
0.672 Remote Similarity NPD3926 Phase 2
0.6715 Remote Similarity NPD7585 Approved
0.6706 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6705 Remote Similarity NPD6651 Approved
0.67 Remote Similarity NPD7501 Clinical (unspecified phase)
0.6699 Remote Similarity NPD7999 Approved
0.6667 Remote Similarity NPD2313 Discontinued
0.6667 Remote Similarity NPD7583 Approved
0.6667 Remote Similarity NPD3764 Approved
0.6667 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6649 Remote Similarity NPD5027 Approved
0.6649 Remote Similarity NPD5029 Approved
0.6649 Remote Similarity NPD5031 Approved
0.6636 Remote Similarity NPD4665 Approved
0.6636 Remote Similarity NPD4111 Phase 1
0.6629 Remote Similarity NPD3748 Approved
0.6627 Remote Similarity NPD2798 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data