Structure

Physi-Chem Properties

Molecular Weight:  332.05
Volume:  308.853
LogP:  1.957
LogD:  1.249
LogS:  -3.541
# Rotatable Bonds:  2
TPSA:  140.59
# H-Bond Aceptor:  8
# H-Bond Donor:  5
# Rings:  3
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.449
Synthetic Accessibility Score:  2.632
Fsp3:  0.062
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.236
MDCK Permeability:  8.455388524453156e-06
Pgp-inhibitor:  0.065
Pgp-substrate:  0.004
Human Intestinal Absorption (HIA):  0.052
20% Bioavailability (F20%):  0.063
30% Bioavailability (F30%):  0.963

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.003
Plasma Protein Binding (PPB):  94.14209747314453%
Volume Distribution (VD):  0.606
Pgp-substrate:  13.812210083007812%

ADMET: Metabolism

CYP1A2-inhibitor:  0.873
CYP1A2-substrate:  0.486
CYP2C19-inhibitor:  0.028
CYP2C19-substrate:  0.048
CYP2C9-inhibitor:  0.575
CYP2C9-substrate:  0.365
CYP2D6-inhibitor:  0.09
CYP2D6-substrate:  0.185
CYP3A4-inhibitor:  0.116
CYP3A4-substrate:  0.046

ADMET: Excretion

Clearance (CL):  7.841
Half-life (T1/2):  0.933

ADMET: Toxicity

hERG Blockers:  0.049
Human Hepatotoxicity (H-HT):  0.053
Drug-inuced Liver Injury (DILI):  0.982
AMES Toxicity:  0.684
Rat Oral Acute Toxicity:  0.072
Maximum Recommended Daily Dose:  0.156
Skin Sensitization:  0.93
Carcinogencity:  0.056
Eye Corrosion:  0.004
Eye Irritation:  0.931
Respiratory Toxicity:  0.071

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC214138

Natural Product ID:  NPC214138
Common Name*:   2-(3,4-Dihydroxyphenyl)-5,6,7-Trihydroxy-3-Methoxychromen-4-One
IUPAC Name:   2-(3,4-dihydroxyphenyl)-5,6,7-trihydroxy-3-methoxychromen-4-one
Synonyms:  
Standard InCHIKey:  QZAXKZRZMAXPSF-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C16H12O8/c1-23-16-14(22)11-10(5-9(19)12(20)13(11)21)24-15(16)6-2-3-7(17)8(18)4-6/h2-5,17-21H,1H3
SMILES:  COc1c(oc2c(c1=O)c(O)c(c(c2)O)O)c1ccc(c(c1)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL478439
PubChem CID:   5320475
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0002585] O-methylated flavonoids
          • [CHEMONTID:0002588] 3-O-methylated flavonoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. stem n.a. DOI[10.1007/s11418-006-0112-9]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. flower n.a. DOI[10.1007/s11418-006-0112-9]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. leaf n.a. DOI[10.1007/s11418-006-0112-9]
NPO24630 Sophora exigua Species Fabaceae Eukaryota n.a. root n.a. DOI[10.1016/0031-9422(92)80056-K]
NPO11199 Agelas nakamurai Species Agelasidae Eukaryota n.a. at a depth of 14 m near the island of Ambon (Seram Seilale), Indonesia 1997-AUG PMID[10514317]
NPO24630 Sophora exigua Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[10839220]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[12357398]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[12483566]
NPO11199 Agelas nakamurai Species Agelasidae Eukaryota n.a. n.a. n.a. PMID[14677933]
NPO25324 Phorbas amaranthus Species Hymedesmiidae Eukaryota n.a. n.a. n.a. PMID[15104518]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[15497948]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[15921417]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[16209910]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[16499339]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[16872138]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[16904330]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[17125234]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[17827664]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[19246197]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota Ginkgo biloba n.a. n.a. PMID[19246197]
NPO23546 Clausena lansium Species Rutaceae Eukaryota leaves n.a. n.a. PMID[19327990]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[19427327]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19829679]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[20225834]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[20814854]
NPO25772 Lippia mexicana Species Verbenaceae Eukaryota n.a. leaf n.a. PMID[20942442]
NPO25772 Lippia mexicana Species Verbenaceae Eukaryota n.a. flower n.a. PMID[20942442]
NPO25772 Lippia mexicana Species Verbenaceae Eukaryota n.a. stem n.a. PMID[20942442]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. root n.a. PMID[21087019]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota isolated from the leaves of Viguiera robusta n.a. n.a. PMID[21548578]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[21548578]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. mycelium n.a. PMID[21548578]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[21640594]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[21854043]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[22112725]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[22314230]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Stems n.a. n.a. PMID[22372931]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[22593034]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[23072467]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23521110]
NPO26819 Xanthium pungens Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[2380717]
NPO26819 Xanthium pungens Species Asteraceae Eukaryota burrs n.a. n.a. PMID[2380717]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Roots n.a. n.a. PMID[24798144]
NPO24324 Halobacterium salinarum Species Halobacteriaceae Archaea n.a. n.a. n.a. PMID[24823651]
NPO11199 Agelas nakamurai Species Agelasidae Eukaryota n.a. Okinawan n.a. PMID[26083682]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. Xichang of Sichuan Province, China n.a. PMID[26125976]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[26343828]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Leaves n.a. n.a. PMID[26523463]
NPO25474 Ocotea pulchella Species Lauraceae Eukaryota n.a. stem n.a. PMID[27482860]
NPO25474 Ocotea pulchella Species Lauraceae Eukaryota n.a. root n.a. PMID[27482860]
NPO25474 Ocotea pulchella Species Lauraceae Eukaryota n.a. leaf n.a. PMID[27482860]
NPO8912 Daphne giraldii Species Thymelaeaceae Eukaryota n.a. n.a. n.a. PMID[27627130]
NPO8912 Daphne giraldii Species Thymelaeaceae Eukaryota n.a. n.a. n.a. PMID[28371676]
NPO24447 Thalictrum cultratum Species Ranunculaceae Eukaryota Roots n.a. n.a. PMID[29131616]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. n.a. PMID[33118348]
NPO28927 Gutierrezia microcephala Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[3655803]
NPO26889 Chaetomium subaffine Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[436014]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[5066072]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. PMID[6387056]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[7116505]
NPO11199 Agelas nakamurai Species Agelasidae Eukaryota n.a. papua new guinean n.a. PMID[9784179]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[9834167]
NPO26889 Chaetomium subaffine Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[CiteXplore Id]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[CiteXplore Id]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25520 Uncaria laevigata Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26744 Heliotropium eichwaldii Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26916 Thermopsis alpina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21594 Sporobolus cynosuroides Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24447 Thalictrum cultratum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26677 Garcinia pseudoguttifera Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28927 Gutierrezia microcephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25520 Uncaria laevigata Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26744 Heliotropium eichwaldii Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26916 Thermopsis alpina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26457 Alpinia allughas Species Staphylinidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26001 Carlina acaulis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26916 Thermopsis alpina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28927 Gutierrezia microcephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26457 Alpinia allughas Species Staphylinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25093 Ericameria diffusa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26312 Cirsium tanakae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25402 Kuehneromyces mutabilis Species Strophariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26083 Eumorphia sericea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24653 Calonectria cylindrospora Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10241 Afrocarpus falcatus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21702 Decachaeta thieleana n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO26483 Chrysosplenium echinus Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26744 Heliotropium eichwaldii Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20052 Flemingia chappar Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24510 Turricula parryi Species Namaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26975 Aloe vulgaris Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18359 Canella winterana Species Canellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25324 Phorbas amaranthus Species Hymedesmiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28927 Gutierrezia microcephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24171 Chaetomium globosum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24834 Cystoseira jabukae Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26853 Baccharis magellanica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8912 Daphne giraldii Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23684 Narcissus obesus Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26210 Eupatorium birmanicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26645 Beilschmiedia volckii Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24324 Halobacterium salinarum Species Halobacteriaceae Archaea n.a. n.a. n.a. Database[UNPD]
NPO21594 Sporobolus cynosuroides Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26677 Garcinia pseudoguttifera Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25583 Beta vulgaris Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22785 Nicotiana debneyi Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25520 Uncaria laevigata Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26115 Asterogyne martiana Species Arecaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24736 Acacia pycnantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26889 Chaetomium subaffine Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26525 Eriostemon thryptomenoides Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25910 Trichoderma polysporum Species Hypocreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25474 Ocotea pulchella Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26001 Carlina acaulis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26786 Berkheya zeyheri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26945 Crangon vulgaris Species Crangonidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26848 Ligularia lamarum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25643 Streptomyces chattanoogensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO26709 Phyllanthus discoideus Species Leiothrichidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25772 Lippia mexicana Species Verbenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11199 Agelas nakamurai Species Agelasidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24447 Thalictrum cultratum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26916 Thermopsis alpina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24630 Sophora exigua Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26819 Xanthium pungens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT68 Individual Protein Aldose reductase Rattus norvegicus IC50 = 57.54 nM PMID[574190]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC214138 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9866 High Similarity NPC163524
0.9866 High Similarity NPC287979
0.9866 High Similarity NPC305663
0.9866 High Similarity NPC176665
0.98 High Similarity NPC261004
0.98 High Similarity NPC22472
0.98 High Similarity NPC176300
0.98 High Similarity NPC105242
0.98 High Similarity NPC288669
0.98 High Similarity NPC7846
0.98 High Similarity NPC18607
0.98 High Similarity NPC25495
0.98 High Similarity NPC19687
0.98 High Similarity NPC9609
0.98 High Similarity NPC115798
0.98 High Similarity NPC18772
0.98 High Similarity NPC143828
0.98 High Similarity NPC191459
0.98 High Similarity NPC4481
0.98 High Similarity NPC152166
0.98 High Similarity NPC204854
0.98 High Similarity NPC130894
0.98 High Similarity NPC253634
0.98 High Similarity NPC300943
0.9799 High Similarity NPC266960
0.9799 High Similarity NPC43243
0.9799 High Similarity NPC98661
0.9799 High Similarity NPC247017
0.9799 High Similarity NPC245546
0.9733 High Similarity NPC472438
0.9733 High Similarity NPC235215
0.9733 High Similarity NPC78302
0.9733 High Similarity NPC75215
0.9733 High Similarity NPC203891
0.9733 High Similarity NPC227192
0.9733 High Similarity NPC189179
0.9733 High Similarity NPC7973
0.9733 High Similarity NPC29841
0.9733 High Similarity NPC224137
0.9733 High Similarity NPC101830
0.9733 High Similarity NPC93376
0.9733 High Similarity NPC110070
0.9732 High Similarity NPC201451
0.9732 High Similarity NPC26227
0.9732 High Similarity NPC44079
0.9728 High Similarity NPC77858
0.9728 High Similarity NPC188871
0.9728 High Similarity NPC286342
0.9728 High Similarity NPC149127
0.9728 High Similarity NPC184136
0.9669 High Similarity NPC193842
0.9667 High Similarity NPC55619
0.9667 High Similarity NPC178854
0.9667 High Similarity NPC100916
0.9667 High Similarity NPC49824
0.9667 High Similarity NPC200388
0.9667 High Similarity NPC474520
0.9667 High Similarity NPC268161
0.9667 High Similarity NPC292107
0.9662 High Similarity NPC260895
0.966 High Similarity NPC87125
0.966 High Similarity NPC270465
0.966 High Similarity NPC195351
0.96 High Similarity NPC196439
0.96 High Similarity NPC138360
0.96 High Similarity NPC50715
0.96 High Similarity NPC189960
0.96 High Similarity NPC92659
0.96 High Similarity NPC4455
0.96 High Similarity NPC2476
0.96 High Similarity NPC280339
0.96 High Similarity NPC167815
0.96 High Similarity NPC201136
0.96 High Similarity NPC163780
0.96 High Similarity NPC128863
0.96 High Similarity NPC183597
0.96 High Similarity NPC32557
0.96 High Similarity NPC227325
0.96 High Similarity NPC146165
0.9597 High Similarity NPC198826
0.9597 High Similarity NPC301323
0.9597 High Similarity NPC100887
0.9597 High Similarity NPC57030
0.9597 High Similarity NPC212678
0.9597 High Similarity NPC188203
0.9597 High Similarity NPC239128
0.9597 High Similarity NPC131624
0.9597 High Similarity NPC293183
0.9597 High Similarity NPC25270
0.9597 High Similarity NPC279989
0.9597 High Similarity NPC187498
0.9597 High Similarity NPC27208
0.9597 High Similarity NPC256283
0.9597 High Similarity NPC83508
0.9597 High Similarity NPC162313
0.9597 High Similarity NPC241498
0.9597 High Similarity NPC222830
0.9597 High Similarity NPC123886
0.9597 High Similarity NPC71334
0.9597 High Similarity NPC156222
0.9597 High Similarity NPC301123
0.9597 High Similarity NPC275836
0.9597 High Similarity NPC142540
0.9597 High Similarity NPC275722
0.9597 High Similarity NPC82325
0.9597 High Similarity NPC120163
0.9536 High Similarity NPC265511
0.9533 High Similarity NPC86485
0.9533 High Similarity NPC246204
0.9533 High Similarity NPC274327
0.9533 High Similarity NPC255350
0.9533 High Similarity NPC236223
0.9533 High Similarity NPC47781
0.9533 High Similarity NPC250822
0.9533 High Similarity NPC58382
0.9533 High Similarity NPC176775
0.9533 High Similarity NPC270620
0.9533 High Similarity NPC78326
0.9533 High Similarity NPC162351
0.9533 High Similarity NPC179126
0.9533 High Similarity NPC183878
0.9533 High Similarity NPC145379
0.9533 High Similarity NPC276409
0.9533 High Similarity NPC69394
0.9533 High Similarity NPC22519
0.9533 High Similarity NPC231018
0.9533 High Similarity NPC75279
0.9533 High Similarity NPC160951
0.953 High Similarity NPC252933
0.953 High Similarity NPC125062
0.953 High Similarity NPC133953
0.953 High Similarity NPC50403
0.953 High Similarity NPC200740
0.953 High Similarity NPC54394
0.953 High Similarity NPC225731
0.953 High Similarity NPC28274
0.9524 High Similarity NPC108406
0.9524 High Similarity NPC275772
0.9524 High Similarity NPC239312
0.9524 High Similarity NPC130230
0.9477 High Similarity NPC246478
0.947 High Similarity NPC80534
0.947 High Similarity NPC20830
0.947 High Similarity NPC56786
0.947 High Similarity NPC208197
0.947 High Similarity NPC133392
0.947 High Similarity NPC256612
0.947 High Similarity NPC213622
0.9467 High Similarity NPC134677
0.9467 High Similarity NPC55205
0.9463 High Similarity NPC306821
0.9463 High Similarity NPC62042
0.9459 High Similarity NPC12367
0.9459 High Similarity NPC118726
0.9456 High Similarity NPC169749
0.9456 High Similarity NPC20791
0.9456 High Similarity NPC179271
0.9419 High Similarity NPC470459
0.9412 High Similarity NPC195832
0.94 High Similarity NPC76376
0.94 High Similarity NPC208043
0.94 High Similarity NPC236769
0.94 High Similarity NPC226973
0.9396 High Similarity NPC159103
0.9396 High Similarity NPC137062
0.9396 High Similarity NPC183950
0.9396 High Similarity NPC296197
0.9396 High Similarity NPC216318
0.9396 High Similarity NPC52005
0.9396 High Similarity NPC287101
0.9396 High Similarity NPC259713
0.9396 High Similarity NPC223579
0.9396 High Similarity NPC17286
0.9392 High Similarity NPC51443
0.9392 High Similarity NPC74881
0.9363 High Similarity NPC76482
0.9359 High Similarity NPC470457
0.9351 High Similarity NPC263449
0.9346 High Similarity NPC470402
0.9346 High Similarity NPC174908
0.9342 High Similarity NPC2928
0.9338 High Similarity NPC199100
0.9338 High Similarity NPC60972
0.9338 High Similarity NPC63187
0.9338 High Similarity NPC180234
0.9338 High Similarity NPC120537
0.9338 High Similarity NPC39732
0.9338 High Similarity NPC37684
0.9338 High Similarity NPC157784
0.9333 High Similarity NPC201547
0.9333 High Similarity NPC219330
0.9333 High Similarity NPC50728
0.9333 High Similarity NPC10467
0.9333 High Similarity NPC45873
0.9333 High Similarity NPC259058
0.9333 High Similarity NPC166753
0.9329 High Similarity NPC276930
0.9329 High Similarity NPC120464
0.9329 High Similarity NPC119059
0.932 High Similarity NPC279121

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC214138 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9533 High Similarity NPD2801 Approved
0.9456 High Similarity NPD1512 Approved
0.932 High Similarity NPD1511 Approved
0.9156 High Similarity NPD3882 Suspended
0.9091 High Similarity NPD3817 Phase 2
0.9085 High Similarity NPD1934 Approved
0.9026 High Similarity NPD2393 Clinical (unspecified phase)
0.8957 High Similarity NPD4338 Clinical (unspecified phase)
0.8875 High Similarity NPD6166 Phase 2
0.8875 High Similarity NPD6168 Clinical (unspecified phase)
0.8875 High Similarity NPD6167 Clinical (unspecified phase)
0.8874 High Similarity NPD4378 Clinical (unspecified phase)
0.8834 High Similarity NPD6797 Phase 2
0.878 High Similarity NPD7251 Discontinued
0.865 High Similarity NPD3818 Discontinued
0.8614 High Similarity NPD7808 Phase 3
0.8608 High Similarity NPD5402 Approved
0.8598 High Similarity NPD7054 Approved
0.8545 High Similarity NPD7472 Approved
0.85 High Similarity NPD7075 Discontinued
0.8442 Intermediate Similarity NPD6799 Approved
0.8438 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8434 Intermediate Similarity NPD7074 Phase 3
0.8411 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8411 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.84 Intermediate Similarity NPD1510 Phase 2
0.8365 Intermediate Similarity NPD6801 Discontinued
0.8355 Intermediate Similarity NPD1549 Phase 2
0.8354 Intermediate Similarity NPD4380 Phase 2
0.8344 Intermediate Similarity NPD1247 Approved
0.8313 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8282 Intermediate Similarity NPD5494 Approved
0.8272 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.8269 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8263 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8255 Intermediate Similarity NPD943 Approved
0.8255 Intermediate Similarity NPD1240 Approved
0.8224 Intermediate Similarity NPD2796 Approved
0.8182 Intermediate Similarity NPD6232 Discontinued
0.8166 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8165 Intermediate Similarity NPD5403 Approved
0.8153 Intermediate Similarity NPD5401 Approved
0.8146 Intermediate Similarity NPD1607 Approved
0.8144 Intermediate Similarity NPD7473 Discontinued
0.8125 Intermediate Similarity NPD6599 Discontinued
0.8117 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8086 Intermediate Similarity NPD1465 Phase 2
0.8086 Intermediate Similarity NPD7819 Suspended
0.8039 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.8037 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8024 Intermediate Similarity NPD3926 Phase 2
0.8 Intermediate Similarity NPD919 Approved
0.7963 Intermediate Similarity NPD7411 Suspended
0.7961 Intermediate Similarity NPD230 Phase 1
0.7904 Intermediate Similarity NPD6959 Discontinued
0.7898 Intermediate Similarity NPD3750 Approved
0.7871 Intermediate Similarity NPD2935 Discontinued
0.7867 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7848 Intermediate Similarity NPD6190 Approved
0.7836 Intermediate Similarity NPD5844 Phase 1
0.7834 Intermediate Similarity NPD2800 Approved
0.78 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7778 Intermediate Similarity NPD3751 Discontinued
0.7778 Intermediate Similarity NPD1613 Approved
0.7778 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7756 Intermediate Similarity NPD1551 Phase 2
0.7727 Intermediate Similarity NPD447 Suspended
0.7725 Intermediate Similarity NPD3749 Approved
0.7701 Intermediate Similarity NPD6559 Discontinued
0.7673 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7661 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7647 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7647 Intermediate Similarity NPD3787 Discontinued
0.7622 Intermediate Similarity NPD3226 Approved
0.7611 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7607 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7607 Intermediate Similarity NPD920 Approved
0.7602 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD2344 Approved
0.7593 Intermediate Similarity NPD2534 Approved
0.7593 Intermediate Similarity NPD2532 Approved
0.7593 Intermediate Similarity NPD2533 Approved
0.758 Intermediate Similarity NPD3748 Approved
0.7561 Intermediate Similarity NPD1653 Approved
0.756 Intermediate Similarity NPD7768 Phase 2
0.7532 Intermediate Similarity NPD2313 Discontinued
0.75 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1243 Approved
0.7485 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD3027 Phase 3
0.7452 Intermediate Similarity NPD6651 Approved
0.7451 Intermediate Similarity NPD9494 Approved
0.7443 Intermediate Similarity NPD5953 Discontinued
0.7434 Intermediate Similarity NPD1203 Approved
0.743 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7421 Intermediate Similarity NPD6100 Approved
0.7421 Intermediate Similarity NPD6099 Approved
0.7407 Intermediate Similarity NPD2309 Approved
0.7389 Intermediate Similarity NPD1933 Approved
0.7384 Intermediate Similarity NPD7199 Phase 2
0.7375 Intermediate Similarity NPD2346 Discontinued
0.7372 Intermediate Similarity NPD6233 Phase 2
0.7368 Intermediate Similarity NPD6234 Discontinued
0.7365 Intermediate Similarity NPD1548 Phase 1
0.7362 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.736 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD2799 Discontinued
0.7351 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7351 Intermediate Similarity NPD9269 Phase 2
0.7346 Intermediate Similarity NPD4628 Phase 3
0.733 Intermediate Similarity NPD7286 Phase 2
0.7326 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD7390 Discontinued
0.7317 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7303 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7293 Intermediate Similarity NPD8434 Phase 2
0.729 Intermediate Similarity NPD6832 Phase 2
0.7285 Intermediate Similarity NPD422 Phase 1
0.7278 Intermediate Similarity NPD6844 Discontinued
0.7278 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD2403 Approved
0.7237 Intermediate Similarity NPD9717 Approved
0.7234 Intermediate Similarity NPD6782 Approved
0.7234 Intermediate Similarity NPD6781 Approved
0.7234 Intermediate Similarity NPD6780 Approved
0.7234 Intermediate Similarity NPD6777 Approved
0.7234 Intermediate Similarity NPD6778 Approved
0.7234 Intermediate Similarity NPD6776 Approved
0.7234 Intermediate Similarity NPD6779 Approved
0.7211 Intermediate Similarity NPD7435 Discontinued
0.7207 Intermediate Similarity NPD7685 Pre-registration
0.7197 Intermediate Similarity NPD6798 Discontinued
0.7197 Intermediate Similarity NPD3268 Approved
0.7179 Intermediate Similarity NPD4908 Phase 1
0.7176 Intermediate Similarity NPD37 Approved
0.7171 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD1610 Phase 2
0.7169 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7161 Intermediate Similarity NPD2798 Approved
0.716 Intermediate Similarity NPD1471 Phase 3
0.7159 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD4965 Approved
0.7151 Intermediate Similarity NPD4967 Phase 2
0.7151 Intermediate Similarity NPD4966 Approved
0.7143 Intermediate Similarity NPD7033 Discontinued
0.7143 Intermediate Similarity NPD4308 Phase 3
0.7143 Intermediate Similarity NPD3225 Approved
0.7134 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7124 Intermediate Similarity NPD1608 Approved
0.7104 Intermediate Similarity NPD8150 Discontinued
0.7097 Intermediate Similarity NPD2797 Approved
0.7091 Intermediate Similarity NPD2354 Approved
0.7089 Intermediate Similarity NPD411 Approved
0.7089 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD9268 Approved
0.7079 Intermediate Similarity NPD7228 Approved
0.7073 Intermediate Similarity NPD2654 Approved
0.7063 Intermediate Similarity NPD6355 Discontinued
0.7059 Intermediate Similarity NPD4360 Phase 2
0.7059 Intermediate Similarity NPD4363 Phase 3
0.7045 Intermediate Similarity NPD5710 Approved
0.7045 Intermediate Similarity NPD5711 Approved
0.7033 Intermediate Similarity NPD8312 Approved
0.7033 Intermediate Similarity NPD8313 Approved
0.7031 Intermediate Similarity NPD7696 Phase 3
0.7031 Intermediate Similarity NPD7697 Approved
0.7031 Intermediate Similarity NPD7698 Approved
0.7013 Intermediate Similarity NPD1481 Phase 2
0.7006 Intermediate Similarity NPD2861 Phase 2
0.7006 Intermediate Similarity NPD5242 Approved
0.7006 Intermediate Similarity NPD3018 Phase 2
0.7 Intermediate Similarity NPD4060 Phase 1
0.6995 Remote Similarity NPD7870 Phase 2
0.6995 Remote Similarity NPD7871 Phase 2
0.6994 Remote Similarity NPD4288 Approved
0.699 Remote Similarity NPD7874 Approved
0.699 Remote Similarity NPD7875 Clinical (unspecified phase)
0.6987 Remote Similarity NPD1470 Approved
0.6987 Remote Similarity NPD3266 Approved
0.6987 Remote Similarity NPD3267 Approved
0.6974 Remote Similarity NPD7701 Phase 2
0.6968 Remote Similarity NPD6534 Approved
0.6968 Remote Similarity NPD6535 Approved
0.6964 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6949 Remote Similarity NPD7229 Phase 3
0.6948 Remote Similarity NPD1201 Approved
0.6948 Remote Similarity NPD1535 Discovery
0.6931 Remote Similarity NPD4361 Phase 2
0.6931 Remote Similarity NPD4362 Clinical (unspecified phase)
0.6928 Remote Similarity NPD17 Approved
0.6923 Remote Similarity NPD7584 Approved
0.6919 Remote Similarity NPD6386 Approved
0.6919 Remote Similarity NPD6385 Approved
0.6919 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6918 Remote Similarity NPD4625 Phase 3
0.6918 Remote Similarity NPD7095 Approved
0.6908 Remote Similarity NPD9545 Approved
0.6905 Remote Similarity NPD4357 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data