Structure

Physi-Chem Properties

Molecular Weight:  512.09
Volume:  486.712
LogP:  5.816
LogD:  2.397
LogS:  -3.638
# Rotatable Bonds:  6
TPSA:  142.75
# H-Bond Aceptor:  9
# H-Bond Donor:  4
# Rings:  4
# Heavy Atoms:  10

MedChem Properties

QED Drug-Likeness Score:  0.095
Synthetic Accessibility Score:  3.441
Fsp3:  0.154
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.337
MDCK Permeability:  1.5796755178598687e-05
Pgp-inhibitor:  0.336
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.831
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  0.002

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.002
Plasma Protein Binding (PPB):  91.35071563720703%
Volume Distribution (VD):  0.603
Pgp-substrate:  13.356285095214844%

ADMET: Metabolism

CYP1A2-inhibitor:  0.558
CYP1A2-substrate:  0.627
CYP2C19-inhibitor:  0.211
CYP2C19-substrate:  0.059
CYP2C9-inhibitor:  0.826
CYP2C9-substrate:  0.688
CYP2D6-inhibitor:  0.023
CYP2D6-substrate:  0.145
CYP3A4-inhibitor:  0.061
CYP3A4-substrate:  0.068

ADMET: Excretion

Clearance (CL):  1.259
Half-life (T1/2):  0.428

ADMET: Toxicity

hERG Blockers:  0.001
Human Hepatotoxicity (H-HT):  0.018
Drug-inuced Liver Injury (DILI):  0.952
AMES Toxicity:  0.252
Rat Oral Acute Toxicity:  0.079
Maximum Recommended Daily Dose:  0.869
Skin Sensitization:  0.74
Carcinogencity:  0.029
Eye Corrosion:  0.003
Eye Irritation:  0.883
Respiratory Toxicity:  0.142

Download Data

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  Natural Product: NPC316091

Natural Product ID:  NPC316091
Common Name*:   Chlorocyclinone B
IUPAC Name:   methyl 9-(1-acetyloxyethyl)-2-chloro-6,8-dihydroxy-1-methoxy-3-methyl-7,12-dioxobenzo[a]anthracene-10-carboxylate
Synonyms:   chlorocyclinone B
Standard InCHIKey:  MFLXCCWOEBQIHW-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C26H21ClO9/c1-9-6-12-7-15(29)19-20(17(12)25(34-4)21(9)27)22(30)13-8-14(26(33)35-5)16(10(2)36-11(3)28)23(31)18(13)24(19)32/h6-8,10,29,31H,1-5H3
SMILES:  Cc1cc2cc(c3c(c2c(c1Cl)OC)C(=O)c1cc(c(C(C)OC(=O)C)c(c1C3=O)O)C(=O)OC)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL254814
PubChem CID:   24762580
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003415] Angucyclines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344559]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10344578]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10348041]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10604756]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10695669]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10724004]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10994816]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11099231]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11132958]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11374972]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[11473415]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14738393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Australian n.a. PMID[15497950]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15813185]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844966]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15974616]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16180833]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[1666120]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724845]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16830891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16872146]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17125235]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17315965]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17551212]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17608531]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17844998]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17887721]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17917237]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18044841]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Indonesian n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18081255]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18205372]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. Northwest Territories, Canada 1995 PMID[18327911]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18666798]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[18776684]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19007176]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19129624]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19191549]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19856955]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19883065]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20092333]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20545334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[20836523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028889]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21028891]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21090727]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21314175]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[21639131]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21728289]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21751787]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21807523]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21873059]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. latex n.a. PMID[21879726]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[22145663]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22574670]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22583058]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22591466]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22758660]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[22775474]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23387796]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23662937]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24592993]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24754815]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24878306]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24964393]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25211234]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25455147]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25495422]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25537064]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25918793]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25934225]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26035239]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26465675]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26798949]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[26905826]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31013087]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31298537]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[31894983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32298122]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8501018]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[8784423]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931733]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8982334]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031666]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9031676]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066767]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9066768]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9186568]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[9531983]
NPO30376 Streptomyces sp. Species Streptomycetaceae Bacteria n.a. mycelium n.a. PMID[9711246]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens IC50 = 100.0 nM PMID[570255]
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens EC50 = 160.0 nM PMID[570255]
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens IC50 = 1400.0 nM PMID[570255]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC316091 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9769 High Similarity NPC313386
0.9661 High Similarity NPC313541
0.9649 High Similarity NPC306240
0.8966 High Similarity NPC470562
0.8914 High Similarity NPC470560
0.8857 High Similarity NPC470565
0.8708 High Similarity NPC264922
0.8701 High Similarity NPC474857
0.8678 High Similarity NPC470563
0.8644 High Similarity NPC277865
0.8621 High Similarity NPC470561
0.8579 High Similarity NPC191606
0.8547 High Similarity NPC470422
0.8531 High Similarity NPC472032
0.8516 High Similarity NPC151292
0.8391 Intermediate Similarity NPC197326
0.8371 Intermediate Similarity NPC477835
0.8343 Intermediate Similarity NPC470559
0.8287 Intermediate Similarity NPC477836
0.8286 Intermediate Similarity NPC263483
0.8258 Intermediate Similarity NPC470081
0.8251 Intermediate Similarity NPC45072
0.8249 Intermediate Similarity NPC298401
0.8239 Intermediate Similarity NPC324736
0.8229 Intermediate Similarity NPC470564
0.8212 Intermediate Similarity NPC58653
0.8212 Intermediate Similarity NPC173352
0.8202 Intermediate Similarity NPC474096
0.8202 Intermediate Similarity NPC473696
0.8187 Intermediate Similarity NPC473113
0.8171 Intermediate Similarity NPC66508
0.8171 Intermediate Similarity NPC66029
0.8171 Intermediate Similarity NPC226656
0.8167 Intermediate Similarity NPC28669
0.815 Intermediate Similarity NPC205766
0.8142 Intermediate Similarity NPC472054
0.8135 Intermediate Similarity NPC154720
0.8115 Intermediate Similarity NPC214901
0.809 Intermediate Similarity NPC472052
0.809 Intermediate Similarity NPC472060
0.809 Intermediate Similarity NPC470342
0.8081 Intermediate Similarity NPC119767
0.8079 Intermediate Similarity NPC472404
0.8066 Intermediate Similarity NPC474061
0.8063 Intermediate Similarity NPC221185
0.8063 Intermediate Similarity NPC220369
0.8046 Intermediate Similarity NPC470568
0.8045 Intermediate Similarity NPC472261
0.8031 Intermediate Similarity NPC198163
0.8023 Intermediate Similarity NPC474360
0.8023 Intermediate Similarity NPC147250
0.8023 Intermediate Similarity NPC146211
0.8022 Intermediate Similarity NPC324522
0.8022 Intermediate Similarity NPC105414
0.8022 Intermediate Similarity NPC470341
0.8022 Intermediate Similarity NPC472058
0.8022 Intermediate Similarity NPC76647
0.8022 Intermediate Similarity NPC234497
0.8021 Intermediate Similarity NPC247104
0.8011 Intermediate Similarity NPC68850
0.8 Intermediate Similarity NPC470569
0.7989 Intermediate Similarity NPC284495
0.7978 Intermediate Similarity NPC317580
0.7967 Intermediate Similarity NPC30027
0.7966 Intermediate Similarity NPC318270
0.7958 Intermediate Similarity NPC470100
0.7958 Intermediate Similarity NPC470099
0.7955 Intermediate Similarity NPC154683
0.7955 Intermediate Similarity NPC40356
0.7947 Intermediate Similarity NPC474499
0.7944 Intermediate Similarity NPC472405
0.7943 Intermediate Similarity NPC147735
0.7937 Intermediate Similarity NPC99937
0.7933 Intermediate Similarity NPC326084
0.7931 Intermediate Similarity NPC2569
0.7931 Intermediate Similarity NPC172329
0.7921 Intermediate Similarity NPC474861
0.7919 Intermediate Similarity NPC314437
0.7914 Intermediate Similarity NPC207467
0.7914 Intermediate Similarity NPC471802
0.7912 Intermediate Similarity NPC469664
0.791 Intermediate Similarity NPC208806
0.791 Intermediate Similarity NPC214632
0.7908 Intermediate Similarity NPC108744
0.7903 Intermediate Similarity NPC68381
0.7903 Intermediate Similarity NPC477568
0.7901 Intermediate Similarity NPC15374
0.7889 Intermediate Similarity NPC475449
0.7889 Intermediate Similarity NPC476506
0.7889 Intermediate Similarity NPC186325
0.7887 Intermediate Similarity NPC48822
0.7877 Intermediate Similarity NPC67197
0.7874 Intermediate Similarity NPC118027
0.7874 Intermediate Similarity NPC289042
0.7874 Intermediate Similarity NPC190648
0.7874 Intermediate Similarity NPC245584
0.7874 Intermediate Similarity NPC56433
0.7874 Intermediate Similarity NPC312929
0.7874 Intermediate Similarity NPC478018
0.7874 Intermediate Similarity NPC126767
0.7872 Intermediate Similarity NPC153578
0.7872 Intermediate Similarity NPC277710
0.7872 Intermediate Similarity NPC299149
0.7872 Intermediate Similarity NPC473785
0.7872 Intermediate Similarity NPC114257
0.7853 Intermediate Similarity NPC175978
0.7849 Intermediate Similarity NPC85368
0.7849 Intermediate Similarity NPC66593
0.7846 Intermediate Similarity NPC193676
0.7845 Intermediate Similarity NPC18380
0.7845 Intermediate Similarity NPC189552
0.7845 Intermediate Similarity NPC273467
0.7841 Intermediate Similarity NPC294646
0.7841 Intermediate Similarity NPC315520
0.7841 Intermediate Similarity NPC255641
0.7841 Intermediate Similarity NPC290954
0.7841 Intermediate Similarity NPC119929
0.7833 Intermediate Similarity NPC177650
0.7831 Intermediate Similarity NPC315221
0.7826 Intermediate Similarity NPC473094
0.7816 Intermediate Similarity NPC470570
0.7812 Intermediate Similarity NPC471804
0.7812 Intermediate Similarity NPC471812
0.7812 Intermediate Similarity NPC471803
0.7809 Intermediate Similarity NPC182921
0.7809 Intermediate Similarity NPC470408
0.7809 Intermediate Similarity NPC477691
0.7809 Intermediate Similarity NPC474824
0.7809 Intermediate Similarity NPC218870
0.7807 Intermediate Similarity NPC477991
0.7807 Intermediate Similarity NPC474345
0.7807 Intermediate Similarity NPC477992
0.7802 Intermediate Similarity NPC315772
0.7797 Intermediate Similarity NPC133856
0.7797 Intermediate Similarity NPC72958
0.7797 Intermediate Similarity NPC232645
0.7797 Intermediate Similarity NPC474417
0.7797 Intermediate Similarity NPC149526
0.7796 Intermediate Similarity NPC76128
0.7796 Intermediate Similarity NPC5029
0.7796 Intermediate Similarity NPC271385
0.7796 Intermediate Similarity NPC111536
0.7796 Intermediate Similarity NPC188618
0.7796 Intermediate Similarity NPC30432
0.7791 Intermediate Similarity NPC69755
0.779 Intermediate Similarity NPC472055
0.779 Intermediate Similarity NPC292863
0.779 Intermediate Similarity NPC312993
0.779 Intermediate Similarity NPC143050
0.779 Intermediate Similarity NPC184326
0.7789 Intermediate Similarity NPC313452
0.7784 Intermediate Similarity NPC99613
0.7784 Intermediate Similarity NPC49487
0.7784 Intermediate Similarity NPC473095
0.7784 Intermediate Similarity NPC473096
0.7778 Intermediate Similarity NPC474637
0.7778 Intermediate Similarity NPC201127
0.7778 Intermediate Similarity NPC471801
0.7772 Intermediate Similarity NPC125465
0.7772 Intermediate Similarity NPC39409
0.7771 Intermediate Similarity NPC34802
0.7765 Intermediate Similarity NPC3898
0.7765 Intermediate Similarity NPC89625
0.7765 Intermediate Similarity NPC149618
0.776 Intermediate Similarity NPC105591
0.7759 Intermediate Similarity NPC34482
0.7759 Intermediate Similarity NPC478019
0.7754 Intermediate Similarity NPC203751
0.7754 Intermediate Similarity NPC470333
0.7754 Intermediate Similarity NPC229051
0.7754 Intermediate Similarity NPC131862
0.7753 Intermediate Similarity NPC273483
0.7753 Intermediate Similarity NPC87708
0.7753 Intermediate Similarity NPC477690
0.7753 Intermediate Similarity NPC217447
0.7747 Intermediate Similarity NPC24761
0.7747 Intermediate Similarity NPC137232
0.7746 Intermediate Similarity NPC53016
0.7742 Intermediate Similarity NPC477571
0.7742 Intermediate Similarity NPC298778
0.7742 Intermediate Similarity NPC477573
0.7742 Intermediate Similarity NPC313304
0.7742 Intermediate Similarity NPC474004
0.7742 Intermediate Similarity NPC477572
0.774 Intermediate Similarity NPC474660
0.774 Intermediate Similarity NPC477914
0.774 Intermediate Similarity NPC473466
0.7737 Intermediate Similarity NPC477860
0.7737 Intermediate Similarity NPC475161
0.7737 Intermediate Similarity NPC265795
0.7737 Intermediate Similarity NPC208069
0.7735 Intermediate Similarity NPC470339
0.7735 Intermediate Similarity NPC51760
0.7735 Intermediate Similarity NPC195167
0.7732 Intermediate Similarity NPC471806
0.7732 Intermediate Similarity NPC471807
0.7732 Intermediate Similarity NPC471810
0.773 Intermediate Similarity NPC107009
0.7727 Intermediate Similarity NPC153417
0.7725 Intermediate Similarity NPC28160

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC316091 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7944 Intermediate Similarity NPD6959 Discontinued
0.7901 Intermediate Similarity NPD6232 Discontinued
0.7886 Intermediate Similarity NPD3226 Approved
0.7869 Intermediate Similarity NPD7473 Discontinued
0.7717 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD7411 Suspended
0.7611 Intermediate Similarity NPD7819 Suspended
0.7577 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7569 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7565 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7557 Intermediate Similarity NPD2532 Approved
0.7557 Intermediate Similarity NPD2533 Approved
0.7557 Intermediate Similarity NPD2534 Approved
0.75 Intermediate Similarity NPD5844 Phase 1
0.7471 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7432 Intermediate Similarity NPD7768 Phase 2
0.7401 Intermediate Similarity NPD7390 Discontinued
0.7399 Intermediate Similarity NPD5405 Approved
0.7399 Intermediate Similarity NPD5408 Approved
0.7399 Intermediate Similarity NPD5406 Approved
0.7399 Intermediate Similarity NPD5404 Approved
0.7396 Intermediate Similarity NPD8313 Approved
0.7396 Intermediate Similarity NPD8312 Approved
0.7348 Intermediate Similarity NPD4380 Phase 2
0.7337 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD2935 Discontinued
0.7297 Intermediate Similarity NPD3749 Approved
0.7297 Intermediate Similarity NPD7075 Discontinued
0.7293 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD8438 Clinical (unspecified phase)
0.7282 Intermediate Similarity NPD8151 Discontinued
0.7263 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7257 Intermediate Similarity NPD2346 Discontinued
0.7249 Intermediate Similarity NPD2403 Approved
0.7241 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7238 Intermediate Similarity NPD2370 Clinical (unspecified phase)
0.7232 Intermediate Similarity NPD7003 Approved
0.7228 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7216 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7206 Intermediate Similarity NPD7435 Discontinued
0.7202 Intermediate Similarity NPD6559 Discontinued
0.7167 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.715 Intermediate Similarity NPD4363 Phase 3
0.715 Intermediate Similarity NPD4360 Phase 2
0.7143 Intermediate Similarity NPD6776 Approved
0.7143 Intermediate Similarity NPD6782 Approved
0.7143 Intermediate Similarity NPD6780 Approved
0.7143 Intermediate Similarity NPD6779 Approved
0.7143 Intermediate Similarity NPD6778 Approved
0.7143 Intermediate Similarity NPD6781 Approved
0.7143 Intermediate Similarity NPD6777 Approved
0.7135 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD8150 Discontinued
0.7087 Intermediate Similarity NPD7871 Phase 2
0.7087 Intermediate Similarity NPD7870 Phase 2
0.7083 Intermediate Similarity NPD7177 Discontinued
0.7081 Intermediate Similarity NPD6801 Discontinued
0.7072 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7072 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7068 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7068 Intermediate Similarity NPD6166 Phase 2
0.7068 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7062 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7053 Intermediate Similarity NPD5710 Approved
0.7053 Intermediate Similarity NPD5711 Approved
0.7045 Intermediate Similarity NPD1510 Phase 2
0.7039 Intermediate Similarity NPD7696 Phase 3
0.7039 Intermediate Similarity NPD7698 Approved
0.7039 Intermediate Similarity NPD3750 Approved
0.7039 Intermediate Similarity NPD7697 Approved
0.7029 Intermediate Similarity NPD1607 Approved
0.7022 Intermediate Similarity NPD1549 Phase 2
0.7021 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD7458 Discontinued
0.7 Intermediate Similarity NPD7874 Approved
0.7 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.6995 Remote Similarity NPD7893 Clinical (unspecified phase)
0.6989 Remote Similarity NPD1934 Approved
0.6973 Remote Similarity NPD6599 Discontinued
0.6966 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6966 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6952 Remote Similarity NPD1465 Phase 2
0.6949 Remote Similarity NPD2799 Discontinued
0.6947 Remote Similarity NPD5494 Approved
0.6944 Remote Similarity NPD4628 Phase 3
0.6915 Remote Similarity NPD5402 Approved
0.6915 Remote Similarity NPD3817 Phase 2
0.6914 Remote Similarity NPD1240 Approved
0.691 Remote Similarity NPD2796 Approved
0.6907 Remote Similarity NPD3818 Discontinued
0.6906 Remote Similarity NPD3887 Approved
0.6905 Remote Similarity NPD7701 Phase 2
0.6897 Remote Similarity NPD6534 Approved
0.6897 Remote Similarity NPD6535 Approved
0.6888 Remote Similarity NPD5953 Discontinued
0.6887 Remote Similarity NPD7783 Phase 2
0.6887 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6885 Remote Similarity NPD1578 Phase 2
0.6872 Remote Similarity NPD2344 Approved
0.6872 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6863 Remote Similarity NPD4361 Phase 2
0.6863 Remote Similarity NPD4362 Clinical (unspecified phase)
0.6862 Remote Similarity NPD2801 Approved
0.6848 Remote Similarity NPD6273 Approved
0.6845 Remote Similarity NPD8285 Discontinued
0.6842 Remote Similarity NPD8319 Approved
0.6842 Remote Similarity NPD8320 Phase 1
0.6837 Remote Similarity NPD7074 Phase 3
0.6831 Remote Similarity NPD6799 Approved
0.6831 Remote Similarity NPD7040 Clinical (unspecified phase)
0.6831 Remote Similarity NPD7041 Phase 2
0.6827 Remote Similarity NPD6823 Phase 2
0.6818 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6816 Remote Similarity NPD1551 Phase 2
0.6813 Remote Similarity NPD2354 Approved
0.6811 Remote Similarity NPD920 Approved
0.6809 Remote Similarity NPD37 Approved
0.6808 Remote Similarity NPD7801 Approved
0.6806 Remote Similarity NPD6234 Discontinued
0.6802 Remote Similarity NPD1470 Approved
0.68 Remote Similarity NPD8055 Clinical (unspecified phase)
0.68 Remote Similarity NPD3764 Approved
0.68 Remote Similarity NPD2313 Discontinued
0.6796 Remote Similarity NPD7700 Phase 2
0.6796 Remote Similarity NPD7699 Phase 2
0.6789 Remote Similarity NPD4967 Phase 2
0.6789 Remote Similarity NPD4965 Approved
0.6789 Remote Similarity NPD3882 Suspended
0.6789 Remote Similarity NPD4966 Approved
0.6788 Remote Similarity NPD7229 Phase 3
0.6786 Remote Similarity NPD7054 Approved
0.6766 Remote Similarity NPD8434 Phase 2
0.6765 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6765 Remote Similarity NPD6213 Phase 3
0.6765 Remote Similarity NPD6212 Phase 3
0.676 Remote Similarity NPD3748 Approved
0.6758 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6758 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6755 Remote Similarity NPD958 Approved
0.6751 Remote Similarity NPD7472 Approved
0.6739 Remote Similarity NPD1511 Approved
0.6737 Remote Similarity NPD2379 Clinical (unspecified phase)
0.6735 Remote Similarity NPD3751 Discontinued
0.6721 Remote Similarity NPD2309 Approved
0.672 Remote Similarity NPD5403 Approved
0.6717 Remote Similarity NPD6797 Phase 2
0.6716 Remote Similarity NPD6785 Approved
0.6716 Remote Similarity NPD6784 Approved
0.6703 Remote Similarity NPD642 Clinical (unspecified phase)
0.6703 Remote Similarity NPD1243 Approved
0.6703 Remote Similarity NPD2800 Approved
0.6701 Remote Similarity NPD7286 Phase 2
0.6685 Remote Similarity NPD2343 Clinical (unspecified phase)
0.6685 Remote Similarity NPD2353 Approved
0.6685 Remote Similarity NPD2355 Clinical (unspecified phase)
0.6684 Remote Similarity NPD8455 Phase 2
0.6684 Remote Similarity NPD957 Approved
0.6683 Remote Similarity NPD7251 Discontinued
0.6667 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1512 Approved
0.665 Remote Similarity NPD7808 Phase 3
0.665 Remote Similarity NPD7228 Approved
0.6647 Remote Similarity NPD1283 Approved
0.6631 Remote Similarity NPD6980 Clinical (unspecified phase)
0.663 Remote Similarity NPD2438 Suspended
0.6629 Remote Similarity NPD454 Approved
0.6629 Remote Similarity NPD2979 Phase 3
0.6615 Remote Similarity NPD3787 Discontinued
0.6615 Remote Similarity NPD6808 Phase 2
0.6613 Remote Similarity NPD5401 Approved
0.6611 Remote Similarity NPD4538 Approved
0.6611 Remote Similarity NPD4536 Approved
0.6611 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6611 Remote Similarity NPD4978 Clinical (unspecified phase)
0.661 Remote Similarity NPD3268 Approved
0.6595 Remote Similarity NPD643 Clinical (unspecified phase)
0.6593 Remote Similarity NPD1471 Phase 3
0.6591 Remote Similarity NPD6832 Phase 2
0.6587 Remote Similarity NPD8090 Clinical (unspecified phase)
0.6582 Remote Similarity NPD3926 Phase 2
0.6578 Remote Similarity NPD1940 Clinical (unspecified phase)
0.6573 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6571 Remote Similarity NPD7501 Clinical (unspecified phase)
0.657 Remote Similarity NPD1201 Approved
0.6564 Remote Similarity NPD1247 Approved
0.6559 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6557 Remote Similarity NPD4534 Discontinued
0.6556 Remote Similarity NPD6651 Approved
0.6548 Remote Similarity NPD5822 Clinical (unspecified phase)
0.6546 Remote Similarity NPD5537 Clinical (unspecified phase)
0.6546 Remote Similarity NPD919 Approved
0.6538 Remote Similarity NPD6099 Approved
0.6538 Remote Similarity NPD6100 Approved
0.6537 Remote Similarity NPD4287 Approved
0.6517 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6517 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6514 Remote Similarity NPD1203 Approved
0.6505 Remote Similarity NPD5058 Phase 3
0.65 Remote Similarity NPD1184 Approved
0.65 Remote Similarity NPD230 Phase 1

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data