Natural Product: NPC131624

Natural Product IDNPC131624
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Wogonin
IUPAC Name 5,7-dihydroxy-8-methoxy-2-phenylchromen-4-one
Synonyms Wogonin
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL16171
PubChem CID 5281703
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0002585] O-methylated flavonoids
          • [CHEMONTID:0002593] 8-O-methylated flavonoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey XLTFNNCXVBYBSX-UHFFFAOYSA-N
Standard InCHI InChI=1S/C16H12O5/c1-20-15-12(19)7-10(17)14-11(18)8-13(21-16(14)15)9-5-3-2-4-6-9/h2-8,17,19H,1H3
SMILES COc1c(O)cc(c2c1oc(cc2=O)c1ccccc1)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   284.07 Volume:   282.482
?
Van der Waals volume.
Dense:   1.006 LogP:   3.266
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   2.792
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.319
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   2.0 Rigid Bonds:   18.0
TPSA:   79.9
?
Topological Polar Surface Area.
H-Bond Acceptor:   5.0
H-Bond Donor:   2.0 Rings:   3.0
Heavy Atoms:   5.0

MedChem Properties

QED Drug-Likeness Score:   0.756 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   2.288 Fsp3:   0.062
MCE-18:   17.0
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   1 PAINS Alert:   0
Colloidal aggregators:   0.39 Fluc inhibitor:   0.561
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.818
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.688
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.485 Promiscuous compounds:   0.682

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.933 MDCK Permeability:   -4.757
Pgp-inhibitor:   0.838 Pgp-substrate:   0.282
PAMPA:   0.19
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.002
20% Bioavailability (F20%):   0.059 30% Bioavailability (F30%):   0.476
50% Bioavailability (F50%):   0.662

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.686 MRP1:   0.934
Plasma Protein Binding (PPB):   98.59% Volume Distribution (VD):   -0.311
Fu: 0.721%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.598
OATP1B3 inhibitor:   0.903 BCRP inhibitor:   0.823
BSEP inhibitor:   0.978

ADMET: Metabolism

CYP1A2-inhibitor:   0.024 CYP1A2-substrate:   0.938
CYP2C19-inhibitor:   0.002 CYP2C19-substrate:   0.032
CYP2C9-inhibitor:   0.996 CYP2C9-substrate:   0.604
CYP2D6-inhibitor:   0.994 CYP2D6-substrate:   0.589
CYP3A4-inhibitor:   0.043 CYP3A4-substrate:   0.918
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.939
HLM stability:   0.692
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  3.3 Half-life (T1/2):  1.335

ADMET: Toxicity

hERG Blockers:  0.066 hERG Blockers (10um):  0.477
Human Hepatotoxicity (H-HT):  0.44 Drug-induced Liver Injury (DILI):  0.841
AMES Toxicity:  0.581 Rat Oral Acute Toxicity:  0.503
Maximum Recommended Daily Dose:  0.69 Skin Sensitization:  0.54
Carcinogencity:  0.671 Eye Corrosion:  0.125
Eye Irritation:  0.98 Respiratory Toxicity:  0.82
Drug-induced Neurotoxicity:  0.104 Ototoxicity:  0.092
Hematotoxicity:  0.184 Drug-induced Nephrotoxicity:  0.108
Genotoxicity:  0.9 RPMI-8226 Immunitoxicity:  0.088
A549 Cytotoxicity:  0.3 Hek293 Cytotoxicity:  0.543
BCF:   1.19
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.983
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.791
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.327
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. 2007; 2008 DOI[10.1007/s11746-010-1589-7]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.indcrop.2008.08.002]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. root n.a. DOI[10.1021/np50075a009]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. DOI[10.1111/ppl.12252]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota rhizomes n.a. n.a. PMID[11000020]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. cotyledon n.a. PMID[11283027]
NPO21324 Plantago major Species Plantaginaceae Eukaryota Entire plants the surroundings of Uppsala, Sweden 1998-SEP PMID[11421736]
NPO21324 Plantago major Species Plantaginaceae Eukaryota Whole Plant the surroundings of Uppsala, Sweden 1998-SEP PMID[11421736]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota Root barks n.a. n.a. PMID[11473427]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. seed n.a. PMID[12670184]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12713409]
NPO14915 Uvaria acuminata Species Annonaceae Eukaryota n.a. root n.a. PMID[14709883]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[15387643]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. root n.a. PMID[15467234]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. root n.a. PMID[15763368]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. leaf n.a. PMID[15894448]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. root n.a. PMID[15894448]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota Fruits n.a. n.a. PMID[16309325]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[16309326]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota aerial parts purchased in Juhuacun herbal market, Kunming, Yunnan Province, China 2002-Oct PMID[16562826]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. Seoul, Korea 2000-Jun PMID[16643034]
NPO20111 Anthemis auriculata Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[16643047]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[16755060]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. root n.a. PMID[17253088]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[17666848]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[17703773]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota root bark n.a. n.a. PMID[18198838]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[18239311]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. PMID[18357994]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[18505286]
NPO20111 Anthemis auriculata Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19555121]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota aerial parts n.a. n.a. PMID[19555121]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[19650637]
NPO11748 Eunicea knighti Species Plexauridae Eukaryota n.a. Santa Marta Bay, Colombian Caribbean 2007-MAY PMID[19778088]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19785430]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19829679]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. PMID[19948405]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19962306]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20078074]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. root n.a. PMID[21087019]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. root n.a. PMID[21090796]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota roots n.a. n.a. PMID[21090796]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. seed n.a. PMID[21348467]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. rhizome n.a. PMID[21401114]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. leaf n.a. PMID[21598983]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. leaf n.a. PMID[22026410]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[22314230]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. PMID[22537213]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruits n.a. n.a. PMID[23305920]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23521110]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. seed n.a. PMID[23672042]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. seed n.a. PMID[24895551]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[25068786]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota aerial part n.a. n.a. PMID[25442304]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota whole plants Nanning District, Guangxi Province, China 2012-Sep PMID[25647077]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. PMID[25749794]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[25844502]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota roots n.a. n.a. PMID[26259802]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota aerial parts Seoul, Korea n.a. PMID[26331882]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. PMID[26767291]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. bark n.a. PMID[26767291]
NPO25426 Arachis hypogaea Species n.a. n.a. Peanut Skins n.a. n.a. PMID[28231711]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[30758201]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[32141747]
NPO17543 Stizophyllum riparium Species Bignoniaceae Eukaryota n.a. n.a. n.a. PMID[3598599]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. PMID[36431807]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. PMID[36483735]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37569279]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[38830452]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. PMID[521818]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. kernel n.a. PMID[7092570]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. PMID[8377022]
NPO29667 Scutellariae radix n.a. n.a. n.a. n.a. n.a. n.a. PMID[9214730]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. PMID[9784154]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[9834167]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16610 Chromodoris hamiltoni Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19994 Scutellaria viscidula Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO31378 Scutellaria balcalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12972 Scutellaria epilobifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1161 Physalis minima Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21928 Clathrotropis brachypetala Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20111 Anthemis auriculata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22720 Kopsia hainanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14915 Uvaria acuminata Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22077 Dioscorea tokoro Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22340 Medicosma cunninghamii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25459 Scutellaria rehderiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23030 Dalbergia nigra Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19498 Caesalpinia tinctoria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11748 Eunicea knighti Species Plexauridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17543 Stizophyllum riparium Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. Database[FooDB]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. Database[FooDB]
NPO14992 Prunus persica Species Rosaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO25426 Arachis hypogaea Species n.a. n.a. Leaf n.a. n.a. Database[FooDB]
NPO14992 Prunus persica Species Rosaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO25426 Arachis hypogaea Species n.a. n.a. Oil n.a. n.a. Database[FooDB]
NPO14992 Prunus persica Species Rosaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO25426 Arachis hypogaea Species n.a. n.a. Seed n.a. n.a. Database[FooDB]
NPO14992 Prunus persica Species Rosaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. Database[FooDB]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22077 Dioscorea tokoro Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19994 Scutellaria viscidula Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21524 Scutellaria hypericifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5431 Scutellaria likiangensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25459 Scutellaria rehderiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12972 Scutellaria epilobifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19498 Caesalpinia tinctoria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1161 Physalis minima Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14915 Uvaria acuminata Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO25426 Arachis hypogaea Species n.a. n.a. Oils n.a. Database[Phenol-Explorer]
NPO25426 Arachis hypogaea Species n.a. n.a. Seeds n.a. Database[Phenol-Explorer]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21524 Scutellaria hypericifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22077 Dioscorea tokoro Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19994 Scutellaria viscidula Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25459 Scutellaria rehderiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14915 Uvaria acuminata Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12972 Scutellaria epilobifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1161 Physalis minima Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5431 Scutellaria likiangensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19498 Caesalpinia tinctoria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO31378 Scutellaria balcalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5431 Scutellaria likiangensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19994 Scutellaria viscidula Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25459 Scutellaria rehderiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21524 Scutellaria hypericifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22077 Dioscorea tokoro Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1161 Physalis minima Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16755 Saposhnikovia divaricata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28574 Oroxylum indicum Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10830 Dictamnus dasycarpus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1484 Bupleurum scorzonerifolium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23030 Dalbergia nigra Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20111 Anthemis auriculata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22077 Dioscorea tokoro Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14992 Prunus persica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26084 Vincetoxicum amplexicaule Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13473 Anodendron affine Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17023 Cusparia macrocarpa n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16610 Chromodoris hamiltoni Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16730 Helichrysum lindleyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3428 Undaria pinnatifida Species Alariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19994 Scutellaria viscidula Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22720 Kopsia hainanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3962 Parinari campestris Species Chrysobalanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24846 Astragalus membranaceus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11748 Eunicea knighti Species Plexauridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23145 Andropogon jwarancusa Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15658 Utricularia vulgaris Species Lentibulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29401 Bupleurum chinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1161 Physalis minima Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24254 Euphorbia sapinii Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11597 Stellaria dichotoma Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21324 Plantago major Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15715 Astragalus mongholicus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21524 Scutellaria hypericifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17543 Stizophyllum riparium Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19498 Caesalpinia tinctoria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16850 Eucommia ulmoides Species Eucommiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22522 Senecio speciosus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19198 Kalmia latifolia Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14691.1 Crambe hispanica subsp. abyssinica Subspecies Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22340 Medicosma cunninghamii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3578 Andrographis paniculata Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21928 Clathrotropis brachypetala Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1020 Petrosimonia monandra Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5431 Scutellaria likiangensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14915 Uvaria acuminata Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25459 Scutellaria rehderiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16039 Scutellaria barbata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25426 Arachis hypogaea Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1310 Individual protein Xanthine dehydrogenase Bos taurus Inhibition = 50.2 % PMID[3379415]
NPT1310 Individual protein Xanthine dehydrogenase Bos taurus IC50 = 176100.0 nM PMID[3379415]
NPT31 Individual protein Cyclooxygenase-2 Homo sapiens IC50 = 46000.0 nM PMID[25956953]
NPT1785 Individual protein Serotonin 7 (5-HT7) receptor Homo sapiens IC50 > 350000.0 nM PMID[12713409]
NPT226 Individual protein Beta-2 adrenergic receptor Homo sapiens Potency n.a. 20596.2 nM PubChem BioAssay data set
NPT135 Individual protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 1000.0 nM PubChem BioAssay data set
NPT154 Individual protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 12589.3 nM PubChem BioAssay data set
NPT108 Individual protein Estrogen receptor alpha Homo sapiens Activity = 37.3 % PMID[22137340]
NPT108 Individual protein Estrogen receptor alpha Homo sapiens Activity = 36.36 % PMID[22137340]
NPT270 Individual protein Nitric oxide synthase, inducible Mus musculus Inhibition = 40.0 % PMID[22366656]
NPT270 Individual protein Nitric oxide synthase, inducible Mus musculus IC50 = 7800.0 nM PMID[22366656]
NPT10 Individual protein Geminin Homo sapiens Potency n.a. 16360.1 nM PubChem BioAssay data set
NPT100 Individual protein Glutaminase kidney isoform, mitochondrial Homo sapiens Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT157 Individual protein Breast cancer type 1 susceptibility protein Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT1380 Individual protein Avian myoblastosis virus polyprotein II Avian myeloblastosis virus Inhibition = 36.8 % DOI[10.1007/s00044-011-9570-z]
NPT1371 Individual protein Cyclin-dependent kinase 2 Homo sapiens IC50 = 1460.0 nM PMID[30733087]
NPT1385 Individual protein Histone-lysine N-methyltransferase SETD7 Homo sapiens Inhibition = 4.0 % PMID[32088124]
NPT1385 Individual protein Histone-lysine N-methyltransferase SETD7 Homo sapiens Inhibition = 10.0 % PMID[32088124]
NPT1385 Individual protein Histone-lysine N-methyltransferase SETD7 Homo sapiens Inhibition = 19.0 % PMID[32088124]
NPT3347 Individual protein Cyclin-dependent kinase 9 Homo sapiens IC50 = 190.0 nM PMID[36205223]
NPT3347 Individual protein Cyclin-dependent kinase 9 Homo sapiens IC50 = 190.0 nM PMID[35814933]
NPT996 Protein complex GABA-A receptor; anion channel Homo sapiens Ki = 2041.74 nM PMID[11384234]
NPT67 Individual protein Cholinesterase Equus caballus Inhibition = -5.86 % PMID[23062825]
NPT446 Individual protein Rap guanine nucleotide exchange factor 3 Homo sapiens Potency n.a. 125892.5 nM PubChem BioAssay data set
NPT21762 Single protein Lysine-specific histone demethylase 1 Homo sapiens IC50 = 8870.0 nM PMID[30552007]
NPT66 Individual protein Acetylcholinesterase Electrophorus electricus Inhibition = -1.48 % PMID[23062825]
NPT4092 Protein complex CDK9/cyclin T1 Homo sapiens Inhibition = 67.8 % PMID[31238183]
NPT4092 Protein complex CDK9/cyclin T1 Homo sapiens IC50 = 190.0 nM PMID[30733087]
NPT4092 Protein complex CDK9/cyclin T1 Homo sapiens IC50 = 198.0 nM PMID[31238183]
NPT581 Individual protein Cyclooxygenase-2 Mus musculus Inhibition = 98.8 % PMID[14980657]
NPT581 Individual protein Cyclooxygenase-2 Mus musculus Inhibition = 103.0 % PMID[19233646]
NPT581 Individual protein Cyclooxygenase-2 Mus musculus IC50 = 1070.0 nM PMID[19233646]
NPT1644 Protein family Trypsin Homo sapiens IC50 = 105000.0 nM PMID[9214730]
NPT62 Individual protein 6-phospho-1-fructokinase Trypanosoma brucei Potency n.a. 37933.0 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency n.a. 50118.7 nM PubChem BioAssay data set
NPT52 Individual protein Pyruvate kinase isozymes M1/M2 Homo sapiens Ki = 3530.0 nM PMID[34726055]
NPT52 Individual protein Pyruvate kinase isozymes M1/M2 Homo sapiens IC50 = 2010.0 nM PMID[34726055]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT113 Cell line RAW264.7 Mus musculus IC50 = 1080.0 nM PMID[14980657]
NPT113 Cell line RAW264.7 Mus musculus Activity = 111.0 % PMID[19233646]
NPT3089 Cell line SW1353 Homo sapiens IC50 = 39000.0 nM PMID[19555121]
NPT520 Cell line 3T3-L1 Mus musculus Activity = 19.2 % PMID[21493073]
NPT520 Cell line 3T3-L1 Mus musculus Activity = 9.6 % PMID[21493073]
NPT520 Cell line 3T3-L1 Mus musculus Activity = 7.8 % PMID[21493073]
NPT520 Cell line 3T3-L1 Mus musculus Activity = 16.6 % PMID[21493073]
NPT65 Cell line HepG2 Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT368 Cell line SN12C Homo sapiens GI50 n.a. 90573.26 nM PubChem BioAssay data set
NPT367 Cell line MDA-N Homo sapiens GI50 n.a. 84722.74 nM PubChem BioAssay data set
NPT370 Cell line NCI-H23 Homo sapiens GI50 n.a. 42559.84 nM PubChem BioAssay data set
NPT371 Cell line UO-31 Homo sapiens GI50 n.a. 2582.26 nM PubChem BioAssay data set
NPT369 Cell line ACHN Homo sapiens GI50 n.a. 31405.09 nM PubChem BioAssay data set
NPT116 Cell line HL-60 Homo sapiens GI50 n.a. 21527.82 nM PubChem BioAssay data set
NPT372 Cell line HOP-92 Homo sapiens GI50 n.a. 100000.0 nM PubChem BioAssay data set
NPT374 Cell line SF-539 Homo sapiens GI50 n.a. 42461.96 nM PubChem BioAssay data set
NPT90 Cell line DU-145 Homo sapiens GI50 n.a. 23550.49 nM PubChem BioAssay data set
NPT375 Cell line Malme-3M Homo sapiens GI50 n.a. 85310.01 nM PubChem BioAssay data set
NPT373 Cell line SK-MEL-5 Homo sapiens GI50 n.a. 34197.94 nM PubChem BioAssay data set
NPT111 Cell line K562 Homo sapiens GI50 n.a. 25118.86 nM PubChem BioAssay data set
NPT377 Cell line OVCAR-3 Homo sapiens GI50 n.a. 24490.63 nM PubChem BioAssay data set
NPT379 Cell line HOP-62 Homo sapiens GI50 n.a. 21677.04 nM PubChem BioAssay data set
NPT112 Cell line MOLT-4 Homo sapiens GI50 n.a. 36057.86 nM PubChem BioAssay data set
NPT378 Cell line NCI/ADR-RES Homo sapiens GI50 n.a. 60534.09 nM PubChem BioAssay data set
NPT380 Cell line U-251 Homo sapiens GI50 n.a. 63241.19 nM PubChem BioAssay data set
NPT381 Cell line OVCAR-8 Homo sapiens GI50 n.a. 52360.04 nM PubChem BioAssay data set
NPT382 Cell line OVCAR-5 Homo sapiens GI50 n.a. 49659.23 nM PubChem BioAssay data set
NPT383 Cell line SNB-19 Homo sapiens GI50 n.a. 58748.94 nM PubChem BioAssay data set
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 n.a. 100000.0 nM PubChem BioAssay data set
NPT385 Cell line SR Homo sapiens GI50 n.a. 22080.05 nM PubChem BioAssay data set
NPT323 Cell line SW-620 Homo sapiens GI50 n.a. 54075.43 nM PubChem BioAssay data set
NPT384 Cell line TK-10 Homo sapiens GI50 n.a. 60813.5 nM PubChem BioAssay data set
NPT455 Cell line NCI-H522 Homo sapiens GI50 n.a. 40550.85 nM PubChem BioAssay data set
NPT387 Cell line M14 Homo sapiens GI50 n.a. 69023.98 nM PubChem BioAssay data set
NPT386 Cell line KM12 Homo sapiens GI50 n.a. 33962.53 nM PubChem BioAssay data set
NPT388 Cell line NCI-H322M Homo sapiens GI50 n.a. 55847.02 nM PubChem BioAssay data set
NPT389 Cell line RPMI-8226 Homo sapiens GI50 n.a. 17458.22 nM PubChem BioAssay data set
NPT456 Cell line OVCAR-4 Homo sapiens GI50 n.a. 77446.18 nM PubChem BioAssay data set
NPT457 Cell line BT-549 Homo sapiens GI50 n.a. 55207.74 nM PubChem BioAssay data set
NPT390 Cell line LOX IMVI Homo sapiens GI50 n.a. 22438.82 nM PubChem BioAssay data set
NPT147 Cell line SK-MEL-2 Homo sapiens GI50 n.a. 43651.58 nM PubChem BioAssay data set
NPT81 Cell line A549 Homo sapiens GI50 n.a. 42854.85 nM PubChem BioAssay data set
NPT391 Cell line HCC 2998 Homo sapiens GI50 n.a. 35237.09 nM PubChem BioAssay data set
NPT392 Cell line SNB-75 Homo sapiens GI50 n.a. 56104.8 nM PubChem BioAssay data set
NPT148 Cell line HCT-15 Homo sapiens GI50 n.a. 35075.19 nM PubChem BioAssay data set
NPT395 Cell line SF-268 Homo sapiens GI50 n.a. 37931.5 nM PubChem BioAssay data set
NPT393 Cell line HCT-116 Homo sapiens GI50 n.a. 24322.04 nM PubChem BioAssay data set
NPT83 Cell line MCF7 Homo sapiens GI50 n.a. 35563.13 nM PubChem BioAssay data set
NPT394 Cell line EKVX Homo sapiens GI50 n.a. 61517.69 nM PubChem BioAssay data set
NPT306 Cell line PC-3 Homo sapiens GI50 n.a. 51050.5 nM PubChem BioAssay data set
NPT146 Cell line SK-OV-3 Homo sapiens GI50 n.a. 77803.66 nM PubChem BioAssay data set
NPT397 Cell line NCI-H460 Homo sapiens GI50 n.a. 26242.19 nM PubChem BioAssay data set
NPT398 Cell line UACC-62 Homo sapiens GI50 n.a. 35075.19 nM PubChem BioAssay data set
NPT308 Cell line CAKI-1 Homo sapiens GI50 n.a. 48640.72 nM PubChem BioAssay data set
NPT400 Cell line MDA-MB-435 Homo sapiens GI50 n.a. 65463.62 nM PubChem BioAssay data set
NPT399 Cell line SF-295 Homo sapiens GI50 n.a. 34514.37 nM PubChem BioAssay data set
NPT402 Cell line Hs-578T Homo sapiens GI50 n.a. 18663.8 nM PubChem BioAssay data set
NPT458 Cell line IGROV-1 Homo sapiens GI50 n.a. 29444.22 nM PubChem BioAssay data set
NPT401 Cell line 786-0 Homo sapiens GI50 n.a. 51880.0 nM PubChem BioAssay data set
NPT403 Cell line UACC-257 Homo sapiens GI50 n.a. 87902.25 nM PubChem BioAssay data set
NPT404 Cell line CCRF-CEM Homo sapiens GI50 n.a. 26977.39 nM PubChem BioAssay data set
NPT405 Cell line NCI-H226 Homo sapiens GI50 n.a. 40926.07 nM PubChem BioAssay data set
NPT170 Cell line SK-MEL-28 Homo sapiens GI50 n.a. 100000.0 nM PubChem BioAssay data set
NPT139 Cell line HT-29 Homo sapiens GI50 n.a. 51880.0 nM PubChem BioAssay data set
NPT406 Cell line RXF 393 Homo sapiens GI50 n.a. 17498.47 nM PubChem BioAssay data set
NPT407 Cell line COLO 205 Homo sapiens GI50 n.a. 64268.77 nM PubChem BioAssay data set
NPT660 Cell line SW480 Homo sapiens IC50 = 35060.0 nM DOI[10.1039/C5MD00163C]
NPT139 Cell line HT-29 Homo sapiens IC50 = 39550.0 nM DOI[10.1039/C5MD00163C]
NPT65 Cell line HepG2 Homo sapiens IC50 = 37890.0 nM DOI[10.1039/C5MD00163C]
NPT65 Cell line HepG2 Homo sapiens IC50 = 19000.0 nM PMID[28117202]
NPT81 Cell line A549 Homo sapiens IC50 = 15800.0 nM PMID[28117202]
NPT65 Cell line HepG2 Homo sapiens IC50 = 19054.61 nM PMID[28117202]
NPT81 Cell line A549 Homo sapiens IC50 = 20100.0 nM PMID[28987604]
NPT83 Cell line MCF7 Homo sapiens IC50 = 28000.0 nM PMID[28987604]
NPT319 Cell line B16 Mus musculus IC50 = 26400.0 nM PMID[28987604]
NPT65 Cell line HepG2 Homo sapiens IC50 = 19500.0 nM PMID[28987604]
NPT65 Cell line HepG2 Homo sapiens IC50 = 17600.0 nM PMID[31238183]
NPT81 Cell line A549 Homo sapiens IC50 = 42300.0 nM PMID[31238183]
NPT393 Cell line HCT-116 Homo sapiens IC50 = 27300.0 nM PMID[31238183]
NPT1649 Cell line MV4-11 Homo sapiens IC50 = 30700.0 nM PMID[31238183]
NPT83 Cell line MCF7 Homo sapiens IC50 = 30000.0 nM PMID[31300317]
NPT83 Cell line MCF7 Homo sapiens IC50 = 30000.0 nM PMID[34411892]
NPT83 Cell line MCF7 Homo sapiens IC50 = 30.0 nM PMID[36205223]
NPT83 Cell line MCF7 Homo sapiens IC50 = 30000.0 nM PMID[32707525]
NPT30053 Protein-protein interaction Protein cereblon/CDK9 Homo sapiens DC50 > 30.0 uM PMID[35814933]
NPT28438 Unchecked Unchecked n.a. Ratio = 1.4 n.a. PMID[35536548]
NPT25662 Protein complex CDK8/Cyclin C Homo sapiens IC50 = 5900.0 nM PMID[35536548]
NPT1175 Organism Spodoptera litura Spodoptera litura ED50 = 2.0 umol/cm2 PMID[12517100]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 36870.0 nM DOI[10.1039/C5MD00163C]
NPT329 Organism Trichophyton rubrum Trichophyton rubrum MIC = 60.0 ug.mL-1 PMID[31427220]
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes MIC = 60.0 ug.mL-1 PMID[31427220]
NPT963 Organism Hepatitis B virus Hepatitis B virus IC50 = 4.0 ug.mL-1 PMID[24549242]
NPT963 Organism Hepatitis B virus Hepatitis B virus Inhibition = 45.4 % PMID[24549242]
NPT87 Organism Aspergillus fumigatus Aspergillus fumigatus MIC = 230.0 ug.mL-1 PMID[31427220]
NPT24345 Protein complex CDK7/Cyclin H/MNAT1 Homo sapiens IC50 = 12300.0 nM PMID[30733087]
NPT2 Others Unspecified n.a. IC50 > 100000.0 nM PMID[15081021]
NPT2 Others Unspecified n.a. Potency n.a. 9200.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 12589.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 11220.2 nM PubChem BioAssay data set
NPT28560 Cell line BMDC n.a. Activity = 65.0 % PMID[35536548]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference
Homo sapiens Liver CL = 11.3 mL.min-1.g-1 PMID[35536548]





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC131624 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8163 Intermediate Similarity NPC301323
0.8163 Intermediate Similarity NPC600177
0.7647 Intermediate Similarity NPC188203
0.75 Intermediate Similarity NPC222830
0.7255 Intermediate Similarity NPC602963
0.7115 Intermediate Similarity NPC306821
0.6923 Remote Similarity NPC245546
0.6545 Remote Similarity NPC142540
0.6296 Remote Similarity NPC293183
0.6182 Remote Similarity NPC127447
0.6182 Remote Similarity NPC187498
0.6176 Remote Similarity NPC472385
0.6087 Remote Similarity NPC101191
0.5893 Remote Similarity NPC274327
0.5893 Remote Similarity NPC488084
0.5893 Remote Similarity NPC275722
0.5893 Remote Similarity NPC275836
0.5893 Remote Similarity NPC239128
0.5849 Remote Similarity NPC78540
0.5849 Remote Similarity NPC259713
0.5789 Remote Similarity NPC53181
0.5789 Remote Similarity NPC18260
0.5614 Remote Similarity NPC609062
0.5593 Remote Similarity NPC146165
0.5517 Remote Similarity NPC201451
0.5517 Remote Similarity NPC231772
0.5517 Remote Similarity NPC176665
0.55 Remote Similarity NPC4455
0.5424 Remote Similarity NPC600155
0.537 Remote Similarity NPC197425
0.5357 Remote Similarity NPC602026
0.5345 Remote Similarity NPC71334
0.5345 Remote Similarity NPC194281
0.5333 Remote Similarity NPC183597
0.5333 Remote Similarity NPC253634
0.5254 Remote Similarity NPC176775
0.5254 Remote Similarity NPC231018
0.5254 Remote Similarity NPC601901
0.5246 Remote Similarity NPC52005
0.5246 Remote Similarity NPC606140
0.5246 Remote Similarity NPC610401
0.5205 Remote Similarity NPC198324
0.5167 Remote Similarity NPC217186
0.5161 Remote Similarity NPC183950
0.5135 Remote Similarity NPC210094
0.5085 Remote Similarity NPC241498
0.5085 Remote Similarity NPC52611
0.5085 Remote Similarity NPC184536
0.5085 Remote Similarity NPC156222
0.5085 Remote Similarity NPC29353
0.5077 Remote Similarity NPC602829

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC131624 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data