Structure

Physi-Chem Properties

Molecular Weight:  370.14
Volume:  377.752
LogP:  4.547
LogD:  3.189
LogS:  -3.702
# Rotatable Bonds:  4
TPSA:  96.22
# H-Bond Aceptor:  6
# H-Bond Donor:  3
# Rings:  3
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.703
Synthetic Accessibility Score:  3.234
Fsp3:  0.286
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.847
MDCK Permeability:  1.204346426675329e-05
Pgp-inhibitor:  0.214
Pgp-substrate:  0.145
Human Intestinal Absorption (HIA):  0.012
20% Bioavailability (F20%):  0.037
30% Bioavailability (F30%):  0.863

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.008
Plasma Protein Binding (PPB):  93.89219665527344%
Volume Distribution (VD):  0.771
Pgp-substrate:  6.708572864532471%

ADMET: Metabolism

CYP1A2-inhibitor:  0.406
CYP1A2-substrate:  0.913
CYP2C19-inhibitor:  0.881
CYP2C19-substrate:  0.097
CYP2C9-inhibitor:  0.883
CYP2C9-substrate:  0.914
CYP2D6-inhibitor:  0.83
CYP2D6-substrate:  0.59
CYP3A4-inhibitor:  0.44
CYP3A4-substrate:  0.197

ADMET: Excretion

Clearance (CL):  16.964
Half-life (T1/2):  0.494

ADMET: Toxicity

hERG Blockers:  0.022
Human Hepatotoxicity (H-HT):  0.777
Drug-inuced Liver Injury (DILI):  0.901
AMES Toxicity:  0.059
Rat Oral Acute Toxicity:  0.812
Maximum Recommended Daily Dose:  0.31
Skin Sensitization:  0.889
Carcinogencity:  0.272
Eye Corrosion:  0.003
Eye Irritation:  0.798
Respiratory Toxicity:  0.924

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  Natural Product: NPC35038

Natural Product ID:  NPC35038
Common Name*:   6-Prenyl-3'-O-Methyleriodyctiol
IUPAC Name:   (2S)-5,7-dihydroxy-2-(4-hydroxy-3-methoxyphenyl)-6-(3-methylbut-2-enyl)-2,3-dihydrochromen-4-one
Synonyms:  
Standard InCHIKey:  GWVGVAPNTKLROZ-KRWDZBQOSA-N
Standard InCHI:  InChI=1S/C21H22O6/c1-11(2)4-6-13-15(23)9-19-20(21(13)25)16(24)10-17(27-19)12-5-7-14(22)18(8-12)26-3/h4-5,7-9,17,22-23,25H,6,10H2,1-3H3/t17-/m0/s1
SMILES:  CC(=CCc1c(cc2c(C(=O)C[C@@H](c3ccc(c(c3)OC)O)O2)c1O)O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL3581358
PubChem CID:   38351420
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0000337] Flavans
          • [CHEMONTID:0003646] 6-prenylated flavans
            • [CHEMONTID:0003507] 6-prenylated flavanones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[10654410]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[10843587]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. PMID[11054840]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota twigs n.a. n.a. PMID[1453182]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota n.a. leaf n.a. PMID[15165152]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota leaves n.a. n.a. PMID[15165152]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[15568770]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. PMID[15911254]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16392664]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota roots Hualien Hsien, Taiwan 2003-JUL PMID[16933887]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16933887]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota fruits n.a. n.a. PMID[17625893]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[17951038]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[18175961]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota Fruits n.a. n.a. PMID[18293924]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[18348535]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. root n.a. PMID[18975262]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. PMID[19407970]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. n.a. n.a. PMID[20192247]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. fruit n.a. PMID[21319773]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. bark n.a. PMID[21553897]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota fruits n.a. n.a. PMID[22445674]
NPO17376 Bacillus amyloliquefaciens Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[23265519]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota fruits n.a. n.a. PMID[23623680]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24295087]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. PMID[24333010]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. PMID[24459770]
NPO17376 Bacillus amyloliquefaciens Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[24698790]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota fruits n.a. n.a. PMID[25735399]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[27575476]
NPO17376 Bacillus amyloliquefaciens Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[27934031]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota Fruits n.a. n.a. PMID[28322565]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota Fruits n.a. n.a. PMID[28968119]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[30298740]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[9868163]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. Database[Article]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20489 Epilobium hirsutum Species Onagraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[Title]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27367 Latrunculia magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18473 Plathymenia reticulata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20843 Monsonia senegalensis Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19511 Dolabella californica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22961 Cordia leucocephala Species Cordiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21631 Faramea salicifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19036 Esenbeckia leiocarpa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5903 Conus mus Species Conidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21038 Lemaireocereus longispinus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20624 Simarouba glauca Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28202 Helichrysum tenuifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20084 Atraphaxis spinosa Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18143 Dendronephthya griffini Species Nephtheidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19912 Vellozia nanuzae Species Velloziaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22937 Vernonia fagifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16569 Gymnocalycium schickendantzii Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19995 Baccharis neglecta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20421 Aplophyllum alberti-regelii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO19778 Streptomyces flaveus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO20489 Epilobium hirsutum Species Onagraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11523 Erysimum leptophyllum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17849 Centaurea maculosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28072 Theonella conica Species Theonellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4051 Tricholoma columbetta Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22079 Paulownia tomentosa Species Paulowniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21243 Siphonaria capensis Species Siphonariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17376 Bacillus amyloliquefaciens Species Bacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12313 Haplophyllum obtusifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13449 Syzygium polycephaloides Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21108 Eria anomala Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21562 Diospyros assimilis Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14241 Planchonia grandis Species Asterolecaniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16141 Piper regnellii Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18866 Pteridium esculentum Species Dennstaedtiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17560 Pancratium sickenbergeri Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9968 Shigella dysenteriae Species Enterobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16803 Libanothamnus occultus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19810 Myxococcus stipitatus Species Myxococcaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21495 Abelia chinensis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17258 Rhinella marina Species Bufonidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1970 Cell Line THP-1 Homo sapiens IC50 > 10000.0 nM PMID[486042]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC35038 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC195796
1.0 High Similarity NPC291878
1.0 High Similarity NPC278778
0.9933 High Similarity NPC472598
0.9933 High Similarity NPC291508
0.9933 High Similarity NPC474055
0.9933 High Similarity NPC27337
0.9932 High Similarity NPC45849
0.9932 High Similarity NPC200761
0.9932 High Similarity NPC470327
0.9932 High Similarity NPC477503
0.9866 High Similarity NPC472626
0.9866 High Similarity NPC209614
0.9866 High Similarity NPC470328
0.9865 High Similarity NPC213896
0.9865 High Similarity NPC192083
0.9865 High Similarity NPC18727
0.9801 High Similarity NPC118256
0.9801 High Similarity NPC192686
0.9801 High Similarity NPC36217
0.9801 High Similarity NPC472624
0.9801 High Similarity NPC119209
0.9801 High Similarity NPC282009
0.9801 High Similarity NPC287328
0.98 High Similarity NPC223787
0.9799 High Similarity NPC321779
0.9799 High Similarity NPC226025
0.9797 High Similarity NPC302950
0.9797 High Similarity NPC236637
0.9797 High Similarity NPC219582
0.9797 High Similarity NPC106976
0.9737 High Similarity NPC474038
0.9737 High Similarity NPC471499
0.9737 High Similarity NPC26326
0.9737 High Similarity NPC472634
0.9737 High Similarity NPC471210
0.9737 High Similarity NPC472632
0.9735 High Similarity NPC22192
0.9735 High Similarity NPC250214
0.9735 High Similarity NPC95936
0.9732 High Similarity NPC298692
0.9732 High Similarity NPC74924
0.9673 High Similarity NPC474033
0.9673 High Similarity NPC472635
0.9673 High Similarity NPC201800
0.9673 High Similarity NPC474034
0.9673 High Similarity NPC476247
0.9671 High Similarity NPC470326
0.9671 High Similarity NPC475784
0.9671 High Similarity NPC472630
0.9671 High Similarity NPC472631
0.9671 High Similarity NPC174953
0.9669 High Similarity NPC284820
0.9669 High Similarity NPC471479
0.9669 High Similarity NPC471515
0.9669 High Similarity NPC474208
0.9669 High Similarity NPC48208
0.9669 High Similarity NPC471209
0.9669 High Similarity NPC475267
0.9669 High Similarity NPC474836
0.9669 High Similarity NPC162869
0.9669 High Similarity NPC78225
0.9669 High Similarity NPC473272
0.9669 High Similarity NPC156057
0.9667 High Similarity NPC152951
0.9667 High Similarity NPC230149
0.9667 High Similarity NPC57674
0.9667 High Similarity NPC117992
0.9667 High Similarity NPC168247
0.9664 High Similarity NPC471982
0.9664 High Similarity NPC472912
0.9662 High Similarity NPC338131
0.961 High Similarity NPC186686
0.961 High Similarity NPC124038
0.961 High Similarity NPC472625
0.9608 High Similarity NPC266314
0.9608 High Similarity NPC142252
0.9608 High Similarity NPC471212
0.9608 High Similarity NPC134783
0.9608 High Similarity NPC471211
0.9605 High Similarity NPC210459
0.9605 High Similarity NPC473990
0.9605 High Similarity NPC117418
0.9605 High Similarity NPC53545
0.9603 High Similarity NPC191146
0.9603 High Similarity NPC320825
0.9603 High Similarity NPC255106
0.9603 High Similarity NPC471500
0.9603 High Similarity NPC13858
0.9603 High Similarity NPC68093
0.9603 High Similarity NPC235165
0.9603 High Similarity NPC326037
0.96 High Similarity NPC33051
0.96 High Similarity NPC273462
0.96 High Similarity NPC49402
0.96 High Similarity NPC227337
0.96 High Similarity NPC70433
0.9548 High Similarity NPC293319
0.9548 High Similarity NPC472277
0.9548 High Similarity NPC108433
0.9548 High Similarity NPC300053
0.9548 High Similarity NPC62261
0.9545 High Similarity NPC474150
0.9545 High Similarity NPC474162
0.9542 High Similarity NPC321399
0.9542 High Similarity NPC328102
0.9542 High Similarity NPC299436
0.9539 High Similarity NPC222814
0.9539 High Similarity NPC36852
0.9539 High Similarity NPC96167
0.9539 High Similarity NPC99597
0.9539 High Similarity NPC67876
0.9539 High Similarity NPC129684
0.9539 High Similarity NPC262286
0.9539 High Similarity NPC472913
0.9539 High Similarity NPC245758
0.9539 High Similarity NPC472914
0.9539 High Similarity NPC299520
0.9539 High Similarity NPC210084
0.9539 High Similarity NPC52530
0.9539 High Similarity NPC472910
0.9539 High Similarity NPC52889
0.9539 High Similarity NPC472911
0.9536 High Similarity NPC256925
0.9536 High Similarity NPC67396
0.9536 High Similarity NPC234255
0.9536 High Similarity NPC37392
0.9533 High Similarity NPC477231
0.9533 High Similarity NPC257648
0.9533 High Similarity NPC260979
0.953 High Similarity NPC3825
0.953 High Similarity NPC88804
0.9527 High Similarity NPC476342
0.9527 High Similarity NPC294852
0.9527 High Similarity NPC188679
0.9527 High Similarity NPC321011
0.9487 High Similarity NPC43319
0.9487 High Similarity NPC471213
0.9484 High Similarity NPC205265
0.9484 High Similarity NPC472281
0.9484 High Similarity NPC18100
0.9481 High Similarity NPC289771
0.9481 High Similarity NPC158188
0.9477 High Similarity NPC204879
0.9477 High Similarity NPC85121
0.9477 High Similarity NPC184755
0.9477 High Similarity NPC74178
0.9474 High Similarity NPC471985
0.9474 High Similarity NPC138243
0.9474 High Similarity NPC472916
0.9474 High Similarity NPC472455
0.9474 High Similarity NPC24640
0.9474 High Similarity NPC250922
0.947 High Similarity NPC469550
0.9467 High Similarity NPC256406
0.9467 High Similarity NPC31363
0.9463 High Similarity NPC183950
0.9463 High Similarity NPC48479
0.9463 High Similarity NPC52005
0.9463 High Similarity NPC183959
0.9463 High Similarity NPC223579
0.9463 High Similarity NPC177298
0.9463 High Similarity NPC137062
0.9463 High Similarity NPC1612
0.9463 High Similarity NPC287101
0.9427 High Similarity NPC218226
0.9423 High Similarity NPC326520
0.9423 High Similarity NPC475888
0.9419 High Similarity NPC83922
0.9419 High Similarity NPC472448
0.9419 High Similarity NPC472964
0.9419 High Similarity NPC211107
0.9419 High Similarity NPC81679
0.9416 High Similarity NPC476283
0.9416 High Similarity NPC228785
0.9416 High Similarity NPC263449
0.9416 High Similarity NPC14353
0.9416 High Similarity NPC292415
0.9416 High Similarity NPC472902
0.9416 High Similarity NPC470183
0.9416 High Similarity NPC56085
0.9416 High Similarity NPC476980
0.9416 High Similarity NPC204290
0.9412 High Similarity NPC136674
0.9412 High Similarity NPC469584
0.9412 High Similarity NPC219867
0.9412 High Similarity NPC187745
0.9412 High Similarity NPC161960
0.9412 High Similarity NPC108456
0.9412 High Similarity NPC304008
0.9412 High Similarity NPC218313
0.9412 High Similarity NPC474681
0.9412 High Similarity NPC470402
0.9412 High Similarity NPC180011
0.9408 High Similarity NPC472280
0.9408 High Similarity NPC255807
0.9408 High Similarity NPC213622
0.9408 High Similarity NPC133392
0.9408 High Similarity NPC31018
0.9408 High Similarity NPC113906

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC35038 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9865 High Similarity NPD2393 Clinical (unspecified phase)
0.9797 High Similarity NPD1934 Approved
0.9342 High Similarity NPD2801 Approved
0.9299 High Similarity NPD6168 Clinical (unspecified phase)
0.9299 High Similarity NPD6167 Clinical (unspecified phase)
0.9299 High Similarity NPD6166 Phase 2
0.9128 High Similarity NPD1511 Approved
0.9097 High Similarity NPD3882 Suspended
0.9068 High Similarity NPD7074 Phase 3
0.902 High Similarity NPD4380 Phase 2
0.9007 High Similarity NPD1512 Approved
0.9006 High Similarity NPD7054 Approved
0.8951 High Similarity NPD7472 Approved
0.8944 High Similarity NPD3818 Discontinued
0.894 High Similarity NPD4378 Clinical (unspecified phase)
0.8924 High Similarity NPD5494 Approved
0.8917 High Similarity NPD7075 Discontinued
0.891 High Similarity NPD3817 Phase 2
0.8854 High Similarity NPD4868 Clinical (unspecified phase)
0.8851 High Similarity NPD1552 Clinical (unspecified phase)
0.8851 High Similarity NPD1550 Clinical (unspecified phase)
0.8846 High Similarity NPD7096 Clinical (unspecified phase)
0.8792 High Similarity NPD1549 Phase 2
0.878 High Similarity NPD6797 Phase 2
0.8727 High Similarity NPD7251 Discontinued
0.8679 High Similarity NPD4381 Clinical (unspecified phase)
0.8675 High Similarity NPD4338 Clinical (unspecified phase)
0.8675 High Similarity NPD7808 Phase 3
0.8671 High Similarity NPD8443 Clinical (unspecified phase)
0.8608 High Similarity NPD7819 Suspended
0.858 High Similarity NPD6232 Discontinued
0.8545 High Similarity NPD5844 Phase 1
0.8545 High Similarity NPD7804 Clinical (unspecified phase)
0.8544 High Similarity NPD6801 Discontinued
0.8537 High Similarity NPD7473 Discontinued
0.8533 High Similarity NPD2796 Approved
0.8519 High Similarity NPD6959 Discontinued
0.8481 Intermediate Similarity NPD7411 Suspended
0.8467 Intermediate Similarity NPD1510 Phase 2
0.8452 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8393 Intermediate Similarity NPD6559 Discontinued
0.8387 Intermediate Similarity NPD6799 Approved
0.8333 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8322 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.8322 Intermediate Similarity NPD1240 Approved
0.8322 Intermediate Similarity NPD1613 Approved
0.8261 Intermediate Similarity NPD1465 Phase 2
0.8212 Intermediate Similarity NPD1607 Approved
0.82 Intermediate Similarity NPD943 Approved
0.8187 Intermediate Similarity NPD6599 Discontinued
0.8182 Intermediate Similarity NPD1247 Approved
0.8176 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.8171 Intermediate Similarity NPD919 Approved
0.8144 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD3027 Phase 3
0.8108 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.8098 Intermediate Similarity NPD5402 Approved
0.8052 Intermediate Similarity NPD2935 Discontinued
0.8049 Intermediate Similarity NPD7768 Phase 2
0.8013 Intermediate Similarity NPD2800 Approved
0.8013 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD5403 Approved
0.7987 Intermediate Similarity NPD2533 Approved
0.7987 Intermediate Similarity NPD2534 Approved
0.7987 Intermediate Similarity NPD2532 Approved
0.7976 Intermediate Similarity NPD3926 Phase 2
0.7949 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7908 Intermediate Similarity NPD230 Phase 1
0.7888 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7875 Intermediate Similarity NPD5401 Approved
0.7857 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7853 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7848 Intermediate Similarity NPD3750 Approved
0.7848 Intermediate Similarity NPD4628 Phase 3
0.7844 Intermediate Similarity NPD6234 Discontinued
0.7829 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7821 Intermediate Similarity NPD1551 Phase 2
0.7792 Intermediate Similarity NPD447 Suspended
0.7784 Intermediate Similarity NPD3749 Approved
0.7778 Intermediate Similarity NPD920 Approved
0.7751 Intermediate Similarity NPD7199 Phase 2
0.7742 Intermediate Similarity NPD6651 Approved
0.773 Intermediate Similarity NPD1653 Approved
0.7714 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7712 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7707 Intermediate Similarity NPD6100 Approved
0.7707 Intermediate Similarity NPD6099 Approved
0.7702 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7701 Intermediate Similarity NPD5953 Discontinued
0.7688 Intermediate Similarity NPD7286 Phase 2
0.7684 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD3226 Approved
0.7677 Intermediate Similarity NPD1933 Approved
0.7673 Intermediate Similarity NPD1243 Approved
0.7667 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7661 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7658 Intermediate Similarity NPD2346 Discontinued
0.7654 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7651 Intermediate Similarity NPD37 Approved
0.7643 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7643 Intermediate Similarity NPD2799 Discontinued
0.7643 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.764 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7632 Intermediate Similarity NPD9494 Approved
0.763 Intermediate Similarity NPD7228 Approved
0.763 Intermediate Similarity NPD3751 Discontinued
0.7619 Intermediate Similarity NPD4967 Phase 2
0.7619 Intermediate Similarity NPD4965 Approved
0.7619 Intermediate Similarity NPD4966 Approved
0.7602 Intermediate Similarity NPD3787 Discontinued
0.76 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7597 Intermediate Similarity NPD2313 Discontinued
0.7593 Intermediate Similarity NPD7390 Discontinued
0.7584 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD4360 Phase 2
0.7582 Intermediate Similarity NPD4908 Phase 1
0.7582 Intermediate Similarity NPD4363 Phase 3
0.7578 Intermediate Similarity NPD6190 Approved
0.7571 Intermediate Similarity NPD8312 Approved
0.7571 Intermediate Similarity NPD8313 Approved
0.7547 Intermediate Similarity NPD2344 Approved
0.7532 Intermediate Similarity NPD3748 Approved
0.7516 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD5711 Approved
0.75 Intermediate Similarity NPD5710 Approved
0.7485 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7467 Intermediate Similarity NPD1610 Phase 2
0.7458 Intermediate Similarity NPD7685 Pre-registration
0.7439 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7439 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7421 Intermediate Similarity NPD7584 Approved
0.7421 Intermediate Similarity NPD7033 Discontinued
0.7419 Intermediate Similarity NPD4625 Phase 3
0.7391 Intermediate Similarity NPD2424 Discontinued
0.7386 Intermediate Similarity NPD1203 Approved
0.738 Intermediate Similarity NPD6776 Approved
0.738 Intermediate Similarity NPD6779 Approved
0.738 Intermediate Similarity NPD6780 Approved
0.738 Intermediate Similarity NPD6781 Approved
0.738 Intermediate Similarity NPD6778 Approved
0.738 Intermediate Similarity NPD6782 Approved
0.738 Intermediate Similarity NPD6777 Approved
0.7372 Intermediate Similarity NPD6798 Discontinued
0.7365 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7362 Intermediate Similarity NPD2309 Approved
0.7356 Intermediate Similarity NPD5242 Approved
0.7355 Intermediate Similarity NPD6832 Phase 2
0.7353 Intermediate Similarity NPD5353 Approved
0.7348 Intermediate Similarity NPD8434 Phase 2
0.7348 Intermediate Similarity NPD8150 Discontinued
0.7344 Intermediate Similarity NPD8151 Discontinued
0.7342 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7342 Intermediate Similarity NPD5124 Phase 1
0.7342 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD1548 Phase 1
0.7299 Intermediate Similarity NPD7229 Phase 3
0.7294 Intermediate Similarity NPD8455 Phase 2
0.729 Intermediate Similarity NPD2861 Phase 2
0.7278 Intermediate Similarity NPD4060 Phase 1
0.7263 Intermediate Similarity NPD7435 Discontinued
0.7262 Intermediate Similarity NPD7458 Discontinued
0.7261 Intermediate Similarity NPD3268 Approved
0.7258 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7258 Intermediate Similarity NPD4361 Phase 2
0.7239 Intermediate Similarity NPD1652 Phase 2
0.7239 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD6844 Discontinued
0.7233 Intermediate Similarity NPD6355 Discontinued
0.7226 Intermediate Similarity NPD2798 Approved
0.7222 Intermediate Similarity NPD7266 Discontinued
0.7215 Intermediate Similarity NPD6233 Phase 2
0.7207 Intermediate Similarity NPD3823 Discontinued
0.719 Intermediate Similarity NPD9717 Approved
0.719 Intermediate Similarity NPD9269 Phase 2
0.719 Intermediate Similarity NPD1608 Approved
0.7179 Intermediate Similarity NPD7783 Phase 2
0.7179 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD3018 Phase 2
0.7176 Intermediate Similarity NPD6386 Approved
0.7176 Intermediate Similarity NPD6385 Approved
0.7173 Intermediate Similarity NPD7697 Approved
0.7173 Intermediate Similarity NPD7696 Phase 3
0.7173 Intermediate Similarity NPD7698 Approved
0.7167 Intermediate Similarity NPD7240 Approved
0.7161 Intermediate Similarity NPD2797 Approved
0.7152 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD1729 Discontinued
0.7143 Intermediate Similarity NPD8127 Discontinued
0.7143 Intermediate Similarity NPD4749 Approved
0.7135 Intermediate Similarity NPD7870 Phase 2
0.7135 Intermediate Similarity NPD7871 Phase 2
0.7134 Intermediate Similarity NPD6674 Discontinued
0.7134 Intermediate Similarity NPD2654 Approved
0.7133 Intermediate Similarity NPD5536 Phase 2
0.7126 Intermediate Similarity NPD4662 Approved
0.7126 Intermediate Similarity NPD4661 Approved
0.7124 Intermediate Similarity NPD422 Phase 1
0.7124 Intermediate Similarity NPD1201 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data