Structure

Physi-Chem Properties

Molecular Weight:  416.11
Volume:  395.567
LogP:  1.46
LogD:  1.658
LogS:  -4.139
# Rotatable Bonds:  5
TPSA:  116.82
# H-Bond Aceptor:  9
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  9

MedChem Properties

QED Drug-Likeness Score:  0.605
Synthetic Accessibility Score:  3.511
Fsp3:  0.286
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.117
MDCK Permeability:  2.546914947743062e-05
Pgp-inhibitor:  0.997
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.021
20% Bioavailability (F20%):  0.006
30% Bioavailability (F30%):  0.007

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.702
Plasma Protein Binding (PPB):  71.78217315673828%
Volume Distribution (VD):  0.858
Pgp-substrate:  27.718708038330078%

ADMET: Metabolism

CYP1A2-inhibitor:  0.091
CYP1A2-substrate:  0.935
CYP2C19-inhibitor:  0.052
CYP2C19-substrate:  0.572
CYP2C9-inhibitor:  0.288
CYP2C9-substrate:  0.693
CYP2D6-inhibitor:  0.083
CYP2D6-substrate:  0.589
CYP3A4-inhibitor:  0.556
CYP3A4-substrate:  0.832

ADMET: Excretion

Clearance (CL):  5.168
Half-life (T1/2):  0.768

ADMET: Toxicity

hERG Blockers:  0.318
Human Hepatotoxicity (H-HT):  0.6
Drug-inuced Liver Injury (DILI):  0.931
AMES Toxicity:  0.1
Rat Oral Acute Toxicity:  0.393
Maximum Recommended Daily Dose:  0.223
Skin Sensitization:  0.574
Carcinogencity:  0.306
Eye Corrosion:  0.003
Eye Irritation:  0.028
Respiratory Toxicity:  0.023

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Similar NPs/Drugs  

  Natural Product: NPC205727

Natural Product ID:  NPC205727
Common Name*:   Cleomiscosin C
IUPAC Name:   (2R,3R)-3-(4-hydroxy-3,5-dimethoxyphenyl)-2-(hydroxymethyl)-5-methoxy-2,3-dihydropyrano[3,2-h][1,4]benzodioxin-9-one
Synonyms:   Cleomiscosin C
Standard InCHIKey:  GZXPCBAETDEQAX-CRAIPNDOSA-N
Standard InCHI:  InChI=1S/C21H20O9/c1-25-12-7-11(8-13(26-2)17(12)24)18-15(9-22)28-21-19-10(4-5-16(23)29-19)6-14(27-3)20(21)30-18/h4-8,15,18,22,24H,9H2,1-3H3/t15-,18-/m1/s1
SMILES:  OC[C@H]1Oc2c(O[C@@H]1c1cc(OC)c(c(c1)OC)O)c(OC)cc1c2oc(=O)cc1
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL465491
PubChem CID:   11464176
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0001392] Lignans, neolignans and related compounds
      • [CHEMONTID:0002545] Coumarinolignans

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota root bark n.a. n.a. PMID[10346965]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. root n.a. PMID[10617409]
NPO1033 Plectranthus nummularius Species Lamiaceae Eukaryota n.a. leaf n.a. PMID[11558608]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. PMID[11575966]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. Japan n.a. PMID[12542351]
NPO18398 Rhododendron collettianum Species Ericaceae Eukaryota n.a. aerial part n.a. PMID[15577244]
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16989528]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[19719093]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[21550801]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[22512738]
NPO8872 Streptomyces rishiriensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24079980]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26081757]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. aerial part n.a. PMID[27169184]
NPO10662 Scrippsiella trochoidea Species Peridiniaceae Eukaryota n.a. n.a. n.a. PMID[8021655]
NPO8872 Streptomyces rishiriensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[8931735]
NPO16693 Byrsonima crassifolia Species Malpighiaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO16693 Byrsonima crassifolia Species Malpighiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO16693 Byrsonima crassifolia Species Malpighiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO18398 Rhododendron collettianum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15167 Eichhornia crassipes Species Pontederiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30634 Acer nikoense Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9141 Epimedium wushanense Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26304 Hymenocallis littoralis Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16900 Aesculus turbinata Species Hippocastanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5895 Hibiscus taiwanensis Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29756 Aquilaria agallocha Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14297 Dioscorea gracillima Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13983 Acer maximowiczianum Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26304 Hymenocallis littoralis Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14297 Dioscorea gracillima Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7043 Fuligo candida Species Physaraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15167 Eichhornia crassipes Species Pontederiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6295 Astragalus trojanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11281 Euphorbia fortissima Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16900 Aesculus turbinata Species Hippocastanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18398 Rhododendron collettianum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5895 Hibiscus taiwanensis Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2787 Cussonia racemosa Species Araliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12265 Aquilaria agallochum Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1033 Plectranthus nummularius Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9141 Epimedium wushanense Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15954 Pyrenula japonica Species Pyrenulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29756 Aquilaria agallocha Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16900 Aesculus turbinata Species Hippocastanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14297 Dioscorea gracillima Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16326 Scopolia parviflora Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12265 Aquilaria agallochum Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9141 Epimedium wushanense Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18071 Euryops pedunculatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16210 Androcymbium palaestinum Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16092 Calocephalus knappii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12994 Choriaster granulatus Species Oreasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17917 Thamnophis sirtalis Species Colubridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17141 Lonchocarpus longistylus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14865 Vitex limonifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5016 Glossogyne tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16693 Byrsonima crassifolia Species Malpighiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14297 Dioscorea gracillima Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11755 Banisteriopsis caapi Species Malpighiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26304 Hymenocallis littoralis Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10662 Scrippsiella trochoidea Species Peridiniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16355 Phyllanthus acutifolius Species Leiothrichidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14345 Androsace septentrionalis Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16900 Aesculus turbinata Species Hippocastanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15594 Aplidiopsis confluata n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO21758 Thiocystis gelatinosa Species Chromatiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO1033 Plectranthus nummularius Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO742 Aloe saponaria Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15167 Eichhornia crassipes Species Pontederiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15954 Pyrenula japonica Species Pyrenulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17625 Colchicum hierosolymitanum Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13383 Schumanniophyton magnificum Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12630 Senecio oxyodontus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14049 Fumaria indica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16326 Scopolia parviflora Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9786 Monomeria barbata Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5895 Hibiscus taiwanensis Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9358 Pseuduvaria indochinensis Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15740 Garcinia purpurea Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12265 Aquilaria agallochum Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18398 Rhododendron collettianum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14507.1 Quercus ithaburensis subsp. macrolepis Subspecies Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7043 Fuligo candida Species Physaraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8872 Streptomyces rishiriensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO29062 Hibiscus syriacus Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16049 Cryptocarya pleurosperma Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8401 Pteris setuloso-costulata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11684 Iberis sempervirens Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17757 Plectranthus saccatus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10751 Bothriocline laxa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11153 Entada polystachya Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17600 Gnathotrichus sulcatus Species Curculionidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9141 Epimedium wushanense Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6295 Astragalus trojanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6370 Roemeria carica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17444 Gleichenia japonica Species Gleicheniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11281 Euphorbia fortissima Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12341 Axinyssa pitys Species Halichondriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4360 Hendersonula toruloidea n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO11280 Aphanoascus terreus Species Onygenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2787 Cussonia racemosa Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13842 Nepeta caesarea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1219 Theobroma speciosum Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14001 Ceroplastes pseudoceriferus Species Coccidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO619 Ankistrodesmus braunii Species Selenastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13983 Acer maximowiczianum Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15449 Echium rubrum Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1084 Subcellular Liver microsomes Rattus norvegicus IC50 = 0.7 ug.mL-1 PMID[510603]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC205727 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC294522
1.0 High Similarity NPC120426
1.0 High Similarity NPC21184
0.993 High Similarity NPC30688
0.993 High Similarity NPC176903
0.9859 High Similarity NPC476348
0.9859 High Similarity NPC187398
0.9789 High Similarity NPC15577
0.9789 High Similarity NPC476347
0.9724 High Similarity NPC264875
0.9724 High Similarity NPC120774
0.9724 High Similarity NPC163598
0.9392 High Similarity NPC150442
0.9388 High Similarity NPC213197
0.9371 High Similarity NPC91492
0.9371 High Similarity NPC34245
0.9371 High Similarity NPC7439
0.9371 High Similarity NPC110067
0.9371 High Similarity NPC256555
0.9329 High Similarity NPC8712
0.9324 High Similarity NPC176186
0.9324 High Similarity NPC53587
0.9324 High Similarity NPC169404
0.931 High Similarity NPC268515
0.931 High Similarity NPC40222
0.9252 High Similarity NPC212670
0.9252 High Similarity NPC206264
0.9252 High Similarity NPC313334
0.9247 High Similarity NPC231149
0.9231 High Similarity NPC300611
0.9225 High Similarity NPC43500
0.9225 High Similarity NPC13067
0.9225 High Similarity NPC164148
0.9195 High Similarity NPC215060
0.9195 High Similarity NPC476352
0.9189 High Similarity NPC114740
0.9184 High Similarity NPC93924
0.9184 High Similarity NPC96294
0.9184 High Similarity NPC48366
0.9184 High Similarity NPC478237
0.9184 High Similarity NPC139839
0.9178 High Similarity NPC205361
0.9167 High Similarity NPC278469
0.9167 High Similarity NPC193722
0.9155 High Similarity NPC126206
0.9155 High Similarity NPC139548
0.9155 High Similarity NPC52086
0.9155 High Similarity NPC95162
0.9155 High Similarity NPC76336
0.9155 High Similarity NPC148835
0.9155 High Similarity NPC20511
0.9122 High Similarity NPC475250
0.9122 High Similarity NPC106138
0.9116 High Similarity NPC41844
0.9116 High Similarity NPC178129
0.9103 High Similarity NPC138212
0.9097 High Similarity NPC83375
0.9097 High Similarity NPC224876
0.9085 High Similarity NPC471665
0.9085 High Similarity NPC471664
0.9085 High Similarity NPC126682
0.9085 High Similarity NPC82271
0.9079 High Similarity NPC284810
0.9048 High Similarity NPC199928
0.9041 High Similarity NPC185127
0.9041 High Similarity NPC471763
0.9038 High Similarity NPC142614
0.9028 High Similarity NPC267291
0.9021 High Similarity NPC38874
0.9021 High Similarity NPC103976
0.9021 High Similarity NPC102904
0.9021 High Similarity NPC176051
0.9021 High Similarity NPC474886
0.9021 High Similarity NPC107551
0.9021 High Similarity NPC326797
0.9021 High Similarity NPC474282
0.9014 High Similarity NPC472337
0.8986 High Similarity NPC52740
0.8966 High Similarity NPC471389
0.8951 High Similarity NPC472336
0.8951 High Similarity NPC471719
0.8951 High Similarity NPC286843
0.8951 High Similarity NPC306441
0.8951 High Similarity NPC16435
0.8951 High Similarity NPC472334
0.8947 High Similarity NPC268484
0.8944 High Similarity NPC135127
0.8944 High Similarity NPC309953
0.8944 High Similarity NPC170694
0.8944 High Similarity NPC310854
0.8944 High Similarity NPC92830
0.8944 High Similarity NPC474600
0.8944 High Similarity NPC111635
0.8912 High Similarity NPC292443
0.8912 High Similarity NPC232228
0.8904 High Similarity NPC469564
0.8889 High Similarity NPC276490
0.8889 High Similarity NPC211549
0.8889 High Similarity NPC142479
0.8889 High Similarity NPC155015
0.8882 High Similarity NPC223720
0.8882 High Similarity NPC149735
0.8881 High Similarity NPC474206
0.8881 High Similarity NPC224941
0.8881 High Similarity NPC234865
0.8881 High Similarity NPC121812
0.8881 High Similarity NPC112939
0.8881 High Similarity NPC470356
0.8881 High Similarity NPC94750
0.8881 High Similarity NPC234333
0.8881 High Similarity NPC311430
0.8881 High Similarity NPC61946
0.8881 High Similarity NPC112246
0.8881 High Similarity NPC260898
0.8881 High Similarity NPC47398
0.8873 High Similarity NPC229442
0.8873 High Similarity NPC36437
0.8873 High Similarity NPC241341
0.8873 High Similarity NPC233018
0.8873 High Similarity NPC277021
0.8873 High Similarity NPC168059
0.8873 High Similarity NPC26673
0.8859 High Similarity NPC97937
0.8859 High Similarity NPC275125
0.8859 High Similarity NPC227902
0.8859 High Similarity NPC170239
0.8851 High Similarity NPC473909
0.8851 High Similarity NPC143120
0.8851 High Similarity NPC274960
0.8851 High Similarity NPC226722
0.8844 High Similarity NPC236419
0.8844 High Similarity NPC478239
0.8844 High Similarity NPC230157
0.8844 High Similarity NPC6568
0.8844 High Similarity NPC252169
0.8836 High Similarity NPC472520
0.8836 High Similarity NPC279851
0.8828 High Similarity NPC245207
0.8828 High Similarity NPC127218
0.8828 High Similarity NPC25966
0.8828 High Similarity NPC319647
0.8828 High Similarity NPC471388
0.8824 High Similarity NPC7178
0.8824 High Similarity NPC62903
0.8819 High Similarity NPC227503
0.8819 High Similarity NPC302701
0.8819 High Similarity NPC474639
0.8819 High Similarity NPC230734
0.8819 High Similarity NPC269091
0.8811 High Similarity NPC309744
0.8811 High Similarity NPC106215
0.8803 High Similarity NPC5423
0.8803 High Similarity NPC35932
0.8803 High Similarity NPC7903
0.8803 High Similarity NPC160991
0.8803 High Similarity NPC137669
0.8803 High Similarity NPC137949
0.8803 High Similarity NPC184447
0.8803 High Similarity NPC16208
0.8803 High Similarity NPC319969
0.8803 High Similarity NPC245120
0.88 High Similarity NPC175976
0.8792 High Similarity NPC125755
0.8784 High Similarity NPC471824
0.8782 High Similarity NPC53889
0.8782 High Similarity NPC24164
0.8776 High Similarity NPC140502
0.8776 High Similarity NPC157816
0.8776 High Similarity NPC107161
0.8776 High Similarity NPC145319
0.8776 High Similarity NPC475084
0.8774 High Similarity NPC125495
0.8758 High Similarity NPC476154
0.8758 High Similarity NPC474656
0.875 High Similarity NPC214729
0.875 High Similarity NPC151224
0.875 High Similarity NPC195022
0.875 High Similarity NPC164787
0.8742 High Similarity NPC471823
0.8742 High Similarity NPC113790
0.8741 High Similarity NPC11060
0.8741 High Similarity NPC475840
0.8741 High Similarity NPC474810
0.8741 High Similarity NPC263064
0.8733 High Similarity NPC16269
0.8733 High Similarity NPC21776
0.8732 High Similarity NPC472597
0.8732 High Similarity NPC73738
0.8725 High Similarity NPC476382
0.8725 High Similarity NPC163898
0.8725 High Similarity NPC34927
0.8725 High Similarity NPC469701
0.8725 High Similarity NPC476450
0.8725 High Similarity NPC125617
0.8725 High Similarity NPC252292
0.8725 High Similarity NPC34587
0.8725 High Similarity NPC100998
0.8725 High Similarity NPC277867
0.8725 High Similarity NPC161700
0.8725 High Similarity NPC475096

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC205727 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9252 High Similarity NPD1653 Approved
0.8671 High Similarity NPD1613 Approved
0.8671 High Similarity NPD1612 Clinical (unspecified phase)
0.859 High Similarity NPD4868 Clinical (unspecified phase)
0.8462 Intermediate Similarity NPD3027 Phase 3
0.8424 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8405 Intermediate Similarity NPD5844 Phase 1
0.8392 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.8344 Intermediate Similarity NPD2801 Approved
0.8322 Intermediate Similarity NPD7266 Discontinued
0.8322 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.8293 Intermediate Similarity NPD7054 Approved
0.828 Intermediate Similarity NPD1934 Approved
0.8242 Intermediate Similarity NPD7472 Approved
0.8221 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8221 Intermediate Similarity NPD6166 Phase 2
0.8221 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.8212 Intermediate Similarity NPD1652 Phase 2
0.8176 Intermediate Similarity NPD3817 Phase 2
0.8176 Intermediate Similarity NPD5402 Approved
0.8133 Intermediate Similarity NPD7074 Phase 3
0.8121 Intermediate Similarity NPD3818 Discontinued
0.8113 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8113 Intermediate Similarity NPD1465 Phase 2
0.8108 Intermediate Similarity NPD5124 Phase 1
0.8108 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.8095 Intermediate Similarity NPD7549 Discontinued
0.8084 Intermediate Similarity NPD6797 Phase 2
0.8084 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8036 Intermediate Similarity NPD7251 Discontinued
0.8028 Intermediate Similarity NPD422 Phase 1
0.7988 Intermediate Similarity NPD7808 Phase 3
0.7963 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7925 Intermediate Similarity NPD4380 Phase 2
0.7901 Intermediate Similarity NPD3882 Suspended
0.7891 Intermediate Similarity NPD4908 Phase 1
0.7885 Intermediate Similarity NPD1511 Approved
0.7871 Intermediate Similarity NPD6190 Approved
0.7853 Intermediate Similarity NPD7075 Discontinued
0.7848 Intermediate Similarity NPD5403 Approved
0.7805 Intermediate Similarity NPD6234 Discontinued
0.7798 Intermediate Similarity NPD7228 Approved
0.7785 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7785 Intermediate Similarity NPD1512 Approved
0.7758 Intermediate Similarity NPD5494 Approved
0.7746 Intermediate Similarity NPD1548 Phase 1
0.7722 Intermediate Similarity NPD5401 Approved
0.7716 Intermediate Similarity NPD6801 Discontinued
0.7716 Intermediate Similarity NPD37 Approved
0.7711 Intermediate Similarity NPD7199 Phase 2
0.7703 Intermediate Similarity NPD2861 Phase 2
0.7692 Intermediate Similarity NPD3750 Approved
0.7683 Intermediate Similarity NPD4965 Approved
0.7683 Intermediate Similarity NPD4967 Phase 2
0.7683 Intermediate Similarity NPD4966 Approved
0.7673 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7671 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7669 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7655 Intermediate Similarity NPD1610 Phase 2
0.7616 Intermediate Similarity NPD6559 Discontinued
0.7586 Intermediate Similarity NPD3496 Discontinued
0.7584 Intermediate Similarity NPD3018 Phase 2
0.7566 Intermediate Similarity NPD4060 Phase 1
0.7561 Intermediate Similarity NPD7819 Suspended
0.756 Intermediate Similarity NPD6232 Discontinued
0.7547 Intermediate Similarity NPD6799 Approved
0.7546 Intermediate Similarity NPD7411 Suspended
0.7544 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7543 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD230 Phase 1
0.7515 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7514 Intermediate Similarity NPD7685 Pre-registration
0.75 Intermediate Similarity NPD6233 Phase 2
0.75 Intermediate Similarity NPD3225 Approved
0.75 Intermediate Similarity NPD8127 Discontinued
0.7468 Intermediate Similarity NPD4628 Phase 3
0.7468 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7452 Intermediate Similarity NPD1549 Phase 2
0.7436 Intermediate Similarity NPD2935 Discontinued
0.7432 Intermediate Similarity NPD2982 Phase 2
0.7432 Intermediate Similarity NPD2983 Phase 2
0.7427 Intermediate Similarity NPD7473 Discontinued
0.7416 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7415 Intermediate Similarity NPD1091 Approved
0.7407 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD6674 Discontinued
0.7403 Intermediate Similarity NPD447 Suspended
0.7403 Intermediate Similarity NPD4340 Discontinued
0.7391 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7384 Intermediate Similarity NPD3751 Discontinued
0.7372 Intermediate Similarity NPD3748 Approved
0.7368 Intermediate Similarity NPD4625 Phase 3
0.7365 Intermediate Similarity NPD2981 Phase 2
0.7365 Intermediate Similarity NPD7768 Phase 2
0.7333 Intermediate Similarity NPD2797 Approved
0.7329 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD1551 Phase 2
0.7325 Intermediate Similarity NPD2796 Approved
0.732 Intermediate Similarity NPD6798 Discontinued
0.732 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD4749 Approved
0.7314 Intermediate Similarity NPD7240 Approved
0.7305 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7296 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7284 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7284 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD919 Approved
0.7273 Intermediate Similarity NPD6599 Discontinued
0.7267 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD1510 Phase 2
0.7261 Intermediate Similarity NPD7033 Discontinued
0.7256 Intermediate Similarity NPD3687 Approved
0.7256 Intermediate Similarity NPD3686 Approved
0.7254 Intermediate Similarity NPD228 Approved
0.7251 Intermediate Similarity NPD3787 Discontinued
0.7246 Intermediate Similarity NPD8455 Phase 2
0.7239 Intermediate Similarity NPD7314 Clinical (unspecified phase)
0.7233 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD7212 Phase 2
0.7222 Intermediate Similarity NPD4357 Discontinued
0.7222 Intermediate Similarity NPD7213 Phase 3
0.7208 Intermediate Similarity NPD3268 Approved
0.7197 Intermediate Similarity NPD7097 Phase 1
0.7193 Intermediate Similarity NPD6959 Discontinued
0.7192 Intermediate Similarity NPD5536 Phase 2
0.719 Intermediate Similarity NPD1008 Clinical (unspecified phase)
0.7188 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD6355 Discontinued
0.7179 Intermediate Similarity NPD1933 Approved
0.7178 Intermediate Similarity NPD7447 Phase 1
0.7172 Intermediate Similarity NPD6671 Approved
0.717 Intermediate Similarity NPD5762 Approved
0.717 Intermediate Similarity NPD5763 Approved
0.7143 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7095 Approved
0.7143 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD5677 Discontinued
0.7125 Intermediate Similarity NPD2424 Discontinued
0.7119 Intermediate Similarity NPD7039 Approved
0.7119 Intermediate Similarity NPD7038 Approved
0.7118 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD3749 Approved
0.7115 Intermediate Similarity NPD1558 Phase 1
0.7108 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD8158 Clinical (unspecified phase)
0.7093 Intermediate Similarity NPD1247 Approved
0.7089 Intermediate Similarity NPD4536 Approved
0.7089 Intermediate Similarity NPD4538 Approved
0.7089 Intermediate Similarity NPD4537 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD5535 Approved
0.7081 Intermediate Similarity NPD6621 Clinical (unspecified phase)
0.7078 Intermediate Similarity NPD6832 Phase 2
0.7072 Intermediate Similarity NPD6841 Approved
0.7072 Intermediate Similarity NPD6843 Phase 3
0.7072 Intermediate Similarity NPD6842 Approved
0.7066 Intermediate Similarity NPD4675 Approved
0.7066 Intermediate Similarity NPD4678 Approved
0.7063 Intermediate Similarity NPD3540 Phase 1
0.7044 Intermediate Similarity NPD4308 Phase 3
0.7039 Intermediate Similarity NPD8312 Approved
0.7039 Intermediate Similarity NPD8313 Approved
0.7037 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD4110 Phase 3
0.7034 Intermediate Similarity NPD5283 Phase 1
0.7025 Intermediate Similarity NPD6653 Approved
0.7006 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD1240 Approved
0.7006 Intermediate Similarity NPD4140 Approved
0.7006 Intermediate Similarity NPD3620 Phase 2
0.7005 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD6032 Approved
0.7 Intermediate Similarity NPD6099 Approved
0.7 Intermediate Similarity NPD3539 Phase 1
0.7 Intermediate Similarity NPD5353 Approved
0.7 Intermediate Similarity NPD6100 Approved
0.7 Intermediate Similarity NPD6374 Clinical (unspecified phase)
0.6993 Remote Similarity NPD1203 Approved
0.6987 Remote Similarity NPD1296 Phase 2
0.6975 Remote Similarity NPD5177 Phase 3
0.6972 Remote Similarity NPD290 Approved
0.6972 Remote Similarity NPD1358 Approved
0.6966 Remote Similarity NPD7843 Approved
0.6962 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6957 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6954 Remote Similarity NPD1611 Approved
0.6954 Remote Similarity NPD1535 Discovery
0.6954 Remote Similarity NPD3705 Approved
0.6951 Remote Similarity NPD5058 Phase 3
0.6947 Remote Similarity NPD7680 Approved
0.6943 Remote Similarity NPD4062 Phase 3
0.6939 Remote Similarity NPD7157 Approved
0.6937 Remote Similarity NPD5588 Approved
0.6937 Remote Similarity NPD5960 Phase 3
0.6933 Remote Similarity NPD8166 Discontinued
0.6933 Remote Similarity NPD1778 Approved
0.6933 Remote Similarity NPD4626 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data