Structure

Physi-Chem Properties

Molecular Weight:  338.15
Volume:  360.172
LogP:  5.392
LogD:  4.512
LogS:  -5.354
# Rotatable Bonds:  6
TPSA:  52.58
# H-Bond Aceptor:  4
# H-Bond Donor:  0
# Rings:  3
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.433
Synthetic Accessibility Score:  2.945
Fsp3:  0.286
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.728
MDCK Permeability:  1.7926095097209327e-05
Pgp-inhibitor:  0.135
Pgp-substrate:  0.014
Human Intestinal Absorption (HIA):  0.008
20% Bioavailability (F20%):  0.005
30% Bioavailability (F30%):  0.119

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.009
Plasma Protein Binding (PPB):  90.69125366210938%
Volume Distribution (VD):  0.784
Pgp-substrate:  8.987775802612305%

ADMET: Metabolism

CYP1A2-inhibitor:  0.985
CYP1A2-substrate:  0.201
CYP2C19-inhibitor:  0.945
CYP2C19-substrate:  0.07
CYP2C9-inhibitor:  0.849
CYP2C9-substrate:  0.735
CYP2D6-inhibitor:  0.733
CYP2D6-substrate:  0.598
CYP3A4-inhibitor:  0.669
CYP3A4-substrate:  0.133

ADMET: Excretion

Clearance (CL):  11.989
Half-life (T1/2):  0.277

ADMET: Toxicity

hERG Blockers:  0.053
Human Hepatotoxicity (H-HT):  0.882
Drug-inuced Liver Injury (DILI):  0.911
AMES Toxicity:  0.026
Rat Oral Acute Toxicity:  0.015
Maximum Recommended Daily Dose:  0.496
Skin Sensitization:  0.337
Carcinogencity:  0.318
Eye Corrosion:  0.003
Eye Irritation:  0.073
Respiratory Toxicity:  0.796

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC216092

Natural Product ID:  NPC216092
Common Name*:   9-[(2E)-3,7-Dimethylocta-2,6-Dienoxy]Furo[3,2-G]Chromen-7-One
IUPAC Name:   9-[(2E)-3,7-dimethylocta-2,6-dienoxy]furo[3,2-g]chromen-7-one
Synonyms:   8-Geranyloxy Psoralen
Standard InCHIKey:  SOVNCTNQAWWYAQ-OQLLNIDSSA-N
Standard InCHI:  InChI=1S/C21H22O4/c1-14(2)5-4-6-15(3)9-11-24-21-19-17(10-12-23-19)13-16-7-8-18(22)25-20(16)21/h5,7-10,12-13H,4,6,11H2,1-3H3/b15-9+
SMILES:  C/C(=CCOc1c2occc2cc2c1oc(=O)cc2)/CCC=C(C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1412710
PubChem CID:   5317564
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001283] Terpene lactones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1524 Rosa rugosa Species Rosaceae Eukaryota Flowers n.a. n.a. DOI[10.1016/j.foodcont.2014.02.001]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(99)00119-3]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. DOI[10.5012/bkcs.2003.24.11.1699]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[12510838]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[15646793]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[16249088]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota rhizomes n.a. n.a. PMID[18177011]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[19271742]
NPO23546 Clausena lansium Species Rutaceae Eukaryota leaves n.a. n.a. PMID[19327990]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota Flowers n.a. n.a. PMID[20467822]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[20590154]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[20973550]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. whole plant n.a. PMID[21428416]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[21657081]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Stems n.a. n.a. PMID[22372931]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[22870812]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23435948]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota flower buds n.a. n.a. PMID[24063567]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota Roots n.a. n.a. PMID[24461297]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Roots n.a. n.a. PMID[24798144]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24813739]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[25737008]
NPO26335 Carpesium abrotanoides Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26316467]
NPO23546 Clausena lansium Species Rutaceae Eukaryota Leaves n.a. n.a. PMID[26523463]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[27444348]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota Roots n.a. n.a. PMID[31464439]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[8064299]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. rhizome n.a. PMID[8064299]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Resin, Exudate, Sap n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Rhizome n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota Shoot Essent. Oil n.a. n.a. Database[FooDB]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Flower n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO163.1 Daucus carota var. sativa Varieties Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18681 Artemisia scoparia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12746 Pleurospermum rivulorum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO662 Angelica officinalis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6565 Cymbopogon goeringii Species Poaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26335 Carpesium abrotanoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO319 Citrus limon Species Rutaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO12746 Pleurospermum rivulorum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6565 Cymbopogon goeringii Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO163.1 Daucus carota var. sativa Varieties Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26335 Carpesium abrotanoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO662 Angelica officinalis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18681 Artemisia scoparia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26335 Carpesium abrotanoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18681 Artemisia scoparia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20553 Zingiber officinale Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15730 Citrus medica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29169 Origanum vulgare Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO662 Angelica officinalis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8874 Glehnia littoralis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26335 Carpesium abrotanoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1524 Rosa rugosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18681 Artemisia scoparia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23546 Clausena lansium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 31622.8 nM PMID[529303]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 19952.6 nM PMID[529303]
NPT151 Individual Protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 15848.9 nM PMID[529303]
NPT531 Individual Protein Nuclear receptor ROR-gamma Mus musculus Potency = 12589.3 nM PMID[529303]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 1258.9 nM PMID[529303]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 89125.1 nM PMID[529304]
NPT65 Cell Line HepG2 Homo sapiens Potency n.a. 17782.8 nM PMID[529304]
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 50118.7 nM PMID[529303]
NPT101 Individual Protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 15848.9 nM PMID[529304]
NPT11 Individual Protein Guanine nucleotide-binding protein G(s), subunit alpha Homo sapiens Potency n.a. 50118.7 nM PMID[529304]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 29855.4 nM PMID[529303]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 29092.9 nM PMID[529304]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 33498.3 nM PMID[529303]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 18356.4 nM PMID[529304]
NPT161 Individual Protein Rap guanine nucleotide exchange factor 4 Homo sapiens Potency n.a. 79432.8 nM PMID[529304]
NPT535 Individual Protein Parathyroid hormone receptor Homo sapiens Potency n.a. 63095.7 nM PMID[529304]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 39810.7 nM PMID[529303]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 8912.5 nM PMID[529303]
NPT792 Individual Protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 7943.3 nM PMID[529303]
NPT2 Others Unspecified Potency = 1584.9 nM PMID[529303]
NPT2 Others Unspecified Potency n.a. 29092.9 nM PMID[529304]
NPT533 Protein-Protein Interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 4466.8 nM PMID[529303]
NPT9 Individual Protein DNA polymerase eta Homo sapiens Potency n.a. 17782.8 nM PMID[529304]
NPT740 Individual Protein Beta-secretase 1 Homo sapiens IC50 = 20400.0 nM PMID[529305]
NPT740 Individual Protein Beta-secretase 1 Homo sapiens Ki = 61600.0 nM PMID[529305]
NPT740 Individual Protein Beta-secretase 1 Homo sapiens Ki = 61900.0 nM PMID[529305]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 44668.4 nM PMID[529304]
NPT2 Others Unspecified Potency n.a. 11220.2 nM PMID[529304]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 1900.0 nM PMID[529306]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 10000.0 nM PMID[529306]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC216092 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9934 High Similarity NPC243509
0.9868 High Similarity NPC33320
0.9744 High Similarity NPC155264
0.9744 High Similarity NPC193881
0.9744 High Similarity NPC67450
0.9744 High Similarity NPC210460
0.9679 High Similarity NPC173149
0.9679 High Similarity NPC179015
0.9615 High Similarity NPC179464
0.956 High Similarity NPC51404
0.9551 High Similarity NPC78612
0.9551 High Similarity NPC234536
0.9437 High Similarity NPC144288
0.9346 High Similarity NPC98028
0.9325 High Similarity NPC107244
0.9264 High Similarity NPC224165
0.9264 High Similarity NPC53917
0.9245 High Similarity NPC15819
0.9241 High Similarity NPC264293
0.9202 High Similarity NPC233956
0.9156 High Similarity NPC191104
0.9103 High Similarity NPC131725
0.9091 High Similarity NPC88445
0.908 High Similarity NPC281835
0.9026 High Similarity NPC266743
0.9006 High Similarity NPC65846
0.8994 High Similarity NPC250076
0.8974 High Similarity NPC474388
0.8974 High Similarity NPC472535
0.8974 High Similarity NPC474170
0.897 High Similarity NPC72455
0.897 High Similarity NPC62640
0.8961 High Similarity NPC304443
0.8961 High Similarity NPC74539
0.8961 High Similarity NPC117463
0.8947 High Similarity NPC51146
0.8947 High Similarity NPC166858
0.8924 High Similarity NPC250769
0.8924 High Similarity NPC295608
0.8924 High Similarity NPC471746
0.8924 High Similarity NPC278010
0.891 High Similarity NPC177839
0.8882 High Similarity NPC14822
0.8882 High Similarity NPC27220
0.8861 High Similarity NPC186507
0.8839 High Similarity NPC299923
0.8831 High Similarity NPC246903
0.8831 High Similarity NPC471590
0.8827 High Similarity NPC302741
0.882 High Similarity NPC49009
0.882 High Similarity NPC95472
0.882 High Similarity NPC239270
0.882 High Similarity NPC169
0.882 High Similarity NPC303210
0.8812 High Similarity NPC269495
0.8805 High Similarity NPC34725
0.8805 High Similarity NPC284353
0.8805 High Similarity NPC122623
0.8805 High Similarity NPC241774
0.8805 High Similarity NPC276059
0.8797 High Similarity NPC68882
0.879 High Similarity NPC5840
0.879 High Similarity NPC189270
0.8788 High Similarity NPC41853
0.878 High Similarity NPC472895
0.8774 High Similarity NPC310259
0.8773 High Similarity NPC132054
0.8758 High Similarity NPC113055
0.8758 High Similarity NPC254010
0.875 High Similarity NPC19860
0.875 High Similarity NPC262635
0.875 High Similarity NPC474983
0.875 High Similarity NPC257277
0.8742 High Similarity NPC279930
0.8742 High Similarity NPC475895
0.8742 High Similarity NPC41719
0.8727 High Similarity NPC167479
0.8726 High Similarity NPC474648
0.8712 High Similarity NPC272722
0.871 High Similarity NPC208584
0.8704 High Similarity NPC477164
0.8701 High Similarity NPC313036
0.8701 High Similarity NPC476054
0.8696 High Similarity NPC19097
0.8696 High Similarity NPC310206
0.8683 High Similarity NPC475964
0.8679 High Similarity NPC130015
0.8679 High Similarity NPC40033
0.8679 High Similarity NPC38361
0.8667 High Similarity NPC323137
0.8667 High Similarity NPC298071
0.8662 High Similarity NPC476342
0.8662 High Similarity NPC183236
0.8654 High Similarity NPC190572
0.865 High Similarity NPC34376
0.8645 High Similarity NPC293201
0.8645 High Similarity NPC113089
0.8642 High Similarity NPC15764
0.8636 High Similarity NPC185607
0.8634 High Similarity NPC155063
0.8625 High Similarity NPC473664
0.8625 High Similarity NPC189130
0.8623 High Similarity NPC131866
0.8623 High Similarity NPC190351
0.8618 High Similarity NPC253616
0.8616 High Similarity NPC473732
0.8614 High Similarity NPC241820
0.8613 High Similarity NPC73703
0.8608 High Similarity NPC69752
0.8606 High Similarity NPC187923
0.8606 High Similarity NPC279768
0.8606 High Similarity NPC36320
0.8599 High Similarity NPC470511
0.8598 High Similarity NPC475144
0.8598 High Similarity NPC193998
0.859 High Similarity NPC136278
0.8589 High Similarity NPC139876
0.8581 High Similarity NPC9966
0.8581 High Similarity NPC70853
0.858 High Similarity NPC270044
0.8571 High Similarity NPC157522
0.8571 High Similarity NPC470856
0.8571 High Similarity NPC233776
0.8562 High Similarity NPC304954
0.8562 High Similarity NPC60211
0.8562 High Similarity NPC36414
0.8562 High Similarity NPC475116
0.8553 High Similarity NPC148423
0.8553 High Similarity NPC135303
0.8553 High Similarity NPC259058
0.8553 High Similarity NPC155882
0.8553 High Similarity NPC201547
0.8553 High Similarity NPC268081
0.8545 High Similarity NPC472582
0.8544 High Similarity NPC261548
0.8538 High Similarity NPC104682
0.8537 High Similarity NPC94155
0.8537 High Similarity NPC309335
0.8537 High Similarity NPC296540
0.8528 High Similarity NPC238405
0.8528 High Similarity NPC257914
0.8528 High Similarity NPC104459
0.8526 High Similarity NPC17262
0.8521 High Similarity NPC65885
0.8519 High Similarity NPC248299
0.8516 High Similarity NPC28326
0.8516 High Similarity NPC29536
0.8509 High Similarity NPC128961
0.8509 High Similarity NPC472408
0.8506 High Similarity NPC472515
0.8506 High Similarity NPC136095
0.8503 High Similarity NPC186392
0.8503 High Similarity NPC247973
0.85 High Similarity NPC198615
0.85 High Similarity NPC236769
0.85 High Similarity NPC474663
0.8497 Intermediate Similarity NPC44573
0.8494 Intermediate Similarity NPC38914
0.8494 Intermediate Similarity NPC204088
0.8494 Intermediate Similarity NPC329215
0.8494 Intermediate Similarity NPC45449
0.8494 Intermediate Similarity NPC475369
0.8494 Intermediate Similarity NPC259007
0.8494 Intermediate Similarity NPC280893
0.8491 Intermediate Similarity NPC181250
0.8485 Intermediate Similarity NPC19948
0.8485 Intermediate Similarity NPC471745
0.8485 Intermediate Similarity NPC273021
0.8485 Intermediate Similarity NPC18284
0.8481 Intermediate Similarity NPC198427
0.8481 Intermediate Similarity NPC205522
0.8476 Intermediate Similarity NPC269906
0.8476 Intermediate Similarity NPC328102
0.8476 Intermediate Similarity NPC298093
0.8471 Intermediate Similarity NPC296575
0.8471 Intermediate Similarity NPC171656
0.8471 Intermediate Similarity NPC66804
0.8466 Intermediate Similarity NPC108456
0.8466 Intermediate Similarity NPC78071
0.8457 Intermediate Similarity NPC3273
0.8457 Intermediate Similarity NPC133392
0.8457 Intermediate Similarity NPC234255
0.8457 Intermediate Similarity NPC478238
0.8447 Intermediate Similarity NPC144162
0.8447 Intermediate Similarity NPC166201
0.8447 Intermediate Similarity NPC199773
0.8443 Intermediate Similarity NPC475214
0.8438 Intermediate Similarity NPC166753
0.8438 Intermediate Similarity NPC472406
0.8438 Intermediate Similarity NPC50728
0.8438 Intermediate Similarity NPC29056
0.8434 Intermediate Similarity NPC1706
0.8434 Intermediate Similarity NPC1755
0.8434 Intermediate Similarity NPC39305
0.8434 Intermediate Similarity NPC263092
0.8434 Intermediate Similarity NPC59295
0.8428 Intermediate Similarity NPC10304
0.8428 Intermediate Similarity NPC306788
0.8428 Intermediate Similarity NPC63256
0.8424 Intermediate Similarity NPC112418

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC216092 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9868 High Similarity NPD919 Approved
0.9241 High Similarity NPD1247 Approved
0.8961 High Similarity NPD920 Approved
0.8947 High Similarity NPD643 Clinical (unspecified phase)
0.8831 High Similarity NPD642 Clinical (unspecified phase)
0.8805 High Similarity NPD3817 Phase 2
0.875 High Similarity NPD1243 Approved
0.8634 High Similarity NPD3882 Suspended
0.8545 High Similarity NPD3926 Phase 2
0.8526 High Similarity NPD6799 Approved
0.8509 High Similarity NPD7096 Clinical (unspecified phase)
0.8476 Intermediate Similarity NPD5494 Approved
0.8447 Intermediate Similarity NPD6801 Discontinued
0.8354 Intermediate Similarity NPD7075 Discontinued
0.8323 Intermediate Similarity NPD6599 Discontinued
0.8194 Intermediate Similarity NPD2796 Approved
0.8171 Intermediate Similarity NPD7819 Suspended
0.8171 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8137 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8125 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.811 Intermediate Similarity NPD1934 Approved
0.8092 Intermediate Similarity NPD6559 Discontinued
0.807 Intermediate Similarity NPD3818 Discontinued
0.8061 Intermediate Similarity NPD2801 Approved
0.8023 Intermediate Similarity NPD5844 Phase 1
0.7963 Intermediate Similarity NPD1512 Approved
0.7953 Intermediate Similarity NPD6166 Phase 2
0.7953 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7953 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7943 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7941 Intermediate Similarity NPD6232 Discontinued
0.7939 Intermediate Similarity NPD7411 Suspended
0.7914 Intermediate Similarity NPD5403 Approved
0.7907 Intermediate Similarity NPD7473 Discontinued
0.7904 Intermediate Similarity NPD5402 Approved
0.7901 Intermediate Similarity NPD5401 Approved
0.7841 Intermediate Similarity NPD7808 Phase 3
0.784 Intermediate Similarity NPD1511 Approved
0.7829 Intermediate Similarity NPD6797 Phase 2
0.7811 Intermediate Similarity NPD3749 Approved
0.7784 Intermediate Similarity NPD7251 Discontinued
0.7771 Intermediate Similarity NPD4380 Phase 2
0.7751 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7714 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7714 Intermediate Similarity NPD7054 Approved
0.7688 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD2534 Approved
0.7683 Intermediate Similarity NPD2532 Approved
0.7683 Intermediate Similarity NPD2533 Approved
0.7673 Intermediate Similarity NPD1510 Phase 2
0.7673 Intermediate Similarity NPD3748 Approved
0.767 Intermediate Similarity NPD7472 Approved
0.767 Intermediate Similarity NPD7074 Phase 3
0.7647 Intermediate Similarity NPD7768 Phase 2
0.7644 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.764 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.764 Intermediate Similarity NPD1549 Phase 2
0.7625 Intermediate Similarity NPD1551 Phase 2
0.7613 Intermediate Similarity NPD6832 Phase 2
0.7602 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD1933 Approved
0.7595 Intermediate Similarity NPD447 Suspended
0.7593 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD1240 Approved
0.7529 Intermediate Similarity NPD1465 Phase 2
0.7528 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD2935 Discontinued
0.7516 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7473 Intermediate Similarity NPD8434 Phase 2
0.7471 Intermediate Similarity NPD7199 Phase 2
0.7469 Intermediate Similarity NPD1471 Phase 3
0.7469 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7458 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7457 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7453 Intermediate Similarity NPD2799 Discontinued
0.7439 Intermediate Similarity NPD3750 Approved
0.7438 Intermediate Similarity NPD1607 Approved
0.741 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7386 Intermediate Similarity NPD5242 Approved
0.7378 Intermediate Similarity NPD2800 Approved
0.7371 Intermediate Similarity NPD6959 Discontinued
0.7362 Intermediate Similarity NPD2344 Approved
0.736 Intermediate Similarity NPD2163 Approved
0.7345 Intermediate Similarity NPD2403 Approved
0.7345 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD5953 Discontinued
0.7333 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD4628 Phase 3
0.7296 Intermediate Similarity NPD2313 Discontinued
0.7294 Intermediate Similarity NPD3226 Approved
0.7289 Intermediate Similarity NPD3887 Approved
0.7283 Intermediate Similarity NPD5353 Approved
0.7267 Intermediate Similarity NPD230 Phase 1
0.7262 Intermediate Similarity NPD3688 Clinical (unspecified phase)
0.7262 Intermediate Similarity NPD3146 Approved
0.7249 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7232 Intermediate Similarity NPD6808 Phase 2
0.7225 Intermediate Similarity NPD4107 Approved
0.7222 Intermediate Similarity NPD7286 Phase 2
0.7209 Intermediate Similarity NPD6386 Approved
0.7209 Intermediate Similarity NPD6385 Approved
0.7205 Intermediate Similarity NPD943 Approved
0.7204 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7188 Intermediate Similarity NPD1296 Phase 2
0.7188 Intermediate Similarity NPD4482 Phase 3
0.7186 Intermediate Similarity NPD2309 Approved
0.7169 Intermediate Similarity NPD2654 Approved
0.7168 Intermediate Similarity NPD37 Approved
0.716 Intermediate Similarity NPD6355 Discontinued
0.7158 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD2346 Discontinued
0.7152 Intermediate Similarity NPD2355 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD2353 Approved
0.7152 Intermediate Similarity NPD1019 Discontinued
0.7143 Intermediate Similarity NPD4966 Approved
0.7143 Intermediate Similarity NPD4965 Approved
0.7143 Intermediate Similarity NPD4967 Phase 2
0.7135 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD7229 Phase 3
0.7135 Intermediate Similarity NPD5711 Approved
0.7135 Intermediate Similarity NPD5710 Approved
0.7128 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD9717 Approved
0.7099 Intermediate Similarity NPD4307 Phase 2
0.7089 Intermediate Similarity NPD3266 Approved
0.7089 Intermediate Similarity NPD3267 Approved
0.7089 Intermediate Similarity NPD1203 Approved
0.7081 Intermediate Similarity NPD6798 Discontinued
0.7072 Intermediate Similarity NPD3751 Discontinued
0.7069 Intermediate Similarity NPD6280 Approved
0.7069 Intermediate Similarity NPD6279 Approved
0.7062 Intermediate Similarity NPD6234 Discontinued
0.7051 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7047 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7039 Intermediate Similarity NPD3787 Discontinued
0.7035 Intermediate Similarity NPD1653 Approved
0.7032 Intermediate Similarity NPD17 Approved
0.703 Intermediate Similarity NPD7033 Discontinued
0.7024 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD5049 Phase 3
0.7012 Intermediate Similarity NPD6651 Approved
0.7011 Intermediate Similarity NPD5889 Approved
0.7011 Intermediate Similarity NPD5890 Approved
0.7 Intermediate Similarity NPD9494 Approved
0.6994 Remote Similarity NPD4060 Phase 1
0.6982 Remote Similarity NPD6190 Approved
0.6982 Remote Similarity NPD2354 Approved
0.6975 Remote Similarity NPD411 Approved
0.6975 Remote Similarity NPD3268 Approved
0.6959 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6951 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6951 Remote Similarity NPD5124 Phase 1
0.6949 Remote Similarity NPD5019 Clinical (unspecified phase)
0.6948 Remote Similarity NPD5536 Phase 2
0.6943 Remote Similarity NPD422 Phase 1
0.6937 Remote Similarity NPD2798 Approved
0.6931 Remote Similarity NPD4287 Approved
0.6928 Remote Similarity NPD4308 Phase 3
0.6928 Remote Similarity NPD651 Clinical (unspecified phase)
0.6919 Remote Similarity NPD1940 Clinical (unspecified phase)
0.6919 Remote Similarity NPD6765 Approved
0.6919 Remote Similarity NPD6764 Approved
0.6902 Remote Similarity NPD1729 Discontinued
0.6899 Remote Similarity NPD1608 Approved
0.6897 Remote Similarity NPD7458 Discontinued
0.6897 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6889 Remote Similarity NPD8127 Discontinued
0.6886 Remote Similarity NPD2438 Suspended
0.6875 Remote Similarity NPD2797 Approved
0.6857 Remote Similarity NPD6585 Discontinued
0.6852 Remote Similarity NPD1008 Clinical (unspecified phase)
0.6836 Remote Similarity NPD1006 Clinical (unspecified phase)
0.6829 Remote Similarity NPD6233 Phase 2
0.6826 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6824 Remote Similarity NPD4110 Phase 3
0.6824 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6821 Remote Similarity NPD6273 Approved
0.6818 Remote Similarity NPD6873 Phase 2
0.681 Remote Similarity NPD3027 Phase 3
0.6802 Remote Similarity NPD5006 Approved
0.6802 Remote Similarity NPD3057 Approved
0.6802 Remote Similarity NPD5005 Approved
0.6798 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6798 Remote Similarity NPD4288 Approved
0.6797 Remote Similarity NPD1241 Discontinued
0.6793 Remote Similarity NPD7228 Approved
0.6792 Remote Similarity NPD3972 Approved
0.679 Remote Similarity NPD3018 Phase 2
0.6788 Remote Similarity NPD1612 Clinical (unspecified phase)
0.6788 Remote Similarity NPD2979 Phase 3
0.6788 Remote Similarity NPD1613 Approved
0.678 Remote Similarity NPD5980 Discovery
0.6776 Remote Similarity NPD4575 Clinical (unspecified phase)
0.6772 Remote Similarity NPD6784 Approved
0.6772 Remote Similarity NPD6785 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data