Structure

Physi-Chem Properties

Molecular Weight:  438.2
Volume:  467.516
LogP:  5.75
LogD:  3.749
LogS:  -3.942
# Rotatable Bonds:  9
TPSA:  107.22
# H-Bond Aceptor:  6
# H-Bond Donor:  4
# Rings:  2
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.234
Synthetic Accessibility Score:  3.579
Fsp3:  0.269
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.138
MDCK Permeability:  1.4387764167622663e-05
Pgp-inhibitor:  0.873
Pgp-substrate:  0.867
Human Intestinal Absorption (HIA):  0.021
20% Bioavailability (F20%):  0.91
30% Bioavailability (F30%):  0.104

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.003
Plasma Protein Binding (PPB):  100.26737213134766%
Volume Distribution (VD):  0.522
Pgp-substrate:  0.839365541934967%

ADMET: Metabolism

CYP1A2-inhibitor:  0.885
CYP1A2-substrate:  0.879
CYP2C19-inhibitor:  0.758
CYP2C19-substrate:  0.063
CYP2C9-inhibitor:  0.828
CYP2C9-substrate:  0.949
CYP2D6-inhibitor:  0.912
CYP2D6-substrate:  0.853
CYP3A4-inhibitor:  0.481
CYP3A4-substrate:  0.162

ADMET: Excretion

Clearance (CL):  11.202
Half-life (T1/2):  0.649

ADMET: Toxicity

hERG Blockers:  0.045
Human Hepatotoxicity (H-HT):  0.594
Drug-inuced Liver Injury (DILI):  0.64
AMES Toxicity:  0.163
Rat Oral Acute Toxicity:  0.636
Maximum Recommended Daily Dose:  0.935
Skin Sensitization:  0.943
Carcinogencity:  0.39
Eye Corrosion:  0.003
Eye Irritation:  0.918
Respiratory Toxicity:  0.503

Download Data

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General Info & Identifiers & Properties  
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Similar NPs/Drugs  

  Natural Product: NPC153979

Natural Product ID:  NPC153979
Common Name*:   Kuraidin
IUPAC Name:   (E)-1-[2,4-dihydroxy-6-methoxy-3-[(2R)-5-methyl-2-prop-1-en-2-ylhex-4-enyl]phenyl]-3-(2,4-dihydroxyphenyl)prop-2-en-1-one
Synonyms:   Kuraidin; Kuraridin
Standard InCHIKey:  PIAPWPAWQGDOMN-SXAWMYDMSA-N
Standard InCHI:  InChI=1S/C26H30O6/c1-15(2)6-7-18(16(3)4)12-20-23(30)14-24(32-5)25(26(20)31)21(28)11-9-17-8-10-19(27)13-22(17)29/h6,8-11,13-14,18,27,29-31H,3,7,12H2,1-2,4-5H3/b11-9+/t18-/m1/s1
SMILES:  CC(=CC[C@H](Cc1c(cc(c(C(=O)/C=C/c2ccc(cc2O)O)c1O)OC)O)C(=C)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL243362
PubChem CID:   44428631
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0003467] Linear 1,3-diarylpropanoids
        • [CHEMONTID:0001630] Chalcones and dihydrochalcones
          • [CHEMONTID:0003509] 3-prenylated chalcones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[10654410]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[10843587]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. PMID[11054840]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota twigs n.a. n.a. PMID[1453182]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota n.a. leaf n.a. PMID[15165152]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota leaves n.a. n.a. PMID[15165152]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[15568770]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. PMID[15911254]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16392664]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota roots Hualien Hsien, Taiwan 2003-JUL PMID[16933887]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[16933887]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. PMID[17951038]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[18175961]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[18348535]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. root n.a. PMID[18975262]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. PMID[19407970]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. bark n.a. PMID[21553897]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24295087]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. PMID[24333010]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. PMID[24459770]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[27575476]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[30298740]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota Roots n.a. n.a. PMID[9868163]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. root n.a. Database[Article]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20489 Epilobium hirsutum Species Onagraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[Title]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18286 Lycogala epidendrum Species Enteridiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18866 Pteridium esculentum Species Dennstaedtiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17560 Pancratium sickenbergeri Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17258 Rhinella marina Species Bufonidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9968 Shigella dysenteriae Species Enterobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO19810 Myxococcus stipitatus Species Myxococcaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21495 Abelia chinensis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18668 Asimina parviflora Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17334 Onopordum acanthium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27367 Latrunculia magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20843 Monsonia senegalensis Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20624 Simarouba glauca Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19511 Dolabella californica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22961 Cordia leucocephala Species Cordiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18473 Plathymenia reticulata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19036 Esenbeckia leiocarpa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5903 Conus mus Species Conidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22937 Vernonia fagifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21631 Faramea salicifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21038 Lemaireocereus longispinus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19912 Vellozia nanuzae Species Velloziaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3152 Morella rubra Species Myricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21170 Embelia parviflora Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28202 Helichrysum tenuifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20879 Clerodendrum bungei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19667 Hypericum styphelioides Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20142 Embelia schimperi Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20084 Atraphaxis spinosa Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18143 Dendronephthya griffini Species Nephtheidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20421 Aplophyllum alberti-regelii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20598 Lythrum salicaria Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16569 Gymnocalycium schickendantzii Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19995 Baccharis neglecta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11523 Erysimum leptophyllum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21375 Euphorbia nematocypha Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20489 Epilobium hirsutum Species Onagraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28072 Theonella conica Species Theonellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19231 Sophora flavescens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17849 Centaurea maculosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18176 Ephedra sinica Species Ephedraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20680 Erythrina melanacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21243 Siphonaria capensis Species Siphonariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4051 Tricholoma columbetta Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13449 Syzygium polycephaloides Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21108 Eria anomala Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12313 Haplophyllum obtusifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14241 Planchonia grandis Species Asterolecaniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16141 Piper regnellii Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12056 Chondrodendron tomentosum Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21562 Diospyros assimilis Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1536 Individual Protein Phosphodiesterase 5A Rattus norvegicus IC50 = 640.0 nM PMID[531198]
NPT640 Individual Protein Sodium/glucose cotransporter 1 Homo sapiens Inhibition = 71.1 % PMID[531199]
NPT641 Individual Protein Sodium/glucose cotransporter 2 Homo sapiens Inhibition = 100.0 % PMID[531199]
NPT30 Individual Protein Cyclooxygenase-1 Homo sapiens IC50 = 600.0 nM PMID[531200]
NPT2 Others Unspecified IC50 = 1250.0 nM PMID[531198]
NPT1537 Protein Family Phosphodiesterase 4 Rattus norvegicus IC50 = 8270.0 nM PMID[531198]
NPT2 Others Unspecified Ratio = 2.0 n.a. PMID[531198]
NPT2 Others Unspecified Ratio = 12.9 n.a. PMID[531198]
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 EC50 > 300.0 ug.mL-1 PMID[531201]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC153979 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9924 High Similarity NPC168105
0.9924 High Similarity NPC186838
0.9924 High Similarity NPC1486
0.9924 High Similarity NPC274109
0.9924 High Similarity NPC477242
0.9924 High Similarity NPC150399
0.9924 High Similarity NPC41461
0.9924 High Similarity NPC66349
0.9924 High Similarity NPC249606
0.9924 High Similarity NPC12165
0.9924 High Similarity NPC477243
0.9924 High Similarity NPC25287
0.9924 High Similarity NPC477244
0.9924 High Similarity NPC98115
0.985 High Similarity NPC477956
0.9848 High Similarity NPC472419
0.9848 High Similarity NPC317119
0.9847 High Similarity NPC156092
0.9847 High Similarity NPC131039
0.9847 High Similarity NPC13575
0.9774 High Similarity NPC21350
0.9771 High Similarity NPC286336
0.9771 High Similarity NPC103842
0.9701 High Similarity NPC470211
0.9701 High Similarity NPC472366
0.9695 High Similarity NPC294593
0.9695 High Similarity NPC192304
0.9695 High Similarity NPC312318
0.9695 High Similarity NPC263670
0.9695 High Similarity NPC472365
0.9695 High Similarity NPC20560
0.9695 High Similarity NPC82225
0.9695 High Similarity NPC204960
0.9695 High Similarity NPC175098
0.9695 High Similarity NPC337373
0.9695 High Similarity NPC188646
0.9695 High Similarity NPC242294
0.9695 High Similarity NPC56031
0.9695 High Similarity NPC27643
0.9695 High Similarity NPC18877
0.9695 High Similarity NPC159623
0.9695 High Similarity NPC144051
0.9695 High Similarity NPC139813
0.9695 High Similarity NPC28753
0.963 High Similarity NPC204985
0.963 High Similarity NPC219917
0.963 High Similarity NPC172250
0.963 High Similarity NPC80962
0.963 High Similarity NPC326109
0.963 High Similarity NPC213659
0.963 High Similarity NPC259166
0.963 High Similarity NPC48624
0.963 High Similarity NPC11056
0.963 High Similarity NPC215311
0.963 High Similarity NPC144118
0.9627 High Similarity NPC471620
0.9627 High Similarity NPC472368
0.9627 High Similarity NPC251681
0.9627 High Similarity NPC243528
0.9624 High Similarity NPC24394
0.9624 High Similarity NPC213603
0.9618 High Similarity NPC212631
0.9618 High Similarity NPC129132
0.9618 High Similarity NPC257756
0.9618 High Similarity NPC205468
0.9618 High Similarity NPC87231
0.9559 High Similarity NPC470087
0.9559 High Similarity NPC55832
0.9559 High Similarity NPC469404
0.9559 High Similarity NPC110969
0.9559 High Similarity NPC470089
0.9559 High Similarity NPC26051
0.9559 High Similarity NPC282300
0.9559 High Similarity NPC268204
0.9559 High Similarity NPC321980
0.9559 High Similarity NPC52789
0.9556 High Similarity NPC295384
0.9556 High Similarity NPC283429
0.9542 High Similarity NPC164236
0.9542 High Similarity NPC308037
0.9542 High Similarity NPC475008
0.9542 High Similarity NPC262359
0.9542 High Similarity NPC309717
0.9542 High Similarity NPC128348
0.9542 High Similarity NPC66384
0.9542 High Similarity NPC64359
0.9542 High Similarity NPC186097
0.9542 High Similarity NPC475009
0.9542 High Similarity NPC112192
0.9542 High Similarity NPC189106
0.9542 High Similarity NPC313618
0.9493 High Similarity NPC328623
0.9493 High Similarity NPC473013
0.9493 High Similarity NPC473015
0.9489 High Similarity NPC11561
0.9489 High Similarity NPC226636
0.9489 High Similarity NPC297600
0.9485 High Similarity NPC270883
0.9485 High Similarity NPC261227
0.9485 High Similarity NPC241100
0.9485 High Similarity NPC101366
0.9485 High Similarity NPC69769
0.9485 High Similarity NPC253822
0.9485 High Similarity NPC159275
0.9485 High Similarity NPC265178
0.9485 High Similarity NPC172986
0.9481 High Similarity NPC124269
0.9478 High Similarity NPC473391
0.9478 High Similarity NPC472367
0.9478 High Similarity NPC472364
0.9478 High Similarity NPC476333
0.9474 High Similarity NPC164136
0.947 High Similarity NPC15834
0.947 High Similarity NPC215875
0.9466 High Similarity NPC324482
0.9424 High Similarity NPC477955
0.9424 High Similarity NPC25844
0.942 High Similarity NPC81697
0.942 High Similarity NPC175504
0.942 High Similarity NPC51887
0.942 High Similarity NPC117836
0.942 High Similarity NPC166138
0.942 High Similarity NPC475705
0.942 High Similarity NPC257097
0.942 High Similarity NPC106985
0.942 High Similarity NPC91560
0.942 High Similarity NPC310130
0.942 High Similarity NPC107177
0.942 High Similarity NPC223812
0.942 High Similarity NPC221432
0.942 High Similarity NPC75049
0.942 High Similarity NPC125894
0.942 High Similarity NPC278249
0.942 High Similarity NPC149026
0.942 High Similarity NPC77794
0.942 High Similarity NPC245482
0.942 High Similarity NPC150408
0.942 High Similarity NPC39329
0.942 High Similarity NPC85162
0.942 High Similarity NPC143896
0.942 High Similarity NPC68104
0.942 High Similarity NPC169591
0.942 High Similarity NPC476178
0.942 High Similarity NPC301751
0.942 High Similarity NPC164980
0.942 High Similarity NPC18585
0.9416 High Similarity NPC156590
0.9416 High Similarity NPC40118
0.9416 High Similarity NPC232021
0.9416 High Similarity NPC205006
0.9416 High Similarity NPC26238
0.9416 High Similarity NPC103362
0.9416 High Similarity NPC118840
0.9416 High Similarity NPC126534
0.9416 High Similarity NPC147688
0.9416 High Similarity NPC3188
0.9416 High Similarity NPC64908
0.9412 High Similarity NPC217186
0.9412 High Similarity NPC303633
0.9412 High Similarity NPC18260
0.9412 High Similarity NPC96565
0.9412 High Similarity NPC220062
0.9412 High Similarity NPC78913
0.9412 High Similarity NPC53181
0.9412 High Similarity NPC55018
0.9412 High Similarity NPC216978
0.9412 High Similarity NPC109232
0.9412 High Similarity NPC301217
0.9407 High Similarity NPC303644
0.9407 High Similarity NPC162680
0.9407 High Similarity NPC23870
0.9407 High Similarity NPC188879
0.9407 High Similarity NPC116632
0.9407 High Similarity NPC7013
0.9407 High Similarity NPC181124
0.9407 High Similarity NPC209560
0.9407 High Similarity NPC294409
0.9398 High Similarity NPC16197
0.9394 High Similarity NPC27490
0.9389 High Similarity NPC247779
0.9389 High Similarity NPC84772
0.9353 High Similarity NPC473014
0.9353 High Similarity NPC209040
0.9353 High Similarity NPC131579
0.9353 High Similarity NPC131568
0.9353 High Similarity NPC476055
0.9353 High Similarity NPC235217
0.9353 High Similarity NPC236766
0.9353 High Similarity NPC197252
0.9353 High Similarity NPC234629
0.9353 High Similarity NPC271288
0.9353 High Similarity NPC311741
0.9348 High Similarity NPC161506
0.9348 High Similarity NPC32739
0.9348 High Similarity NPC324436
0.9348 High Similarity NPC66515
0.9348 High Similarity NPC148545
0.9348 High Similarity NPC328164
0.9348 High Similarity NPC76338
0.9348 High Similarity NPC64915

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC153979 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9542 High Similarity NPD1240 Approved
0.9398 High Similarity NPD1607 Approved
0.9259 High Similarity NPD1510 Phase 2
0.9214 High Similarity NPD4378 Clinical (unspecified phase)
0.9078 High Similarity NPD7410 Clinical (unspecified phase)
0.9058 High Similarity NPD1549 Phase 2
0.8986 High Similarity NPD1552 Clinical (unspecified phase)
0.8986 High Similarity NPD1550 Clinical (unspecified phase)
0.8897 High Similarity NPD4380 Phase 2
0.8836 High Similarity NPD7411 Suspended
0.8832 High Similarity NPD6651 Approved
0.8784 High Similarity NPD8443 Clinical (unspecified phase)
0.8777 High Similarity NPD2796 Approved
0.8716 High Similarity NPD2393 Clinical (unspecified phase)
0.8667 High Similarity NPD7075 Discontinued
0.8643 High Similarity NPD2935 Discontinued
0.8611 High Similarity NPD6799 Approved
0.8591 High Similarity NPD7819 Suspended
0.8591 High Similarity NPD7096 Clinical (unspecified phase)
0.8523 High Similarity NPD6801 Discontinued
0.8521 High Similarity NPD970 Clinical (unspecified phase)
0.8462 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.84 Intermediate Similarity NPD1934 Approved
0.8389 Intermediate Similarity NPD6599 Discontinued
0.8356 Intermediate Similarity NPD1511 Approved
0.8355 Intermediate Similarity NPD7768 Phase 2
0.8355 Intermediate Similarity NPD3882 Suspended
0.8344 Intermediate Similarity NPD2801 Approved
0.8333 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD2800 Approved
0.831 Intermediate Similarity NPD2799 Discontinued
0.8301 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.828 Intermediate Similarity NPD7473 Discontinued
0.8276 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.8276 Intermediate Similarity NPD3750 Approved
0.8273 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8252 Intermediate Similarity NPD1551 Phase 2
0.8243 Intermediate Similarity NPD1512 Approved
0.8207 Intermediate Similarity NPD1243 Approved
0.8205 Intermediate Similarity NPD6232 Discontinued
0.8182 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.8176 Intermediate Similarity NPD2534 Approved
0.8176 Intermediate Similarity NPD2533 Approved
0.8176 Intermediate Similarity NPD2532 Approved
0.8156 Intermediate Similarity NPD943 Approved
0.8141 Intermediate Similarity NPD6959 Discontinued
0.8116 Intermediate Similarity NPD2798 Approved
0.8077 Intermediate Similarity NPD5494 Approved
0.8075 Intermediate Similarity NPD5953 Discontinued
0.8069 Intermediate Similarity NPD2344 Approved
0.8067 Intermediate Similarity NPD920 Approved
0.8065 Intermediate Similarity NPD3749 Approved
0.8063 Intermediate Similarity NPD7286 Phase 2
0.8063 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8043 Intermediate Similarity NPD1203 Approved
0.8041 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7987 Intermediate Similarity NPD6166 Phase 2
0.7987 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7987 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7975 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7959 Intermediate Similarity NPD2654 Approved
0.7956 Intermediate Similarity NPD3972 Approved
0.7947 Intermediate Similarity NPD5403 Approved
0.7935 Intermediate Similarity NPD3817 Phase 2
0.7933 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7931 Intermediate Similarity NPD3748 Approved
0.7888 Intermediate Similarity NPD3818 Discontinued
0.7887 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7887 Intermediate Similarity NPD2313 Discontinued
0.7872 Intermediate Similarity NPD6832 Phase 2
0.7867 Intermediate Similarity NPD7390 Discontinued
0.7852 Intermediate Similarity NPD2309 Approved
0.7836 Intermediate Similarity NPD9493 Approved
0.7826 Intermediate Similarity NPD9717 Approved
0.7815 Intermediate Similarity NPD5401 Approved
0.7805 Intermediate Similarity NPD6559 Discontinued
0.7791 Intermediate Similarity NPD7074 Phase 3
0.7785 Intermediate Similarity NPD4628 Phase 3
0.7771 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7762 Intermediate Similarity NPD3268 Approved
0.7755 Intermediate Similarity NPD6099 Approved
0.7755 Intermediate Similarity NPD6100 Approved
0.7754 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7746 Intermediate Similarity NPD4908 Phase 1
0.773 Intermediate Similarity NPD7054 Approved
0.7727 Intermediate Similarity NPD7458 Discontinued
0.7727 Intermediate Similarity NPD3226 Approved
0.7721 Intermediate Similarity NPD9545 Approved
0.7712 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD7472 Approved
0.7673 Intermediate Similarity NPD919 Approved
0.7667 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD7003 Approved
0.766 Intermediate Similarity NPD1164 Approved
0.766 Intermediate Similarity NPD2797 Approved
0.7636 Intermediate Similarity NPD6797 Phase 2
0.7626 Intermediate Similarity NPD1610 Phase 2
0.7626 Intermediate Similarity NPD422 Phase 1
0.7622 Intermediate Similarity NPD5844 Phase 1
0.7595 Intermediate Similarity NPD5402 Approved
0.7593 Intermediate Similarity NPD3926 Phase 2
0.7591 Intermediate Similarity NPD1548 Phase 1
0.759 Intermediate Similarity NPD7251 Discontinued
0.7589 Intermediate Similarity NPD1876 Approved
0.7584 Intermediate Similarity NPD2346 Discontinued
0.7578 Intermediate Similarity NPD1247 Approved
0.7576 Intermediate Similarity NPD1729 Discontinued
0.7568 Intermediate Similarity NPD7033 Discontinued
0.7545 Intermediate Similarity NPD7808 Phase 3
0.7536 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.7535 Intermediate Similarity NPD1470 Approved
0.7531 Intermediate Similarity NPD5710 Approved
0.7531 Intermediate Similarity NPD5711 Approved
0.7517 Intermediate Similarity NPD5406 Approved
0.7517 Intermediate Similarity NPD5408 Approved
0.7517 Intermediate Similarity NPD5404 Approved
0.7517 Intermediate Similarity NPD5405 Approved
0.7516 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7514 Intermediate Similarity NPD4363 Phase 3
0.7514 Intermediate Similarity NPD4360 Phase 2
0.75 Intermediate Similarity NPD1201 Approved
0.7483 Intermediate Similarity NPD5124 Phase 1
0.7483 Intermediate Similarity NPD230 Phase 1
0.7483 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7471 Intermediate Similarity NPD4361 Phase 2
0.7471 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.745 Intermediate Similarity NPD4308 Phase 3
0.745 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD1608 Approved
0.744 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7429 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7413 Intermediate Similarity NPD3266 Approved
0.7413 Intermediate Similarity NPD3267 Approved
0.7397 Intermediate Similarity NPD3764 Approved
0.7365 Intermediate Similarity NPD1933 Approved
0.7365 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD1241 Discontinued
0.7351 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7343 Intermediate Similarity NPD3225 Approved
0.7343 Intermediate Similarity NPD1283 Approved
0.7329 Intermediate Similarity NPD3027 Phase 3
0.7329 Intermediate Similarity NPD4625 Phase 3
0.7321 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7312 Intermediate Similarity NPD1465 Phase 2
0.7299 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.729 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7286 Intermediate Similarity NPD1651 Approved
0.7279 Intermediate Similarity NPD411 Approved
0.7279 Intermediate Similarity NPD1296 Phase 2
0.7278 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7278 Intermediate Similarity NPD6104 Discontinued
0.7273 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD2296 Approved
0.7267 Intermediate Similarity NPD4288 Approved
0.7248 Intermediate Similarity NPD447 Suspended
0.7244 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD1019 Discontinued
0.7239 Intermediate Similarity NPD74 Approved
0.7239 Intermediate Similarity NPD9266 Approved
0.7237 Intermediate Similarity NPD1471 Phase 3
0.7234 Intermediate Similarity NPD17 Approved
0.7212 Intermediate Similarity NPD7229 Phase 3
0.7207 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7197 Intermediate Similarity NPD5049 Phase 3
0.7192 Intermediate Similarity NPD9494 Approved
0.7188 Intermediate Similarity NPD5890 Approved
0.7188 Intermediate Similarity NPD5889 Approved
0.7183 Intermediate Similarity NPD3847 Discontinued
0.7181 Intermediate Similarity NPD4307 Phase 2
0.7176 Intermediate Similarity NPD940 Approved
0.7176 Intermediate Similarity NPD846 Approved
0.7164 Intermediate Similarity NPD9267 Approved
0.7164 Intermediate Similarity NPD9265 Clinical (unspecified phase)
0.7164 Intermediate Similarity NPD9263 Approved
0.7164 Intermediate Similarity NPD9264 Approved
0.7162 Intermediate Similarity NPD6798 Discontinued
0.7161 Intermediate Similarity NPD2354 Approved
0.7153 Intermediate Similarity NPD4749 Approved
0.7143 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD37 Approved
0.7143 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD4662 Approved
0.7134 Intermediate Similarity NPD4661 Approved
0.7133 Intermediate Similarity NPD6355 Discontinued
0.7133 Intermediate Similarity NPD1281 Approved
0.7126 Intermediate Similarity NPD2403 Approved
0.7125 Intermediate Similarity NPD6585 Discontinued
0.7123 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7113 Intermediate Similarity NPD4626 Approved
0.7093 Intermediate Similarity NPD8312 Approved
0.7093 Intermediate Similarity NPD8313 Approved
0.7086 Intermediate Similarity NPD4287 Approved
0.7086 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD1481 Phase 2
0.7075 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7071 Intermediate Similarity NPD405 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD4060 Phase 1
0.7067 Intermediate Similarity NPD3140 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data