Structure

Physi-Chem Properties

Molecular Weight:  388.12
Volume:  378.037
LogP:  2.818
LogD:  2.647
LogS:  -4.146
# Rotatable Bonds:  6
TPSA:  96.59
# H-Bond Aceptor:  8
# H-Bond Donor:  1
# Rings:  3
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.688
Synthetic Accessibility Score:  2.537
Fsp3:  0.25
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.596
MDCK Permeability:  2.4005277737160213e-05
Pgp-inhibitor:  0.998
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.017
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  0.004

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.023
Plasma Protein Binding (PPB):  76.51648712158203%
Volume Distribution (VD):  0.878
Pgp-substrate:  28.442054748535156%

ADMET: Metabolism

CYP1A2-inhibitor:  0.314
CYP1A2-substrate:  0.983
CYP2C19-inhibitor:  0.482
CYP2C19-substrate:  0.816
CYP2C9-inhibitor:  0.669
CYP2C9-substrate:  0.899
CYP2D6-inhibitor:  0.013
CYP2D6-substrate:  0.9
CYP3A4-inhibitor:  0.466
CYP3A4-substrate:  0.707

ADMET: Excretion

Clearance (CL):  4.522
Half-life (T1/2):  0.541

ADMET: Toxicity

hERG Blockers:  0.276
Human Hepatotoxicity (H-HT):  0.096
Drug-inuced Liver Injury (DILI):  0.926
AMES Toxicity:  0.309
Rat Oral Acute Toxicity:  0.362
Maximum Recommended Daily Dose:  0.031
Skin Sensitization:  0.316
Carcinogencity:  0.045
Eye Corrosion:  0.003
Eye Irritation:  0.326
Respiratory Toxicity:  0.114

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  Natural Product: NPC167815

Natural Product ID:  NPC167815
Common Name*:   4'-Demethylnobiletin
IUPAC Name:   2-(4-hydroxy-3-methoxyphenyl)-5,6,7,8-tetramethoxychromen-4-one
Synonyms:   4'-Demethylnobiletin
Standard InCHIKey:  NHMZUDOXUOAEOH-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C20H20O8/c1-23-14-8-10(6-7-11(14)21)13-9-12(22)15-16(24-2)18(25-3)20(27-5)19(26-4)17(15)28-13/h6-9,21H,1-5H3
SMILES:  COc1cc(ccc1O)c1cc(=O)c2c(c(c(c(c2o1)OC)OC)OC)OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL225703
PubChem CID:   21593928
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0002585] O-methylated flavonoids
          • [CHEMONTID:0002593] 8-O-methylated flavonoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15117 Chromolaena odorata Species Asteraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)88710-5]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[10096857]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO25415 Pseudopterogorgia kallos Species Gorgoniidae Eukaryota n.a. n.a. n.a. PMID[15128261]
NPO24744 Chloranthus tianmushanensis Species Chloranthaceae Eukaryota leaves n.a. n.a. PMID[18357995]
NPO24475 Aceriphyllum rossii n.a. n.a. n.a. n.a. n.a. n.a. PMID[19618898]
NPO15117 Chromolaena odorata Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23186307]
NPO23805 Arnica nevadensis Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23501116]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23507152]
NPO22194 Kaempferia pulchra Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[25919052]
NPO22194 Kaempferia pulchra Species Zingiberaceae Eukaryota Rhizomes n.a. n.a. PMID[31836445]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25045 Senecio squalidus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25258 Seriphidium cinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25623 Taxodium mucronatum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25359 Isodon kameba Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22736 Drosera peltata Species Droseraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6714 Securidaca inappendiculata Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO6714 Securidaca inappendiculata Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25045 Senecio squalidus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25258 Seriphidium cinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15117 Chromolaena odorata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22736 Drosera peltata Species Droseraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25623 Taxodium mucronatum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25359 Isodon kameba Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25258 Seriphidium cinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25187 Cladonia evansii Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25291 Lactarius scrobiculatus Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22194 Kaempferia pulchra Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25234 Epaltes gariepina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24744 Chloranthus tianmushanensis Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23691 Pyrosoma giganteum Species Pyrosomatidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18352 Anaxagorea clavata Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26128 Clonostachys rosea Species Bionectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7445 Pteris prolifera Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25671 Gardenia fosbergii Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25443 Citrus reticulata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24929 Aria pallescens Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25699 Vitex madiensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24068 Prunus laurocerasus Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28665 Sesbania punicea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26042 Agnorhiza bolanderi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25471 Chromolaena pulchella Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23805 Arnica nevadensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24675 Quercus aegilops Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25623 Taxodium mucronatum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1794 Ilex affinis Species Aquifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22736 Drosera peltata Species Droseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25258 Seriphidium cinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24218 Fusarium gibbosum Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23963 Odixia angusta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25390 Pterocarpus grandiflorus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24599 Streptomyces althioticus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO24987 Simira eliezeriana Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25090 Araujia sericifera Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24291 Rhizobium phaseoli Species Rhizobiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO25045 Senecio squalidus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24640 Echinops amplexicaulis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24475 Aceriphyllum rossii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO24511 Dipterocarpus alatus Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20833 Beyeria brevifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25415 Pseudopterogorgia kallos Species Gorgoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24830 Prosopis glandulosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20823 Stenostomum lucidum Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23453 Pheidole pallidula Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25529 Bursaria spinosa Species Pittosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25359 Isodon kameba Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24383 Ficus formosana Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25144 Artemisia monogyna Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24556 Bassia butyracea Species Abylidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6714 Securidaca inappendiculata Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23567 Coccus fagi Species Coccidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25326 Dendrosenecio kilimanjari Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15117 Chromolaena odorata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7552 Alligator mississippiensis Species Alligatoridae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT116 Cell Line HL-60 Homo sapiens IC50 = 47410.0 nM PMID[561301]
NPT116 Cell Line HL-60 Homo sapiens AC50 = 87100.0 nM PMID[561301]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 443.7 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 495.7 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 163.9 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 224.2 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 168.9 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 118.5 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 489.9 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 563.5 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 195.3 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 243.5 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 219.1 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 182.4 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 511.2 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 551.9 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 232.6 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 376.3 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 285.4 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 233.2 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 551.2 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 574.1 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 267.7 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 394.0 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 299.6 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 283.7 Miller_unit PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 28.7 % PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 80.9 % PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 72.4 % PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium ID50 = 0.04 mM PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium ID50 = 0.16 mM PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 58.2 % PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 76.4 % PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium ID50 = 0.3 mM PMID[561303]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium ID50 = 0.34 mM PMID[561303]
NPT68 Individual Protein Aldose reductase Rattus norvegicus IC50 = 18620.87 nM PMID[561304]
NPT2 Others Unspecified IC50 = 3700.0 nM PMID[561305]
NPT2 Others Unspecified IC50 = 5500.0 nM PMID[561305]
NPT2 Others Unspecified IC50 = 3700.0 nM PMID[561306]
NPT2 Others Unspecified IC50 = 5500.0 nM PMID[561306]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI = 30.7 % PMID[561307]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC167815 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC146165
1.0 High Similarity NPC163780
1.0 High Similarity NPC183597
1.0 High Similarity NPC138360
1.0 High Similarity NPC128863
1.0 High Similarity NPC2476
1.0 High Similarity NPC227325
1.0 High Similarity NPC201136
1.0 High Similarity NPC4455
1.0 High Similarity NPC50715
1.0 High Similarity NPC280339
1.0 High Similarity NPC92659
1.0 High Similarity NPC196439
0.9932 High Similarity NPC255350
0.9932 High Similarity NPC176775
0.9932 High Similarity NPC274327
0.9932 High Similarity NPC250822
0.9932 High Similarity NPC276409
0.9932 High Similarity NPC231018
0.9932 High Similarity NPC183878
0.9932 High Similarity NPC69394
0.9932 High Similarity NPC75279
0.9932 High Similarity NPC160951
0.9932 High Similarity NPC145379
0.9932 High Similarity NPC47781
0.9932 High Similarity NPC22519
0.9866 High Similarity NPC75215
0.9866 High Similarity NPC93376
0.9866 High Similarity NPC224137
0.9866 High Similarity NPC227192
0.9866 High Similarity NPC189179
0.9865 High Similarity NPC213622
0.9865 High Similarity NPC256612
0.9865 High Similarity NPC208197
0.9865 High Similarity NPC20830
0.9864 High Similarity NPC25270
0.9864 High Similarity NPC198826
0.9864 High Similarity NPC100887
0.9864 High Similarity NPC212678
0.9864 High Similarity NPC57030
0.9864 High Similarity NPC120163
0.9864 High Similarity NPC131624
0.9864 High Similarity NPC156222
0.9864 High Similarity NPC142540
0.9864 High Similarity NPC241498
0.9864 High Similarity NPC162313
0.9864 High Similarity NPC83508
0.9864 High Similarity NPC71334
0.9864 High Similarity NPC188203
0.9864 High Similarity NPC222830
0.9864 High Similarity NPC301323
0.9864 High Similarity NPC239128
0.9864 High Similarity NPC275836
0.9864 High Similarity NPC187498
0.9864 High Similarity NPC293183
0.9864 High Similarity NPC256283
0.9864 High Similarity NPC275722
0.98 High Similarity NPC22472
0.98 High Similarity NPC176300
0.98 High Similarity NPC19687
0.98 High Similarity NPC105242
0.98 High Similarity NPC4481
0.98 High Similarity NPC204854
0.98 High Similarity NPC288669
0.98 High Similarity NPC7846
0.98 High Similarity NPC18607
0.98 High Similarity NPC25495
0.98 High Similarity NPC9609
0.98 High Similarity NPC115798
0.98 High Similarity NPC18772
0.98 High Similarity NPC143828
0.98 High Similarity NPC191459
0.98 High Similarity NPC261004
0.98 High Similarity NPC300943
0.98 High Similarity NPC253634
0.98 High Similarity NPC152166
0.98 High Similarity NPC130894
0.9799 High Similarity NPC247017
0.9799 High Similarity NPC474520
0.9799 High Similarity NPC98661
0.9799 High Similarity NPC49824
0.9796 High Similarity NPC226973
0.9796 High Similarity NPC208043
0.9733 High Similarity NPC235215
0.9733 High Similarity NPC472438
0.9733 High Similarity NPC305663
0.9733 High Similarity NPC7973
0.9733 High Similarity NPC163524
0.9733 High Similarity NPC78302
0.9733 High Similarity NPC287979
0.9733 High Similarity NPC110070
0.9733 High Similarity NPC203891
0.9733 High Similarity NPC29841
0.9733 High Similarity NPC176665
0.9733 High Similarity NPC470402
0.9733 High Similarity NPC101830
0.9732 High Similarity NPC201451
0.9732 High Similarity NPC26227
0.9732 High Similarity NPC44079
0.973 High Similarity NPC39732
0.973 High Similarity NPC60972
0.9728 High Similarity NPC306821
0.9728 High Similarity NPC184136
0.9669 High Similarity NPC193842
0.9667 High Similarity NPC55619
0.9667 High Similarity NPC245546
0.9667 High Similarity NPC178854
0.9667 High Similarity NPC200388
0.9667 High Similarity NPC472916
0.9667 High Similarity NPC268161
0.9667 High Similarity NPC43243
0.9667 High Similarity NPC100916
0.9667 High Similarity NPC266960
0.9667 High Similarity NPC292107
0.9664 High Similarity NPC86485
0.9662 High Similarity NPC308451
0.966 High Similarity NPC137062
0.966 High Similarity NPC223579
0.966 High Similarity NPC259713
0.966 High Similarity NPC183950
0.966 High Similarity NPC287101
0.966 High Similarity NPC296197
0.966 High Similarity NPC52005
0.966 High Similarity NPC216318
0.966 High Similarity NPC328119
0.966 High Similarity NPC177298
0.966 High Similarity NPC17286
0.966 High Similarity NPC48479
0.9605 High Similarity NPC476980
0.9603 High Similarity NPC96167
0.9603 High Similarity NPC474208
0.9603 High Similarity NPC472913
0.9603 High Similarity NPC48208
0.9603 High Similarity NPC475267
0.9603 High Similarity NPC474836
0.9603 High Similarity NPC472911
0.9603 High Similarity NPC472910
0.9603 High Similarity NPC222814
0.9603 High Similarity NPC162869
0.9603 High Similarity NPC245758
0.9603 High Similarity NPC156057
0.9603 High Similarity NPC78225
0.9603 High Similarity NPC472914
0.96 High Similarity NPC214138
0.96 High Similarity NPC189960
0.96 High Similarity NPC32557
0.96 High Similarity NPC2928
0.9597 High Similarity NPC199100
0.9597 High Similarity NPC120537
0.9597 High Similarity NPC180234
0.9597 High Similarity NPC27208
0.9597 High Similarity NPC301123
0.9597 High Similarity NPC134677
0.9595 High Similarity NPC45873
0.9592 High Similarity NPC120464
0.9592 High Similarity NPC195202
0.9545 High Similarity NPC272064
0.9542 High Similarity NPC266314
0.9542 High Similarity NPC258331
0.9536 High Similarity NPC255106
0.9536 High Similarity NPC235165
0.9536 High Similarity NPC191146
0.9536 High Similarity NPC265511
0.9536 High Similarity NPC68093
0.9533 High Similarity NPC236223
0.9533 High Similarity NPC246204
0.9533 High Similarity NPC167091
0.9533 High Similarity NPC124714
0.9533 High Similarity NPC206238
0.9533 High Similarity NPC472915
0.9533 High Similarity NPC280937
0.9533 High Similarity NPC292214
0.9533 High Similarity NPC88645
0.9533 High Similarity NPC58382
0.9533 High Similarity NPC250557
0.9533 High Similarity NPC162351
0.9533 High Similarity NPC270620
0.9533 High Similarity NPC78326
0.9533 High Similarity NPC179126
0.9533 High Similarity NPC271779
0.953 High Similarity NPC225731
0.953 High Similarity NPC252933
0.953 High Similarity NPC125062
0.953 High Similarity NPC133953
0.953 High Similarity NPC50403
0.953 High Similarity NPC200740
0.953 High Similarity NPC54394
0.953 High Similarity NPC117579
0.953 High Similarity NPC28274
0.9527 High Similarity NPC92722
0.9527 High Similarity NPC102003
0.9524 High Similarity NPC30647
0.9524 High Similarity NPC62536
0.9524 High Similarity NPC61871
0.9524 High Similarity NPC55557
0.9524 High Similarity NPC12200
0.9524 High Similarity NPC108406
0.9524 High Similarity NPC275772
0.9524 High Similarity NPC239312
0.9524 High Similarity NPC85233

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC167815 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9932 High Similarity NPD2801 Approved
0.9338 High Similarity NPD1934 Approved
0.932 High Similarity NPD1511 Approved
0.9195 High Similarity NPD1512 Approved
0.9156 High Similarity NPD3882 Suspended
0.915 High Similarity NPD2393 Clinical (unspecified phase)
0.9091 High Similarity NPD3817 Phase 2
0.9 High Similarity NPD3818 Discontinued
0.8994 High Similarity NPD6168 Clinical (unspecified phase)
0.8994 High Similarity NPD6167 Clinical (unspecified phase)
0.8994 High Similarity NPD6166 Phase 2
0.8957 High Similarity NPD4338 Clinical (unspecified phase)
0.8944 High Similarity NPD7054 Approved
0.8889 High Similarity NPD7472 Approved
0.8773 High Similarity NPD7074 Phase 3
0.875 High Similarity NPD4378 Clinical (unspecified phase)
0.872 High Similarity NPD6797 Phase 2
0.8671 High Similarity NPD4868 Clinical (unspecified phase)
0.8667 High Similarity NPD7251 Discontinued
0.8625 High Similarity NPD5494 Approved
0.8614 High Similarity NPD7808 Phase 3
0.859 High Similarity NPD4380 Phase 2
0.8519 High Similarity NPD6232 Discontinued
0.85 High Similarity NPD4381 Clinical (unspecified phase)
0.8491 Intermediate Similarity NPD5402 Approved
0.8476 Intermediate Similarity NPD7473 Discontinued
0.8411 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8411 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.84 Intermediate Similarity NPD1510 Phase 2
0.8387 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8385 Intermediate Similarity NPD7075 Discontinued
0.8355 Intermediate Similarity NPD1549 Phase 2
0.8344 Intermediate Similarity NPD2796 Approved
0.8323 Intermediate Similarity NPD6799 Approved
0.8313 Intermediate Similarity NPD1465 Phase 2
0.8255 Intermediate Similarity NPD943 Approved
0.8255 Intermediate Similarity NPD1240 Approved
0.825 Intermediate Similarity NPD6801 Discontinued
0.8232 Intermediate Similarity NPD1247 Approved
0.8199 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8199 Intermediate Similarity NPD7819 Suspended
0.8166 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8155 Intermediate Similarity NPD5844 Phase 1
0.8155 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8148 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8146 Intermediate Similarity NPD1607 Approved
0.8133 Intermediate Similarity NPD3926 Phase 2
0.8117 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8075 Intermediate Similarity NPD7411 Suspended
0.805 Intermediate Similarity NPD5403 Approved
0.8012 Intermediate Similarity NPD6599 Discontinued
0.8012 Intermediate Similarity NPD6959 Discontinued
0.7987 Intermediate Similarity NPD2935 Discontinued
0.7987 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7961 Intermediate Similarity NPD230 Phase 1
0.7961 Intermediate Similarity NPD447 Suspended
0.7937 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7925 Intermediate Similarity NPD5401 Approved
0.7919 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7907 Intermediate Similarity NPD6559 Discontinued
0.7898 Intermediate Similarity NPD3750 Approved
0.7895 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7895 Intermediate Similarity NPD1613 Approved
0.7892 Intermediate Similarity NPD919 Approved
0.7888 Intermediate Similarity NPD1653 Approved
0.7834 Intermediate Similarity NPD2800 Approved
0.7815 Intermediate Similarity NPD3027 Phase 3
0.7806 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7797 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7763 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7756 Intermediate Similarity NPD1551 Phase 2
0.7736 Intermediate Similarity NPD6190 Approved
0.7725 Intermediate Similarity NPD3749 Approved
0.7702 Intermediate Similarity NPD2533 Approved
0.7702 Intermediate Similarity NPD2534 Approved
0.7702 Intermediate Similarity NPD2532 Approved
0.7692 Intermediate Similarity NPD7199 Phase 2
0.7682 Intermediate Similarity NPD9494 Approved
0.7679 Intermediate Similarity NPD6234 Discontinued
0.7673 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7665 Intermediate Similarity NPD7768 Phase 2
0.7651 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.764 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7622 Intermediate Similarity NPD3226 Approved
0.7613 Intermediate Similarity NPD1933 Approved
0.761 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7609 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7607 Intermediate Similarity NPD920 Approved
0.7602 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD2344 Approved
0.758 Intermediate Similarity NPD3748 Approved
0.7572 Intermediate Similarity NPD3751 Discontinued
0.7564 Intermediate Similarity NPD6651 Approved
0.7562 Intermediate Similarity NPD4628 Phase 3
0.7544 Intermediate Similarity NPD3787 Discontinued
0.7543 Intermediate Similarity NPD5953 Discontinued
0.7532 Intermediate Similarity NPD6100 Approved
0.7532 Intermediate Similarity NPD6099 Approved
0.7532 Intermediate Similarity NPD2313 Discontinued
0.7528 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7514 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1243 Approved
0.75 Intermediate Similarity NPD7685 Pre-registration
0.7485 Intermediate Similarity NPD37 Approved
0.7485 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD2799 Discontinued
0.7458 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7456 Intermediate Similarity NPD4967 Phase 2
0.7456 Intermediate Similarity NPD4966 Approved
0.7456 Intermediate Similarity NPD4965 Approved
0.7434 Intermediate Similarity NPD1203 Approved
0.7429 Intermediate Similarity NPD7286 Phase 2
0.7423 Intermediate Similarity NPD7390 Discontinued
0.7407 Intermediate Similarity NPD2309 Approved
0.7403 Intermediate Similarity NPD6832 Phase 2
0.7381 Intermediate Similarity NPD6844 Discontinued
0.7375 Intermediate Similarity NPD2346 Discontinued
0.7371 Intermediate Similarity NPD7228 Approved
0.7365 Intermediate Similarity NPD1548 Phase 1
0.7362 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7351 Intermediate Similarity NPD9269 Phase 2
0.7338 Intermediate Similarity NPD3018 Phase 2
0.7308 Intermediate Similarity NPD3268 Approved
0.7299 Intermediate Similarity NPD5242 Approved
0.7293 Intermediate Similarity NPD8434 Phase 2
0.729 Intermediate Similarity NPD4908 Phase 1
0.7285 Intermediate Similarity NPD422 Phase 1
0.7278 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD2798 Approved
0.7273 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD6233 Phase 2
0.7258 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.725 Intermediate Similarity NPD7033 Discontinued
0.7239 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7237 Intermediate Similarity NPD9717 Approved
0.7234 Intermediate Similarity NPD6776 Approved
0.7234 Intermediate Similarity NPD6782 Approved
0.7234 Intermediate Similarity NPD6780 Approved
0.7234 Intermediate Similarity NPD6777 Approved
0.7234 Intermediate Similarity NPD6781 Approved
0.7234 Intermediate Similarity NPD6778 Approved
0.7234 Intermediate Similarity NPD6779 Approved
0.7222 Intermediate Similarity NPD8312 Approved
0.7222 Intermediate Similarity NPD8313 Approved
0.7219 Intermediate Similarity NPD6386 Approved
0.7219 Intermediate Similarity NPD6385 Approved
0.7212 Intermediate Similarity NPD4357 Discontinued
0.7208 Intermediate Similarity NPD2797 Approved
0.7197 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7193 Intermediate Similarity NPD5353 Approved
0.719 Intermediate Similarity NPD2983 Phase 2
0.719 Intermediate Similarity NPD2982 Phase 2
0.7181 Intermediate Similarity NPD5536 Phase 2
0.7178 Intermediate Similarity NPD2654 Approved
0.7171 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD1610 Phase 2
0.7159 Intermediate Similarity NPD2403 Approved
0.7151 Intermediate Similarity NPD4363 Phase 3
0.7151 Intermediate Similarity NPD4360 Phase 2
0.7143 Intermediate Similarity NPD5711 Approved
0.7143 Intermediate Similarity NPD4308 Phase 3
0.7143 Intermediate Similarity NPD3225 Approved
0.7143 Intermediate Similarity NPD5710 Approved
0.7124 Intermediate Similarity NPD2981 Phase 2
0.7124 Intermediate Similarity NPD1608 Approved
0.712 Intermediate Similarity NPD7435 Discontinued
0.7115 Intermediate Similarity NPD2861 Phase 2
0.7104 Intermediate Similarity NPD8150 Discontinued
0.7098 Intermediate Similarity NPD7584 Approved
0.7089 Intermediate Similarity NPD411 Approved
0.7089 Intermediate Similarity NPD6798 Discontinued
0.7086 Intermediate Similarity NPD9268 Approved
0.7073 Intermediate Similarity NPD1652 Phase 2
0.7072 Intermediate Similarity NPD7549 Discontinued
0.7066 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7062 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7055 Intermediate Similarity NPD7266 Discontinued
0.705 Intermediate Similarity NPD2899 Discontinued
0.7045 Intermediate Similarity NPD7229 Phase 3
0.7041 Intermediate Similarity NPD7783 Phase 2
0.7041 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD7696 Phase 3
0.7031 Intermediate Similarity NPD7698 Approved
0.7031 Intermediate Similarity NPD7697 Approved
0.7026 Intermediate Similarity NPD8151 Discontinued
0.7025 Intermediate Similarity NPD4625 Phase 3
0.7024 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7021 Intermediate Similarity NPD4361 Phase 2
0.7021 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7013 Intermediate Similarity NPD1481 Phase 2
0.7007 Intermediate Similarity NPD228 Approved
0.6995 Remote Similarity NPD7870 Phase 2
0.6995 Remote Similarity NPD7871 Phase 2
0.6994 Remote Similarity NPD4288 Approved
0.6987 Remote Similarity NPD1470 Approved
0.6987 Remote Similarity NPD3266 Approved
0.6987 Remote Similarity NPD3267 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data