Structure

Physi-Chem Properties

Molecular Weight:  338.21
Volume:  362.029
LogP:  5.922
LogD:  3.652
LogS:  -3.55
# Rotatable Bonds:  13
TPSA:  86.99
# H-Bond Aceptor:  5
# H-Bond Donor:  3
# Rings:  1
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.287
Synthetic Accessibility Score:  2.142
Fsp3:  0.632
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.969
MDCK Permeability:  2.3651824449189007e-05
Pgp-inhibitor:  0.028
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.008
20% Bioavailability (F20%):  1.0
30% Bioavailability (F30%):  0.997

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.018
Plasma Protein Binding (PPB):  99.32200622558594%
Volume Distribution (VD):  4.039
Pgp-substrate:  1.3773059844970703%

ADMET: Metabolism

CYP1A2-inhibitor:  0.888
CYP1A2-substrate:  0.185
CYP2C19-inhibitor:  0.796
CYP2C19-substrate:  0.062
CYP2C9-inhibitor:  0.345
CYP2C9-substrate:  0.81
CYP2D6-inhibitor:  0.876
CYP2D6-substrate:  0.133
CYP3A4-inhibitor:  0.292
CYP3A4-substrate:  0.049

ADMET: Excretion

Clearance (CL):  9.866
Half-life (T1/2):  0.861

ADMET: Toxicity

hERG Blockers:  0.076
Human Hepatotoxicity (H-HT):  0.011
Drug-inuced Liver Injury (DILI):  0.139
AMES Toxicity:  0.118
Rat Oral Acute Toxicity:  0.01
Maximum Recommended Daily Dose:  0.014
Skin Sensitization:  0.961
Carcinogencity:  0.085
Eye Corrosion:  0.417
Eye Irritation:  0.958
Respiratory Toxicity:  0.215

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC156892

Natural Product ID:  NPC156892
Common Name*:   Dodecyl Gallate
IUPAC Name:   dodecyl 3,4,5-trihydroxybenzoate
Synonyms:   Dodecyl 3,4,5-trihydroxybenzoate; E312; n-dodecylgallate
Standard InCHIKey:  RPWFJAMTCNSJKK-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C19H30O5/c1-2-3-4-5-6-7-8-9-10-11-12-24-19(23)15-13-16(20)18(22)17(21)14-15/h13-14,20-22H,2-12H2,1H3
SMILES:  CCCCCCCCCCCCOC(=O)c1cc(c(c(c1)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL16121
PubChem CID:   14425
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0002279] Benzene and substituted derivatives
        • [CHEMONTID:0000176] Benzoic acids and derivatives
          • [CHEMONTID:0001248] Hydroxybenzoic acid derivatives
            • [CHEMONTID:0001251] Gallic acid and derivatives
              • [CHEMONTID:0003539] Galloyl esters

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. DOI[10.1002/hlca.19270100148]
NPO9445 Crocus sativus Species Iridaceae Eukaryota Petals n.a. n.a. PMID[15043425]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. PMID[24338885]
NPO9445 Crocus sativus Species Iridaceae Eukaryota Silk Stigma Style n.a. n.a. Database[FooDB]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9445 Crocus sativus Species Iridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT326 Individual Protein Squalene monooxygenase Rattus norvegicus IC50 = 61.0 nM PMID[492112]
NPT326 Individual Protein Squalene monooxygenase Rattus norvegicus IC50 = 61.0 nM PMID[492113]
NPT116 Cell Line HL-60 Homo sapiens IC50 = 1100.0 nM PMID[492114]
NPT116 Cell Line HL-60 Homo sapiens Activity = 2.5 % PMID[492114]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 1000.0 nM PMID[492119]
NPT404 Cell Line CCRF-CEM Homo sapiens IC50 = 47400.0 nM PMID[492119]
NPT137 Cell Line L1210 Mus musculus IC50 = 10900.0 nM PMID[492119]
NPT169 Cell Line B16-F10 Mus musculus IC50 = 48000.0 nM PMID[492119]
NPT1460 Cell Line L929 Mus musculus IC50 = 1000.0 nM PMID[492119]
NPT116 Cell Line HL-60 Homo sapiens IC50 = 33000.0 nM PMID[492119]
NPT404 Cell Line CCRF-CEM Homo sapiens IC50 = 15460.0 nM PMID[492120]
NPT333 Cell Line CEM Homo sapiens CC50 = 2800.0 nM PMID[492121]
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 688.9 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 27184.5 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 54947.7 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 27306 nM PubChem BioAssay data set
NPT152 Individual Protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 76616.3 nM PubChem BioAssay data set
NPT152 Individual Protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 68589.6 nM PubChem BioAssay data set
NPT106 Individual Protein Peroxisome proliferator-activated receptor delta Homo sapiens Potency n.a. 54723.6 nM PubChem BioAssay data set
NPT106 Individual Protein Peroxisome proliferator-activated receptor delta Homo sapiens Potency n.a. 61652.4 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 54723.6 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 48972.2 nM PubChem BioAssay data set
NPT162 Individual Protein Heat shock protein beta-1 Homo sapiens Potency n.a. 48972.2 nM PubChem BioAssay data set
NPT162 Individual Protein Heat shock protein beta-1 Homo sapiens Potency n.a. 13745.9 nM PubChem BioAssay data set
NPT106 Individual Protein Peroxisome proliferator-activated receptor delta Homo sapiens Potency n.a. 68892.9 nM PubChem BioAssay data set
NPT163 Individual Protein Nuclear factor NF-kappa-B p105 subunit Homo sapiens Potency n.a. 24444.1 nM PubChem BioAssay data set
NPT163 Individual Protein Nuclear factor NF-kappa-B p105 subunit Homo sapiens Potency n.a. 21875.1 nM PubChem BioAssay data set
NPT79 Organism Bacillus subtilis Bacillus subtilis MFC = 12.5 ug ml-1 PMID[492110]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 12.5 ug.mL-1 PMID[492110]
NPT2539 Organism Corynebacterium ammoniagenes Corynebacterium ammoniagenes MIC = 12.5 ug.mL-1 PMID[492110]
NPT729 Organism Micrococcus luteus Micrococcus luteus MIC = 100.0 ug.mL-1 PMID[492110]
NPT878 Organism Streptococcus mutans Streptococcus mutans MIC = 12.5 ug.mL-1 PMID[492110]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 12.5 ug.mL-1 PMID[492110]
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MIC = 6.25 ug.mL-1 PMID[492110]
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MIC > 800.0 ug.mL-1 PMID[492110]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 800.0 ug.mL-1 PMID[492110]
NPT766 Organism Proteus vulgaris Proteus vulgaris MIC > 800.0 ug.mL-1 PMID[492110]
NPT766 Organism Proteus vulgaris Proteus vulgaris MIC = 25.0 ug.mL-1 PMID[492110]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae MFC > 1600.0 ug ml-1 PMID[492110]
NPT774 Organism Zygosaccharomyces bailii Zygosaccharomyces bailii MIC > 1600.0 ug.mL-1 PMID[492110]
NPT20 Organism Candida albicans Candida albicans MFC > 400.0 ug ml-1 PMID[492110]
NPT21 Organism Aspergillus niger Aspergillus niger MFC > 400.0 ug ml-1 PMID[492110]
NPT79 Organism Bacillus subtilis Bacillus subtilis MBC = 25.0 ug ml-1 PMID[492110]
NPT2539 Organism Corynebacterium ammoniagenes Corynebacterium ammoniagenes MBC = 25.0 ug ml-1 PMID[492110]
NPT729 Organism Micrococcus luteus Micrococcus luteus MBC = 25.0 ug ml-1 PMID[492110]
NPT878 Organism Streptococcus mutans Streptococcus mutans MBC = 100.0 ug ml-1 PMID[492110]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MBC = 25.0 ug ml-1 PMID[492110]
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MBC = 6.25 ug ml-1 PMID[492110]
NPT19 Organism Escherichia coli Escherichia coli MBC > 800.0 ug ml-1 PMID[492110]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MBC > 800.0 ug ml-1 PMID[492110]
NPT720 Organism Enterobacter aerogenes Enterobacter aerogenes MBC > 800.0 ug ml-1 PMID[492110]
NPT766 Organism Proteus vulgaris Proteus vulgaris MBC > 800.0 ug ml-1 PMID[492110]
NPT1190 Organism Salmonella enterica Salmonella enterica MBC = 50.0 ug ml-1 PMID[492110]
NPT774 Organism Zygosaccharomyces bailii Zygosaccharomyces bailii MFC > 1600.0 ug ml-1 PMID[492110]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 25.0 ug.mL-1 PMID[492111]
NPT79 Organism Bacillus subtilis Bacillus subtilis MBC = 25.0 ug ml-1 PMID[492111]
NPT1261 Organism Bacillus thuringiensis Bacillus thuringiensis MIC = 50.0 ug.mL-1 PMID[492111]
NPT2539 Organism Corynebacterium ammoniagenes Corynebacterium ammoniagenes MIC = 25.0 ug.mL-1 PMID[492111]
NPT2539 Organism Corynebacterium ammoniagenes Corynebacterium ammoniagenes MBC = 25.0 ug ml-1 PMID[492111]
NPT729 Organism Micrococcus luteus Micrococcus luteus MIC = 12.5 ug.mL-1 PMID[492111]
NPT729 Organism Micrococcus luteus Micrococcus luteus MBC = 25.0 ug ml-1 PMID[492111]
NPT878 Organism Streptococcus mutans Streptococcus mutans MIC = 100.0 ug.mL-1 PMID[492111]
NPT878 Organism Streptococcus mutans Streptococcus mutans MBC = 100.0 ug ml-1 PMID[492111]
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MIC = 6.25 ug.mL-1 PMID[492111]
NPT167 Organism Propionibacterium acnes Propionibacterium acnes MBC = 6.25 ug ml-1 PMID[492111]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 12.5 ug.mL-1 PMID[492111]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MBC = 25.0 ug ml-1 PMID[492111]
NPT2 Others Unspecified IC50 = 20000.0 nM PMID[492114]
NPT329 Organism Trichophyton rubrum Trichophyton rubrum MIC = 50.0 ug.mL-1 PMID[492115]
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes MIC = 50.0 ug.mL-1 PMID[492115]
NPT327 Organism Microsporum gypseum Microsporum gypseum MIC = 100.0 ug.mL-1 PMID[492115]
NPT20 Organism Candida albicans Candida albicans MIC > 250.0 ug.mL-1 PMID[492115]
NPT186 Organism Candida tropicalis Candida tropicalis MIC > 250.0 ug.mL-1 PMID[492115]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae MIC > 250.0 ug.mL-1 PMID[492115]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans MIC > 250.0 ug.mL-1 PMID[492115]
NPT87 Organism Aspergillus fumigatus Aspergillus fumigatus MIC > 250.0 ug.mL-1 PMID[492115]
NPT185 Organism Aspergillus flavus Aspergillus flavus MIC > 250.0 ug.mL-1 PMID[492115]
NPT21 Organism Aspergillus niger Aspergillus niger MIC > 250.0 ug.mL-1 PMID[492115]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae MFC > 1600.0 ug ml-1 PMID[492118]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae MIC > 1600.0 ug.mL-1 PMID[492118]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 1000.0 nM PMID[492119]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 3000.0 nM PMID[492120]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 7060.0 nM PMID[492120]
NPT27 Others Unspecified IC50 = 30000.0 nM PMID[492120]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 EC50 >= 1000.0 nM PMID[492121]
NPT332 Organism Human immunodeficiency virus type 2 (ISOLATE ROD) Human immunodeficiency virus type 2 (ISOLATE ROD) EC50 >= 1000.0 nM PMID[492121]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 400.0 nM PMID[492121]
NPT27 Others Unspecified CC50 = 8900.0 nM PMID[492121]
NPT2 Others Unspecified Ratio CC50/EC50 > 22.0 n.a. PMID[492121]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC90 = 1.8 uM PMID[492121]
NPT2 Others Unspecified Potency n.a. 43646.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 34528.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 43468.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 24544.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 30501.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 54482.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 61130.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 27426.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 34669.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 61400.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 54947.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 68284.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 54723.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 3050.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2433.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 4327.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 27306 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 68892.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 30773.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2718.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 1933.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 76616.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 61652.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 60858.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 38741.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 19496.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 13685.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 19416.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 48972.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 384 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 273.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 38900 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 216.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 68589.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 21875.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 48341.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 48557.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 608.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 385.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 13745.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 342.2 nM PubChem BioAssay data set
NPT74 Individual Protein Proto-oncogene c-JUN Homo sapiens Potency n.a. 19416.7 nM PubChem BioAssay data set
NPT74 Individual Protein Proto-oncogene c-JUN Homo sapiens Potency n.a. 15486.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 171.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 343.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 3063.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 24444.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 48772.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2422.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 542.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2169 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 4855.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 3839.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2159.3 nM PubChem BioAssay data set

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC156892 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9922 High Similarity NPC18646
0.9767 High Similarity NPC156124
0.9767 High Similarity NPC1321
0.9767 High Similarity NPC304929
0.9612 High Similarity NPC264145
0.9333 High Similarity NPC105525
0.9333 High Similarity NPC225036
0.9333 High Similarity NPC75763
0.9333 High Similarity NPC12218
0.9308 High Similarity NPC226855
0.9259 High Similarity NPC239943
0.9203 High Similarity NPC226738
0.9203 High Similarity NPC121573
0.9203 High Similarity NPC190587
0.9203 High Similarity NPC22176
0.9185 High Similarity NPC25305
0.9185 High Similarity NPC125417
0.9185 High Similarity NPC110899
0.9185 High Similarity NPC95679
0.9185 High Similarity NPC112068
0.9154 High Similarity NPC158654
0.9065 High Similarity NPC114242
0.9065 High Similarity NPC229036
0.9065 High Similarity NPC50221
0.9051 High Similarity NPC471819
0.903 High Similarity NPC239855
0.9 High Similarity NPC108455
0.8971 High Similarity NPC475111
0.8963 High Similarity NPC155098
0.8963 High Similarity NPC248150
0.8958 High Similarity NPC221249
0.8958 High Similarity NPC75695
0.8951 High Similarity NPC306343
0.8944 High Similarity NPC248257
0.8944 High Similarity NPC43123
0.8944 High Similarity NPC120621
0.8944 High Similarity NPC142528
0.8915 High Similarity NPC225710
0.8897 High Similarity NPC208760
0.8889 High Similarity NPC140151
0.8889 High Similarity NPC288743
0.8881 High Similarity NPC75945
0.8881 High Similarity NPC107636
0.8881 High Similarity NPC42464
0.8881 High Similarity NPC92117
0.8872 High Similarity NPC94810
0.8819 High Similarity NPC473091
0.8794 High Similarity NPC469615
0.8777 High Similarity NPC4796
0.8759 High Similarity NPC252979
0.8759 High Similarity NPC274613
0.875 High Similarity NPC289572
0.875 High Similarity NPC295406
0.875 High Similarity NPC157478
0.875 High Similarity NPC200422
0.875 High Similarity NPC283823
0.875 High Similarity NPC159418
0.8741 High Similarity NPC268366
0.8732 High Similarity NPC469683
0.8714 High Similarity NPC158472
0.8707 High Similarity NPC125487
0.8707 High Similarity NPC281703
0.8705 High Similarity NPC207516
0.8696 High Similarity NPC156307
0.8686 High Similarity NPC106406
0.8686 High Similarity NPC237330
0.8681 High Similarity NPC472969
0.8676 High Similarity NPC111888
0.8671 High Similarity NPC262282
0.8671 High Similarity NPC83272
0.8667 High Similarity NPC299010
0.8662 High Similarity NPC134975
0.8658 High Similarity NPC472860
0.8649 High Similarity NPC145425
0.8649 High Similarity NPC16082
0.8649 High Similarity NPC156624
0.8649 High Similarity NPC79998
0.8649 High Similarity NPC172920
0.8649 High Similarity NPC82592
0.8649 High Similarity NPC203757
0.8643 High Similarity NPC26241
0.8643 High Similarity NPC476820
0.8643 High Similarity NPC303683
0.8643 High Similarity NPC205751
0.8643 High Similarity NPC474875
0.8643 High Similarity NPC295492
0.8643 High Similarity NPC274891
0.8643 High Similarity NPC476819
0.8639 High Similarity NPC205037
0.8639 High Similarity NPC16024
0.8639 High Similarity NPC3746
0.8639 High Similarity NPC44260
0.8639 High Similarity NPC310661
0.8639 High Similarity NPC61152
0.8639 High Similarity NPC105827
0.8633 High Similarity NPC70380
0.863 High Similarity NPC96501
0.8623 High Similarity NPC229638
0.8623 High Similarity NPC254832
0.8623 High Similarity NPC204257
0.8623 High Similarity NPC71108
0.8623 High Similarity NPC267539
0.8623 High Similarity NPC176102
0.8623 High Similarity NPC29317
0.8621 High Similarity NPC98809
0.8621 High Similarity NPC476394
0.8613 High Similarity NPC153783
0.8611 High Similarity NPC165389
0.8611 High Similarity NPC229264
0.8603 High Similarity NPC318799
0.8601 High Similarity NPC207732
0.8601 High Similarity NPC105213
0.86 High Similarity NPC87317
0.8592 High Similarity NPC312256
0.8591 High Similarity NPC300845
0.8591 High Similarity NPC318432
0.8591 High Similarity NPC150227
0.8591 High Similarity NPC88803
0.8591 High Similarity NPC250436
0.8591 High Similarity NPC104983
0.8591 High Similarity NPC291948
0.8582 High Similarity NPC326065
0.8581 High Similarity NPC43872
0.8581 High Similarity NPC144801
0.8581 High Similarity NPC197188
0.8581 High Similarity NPC291510
0.8581 High Similarity NPC281477
0.8581 High Similarity NPC116850
0.8581 High Similarity NPC238672
0.8571 High Similarity NPC478200
0.8571 High Similarity NPC278068
0.8571 High Similarity NPC94248
0.8571 High Similarity NPC152942
0.8571 High Similarity NPC191835
0.8571 High Similarity NPC142703
0.8571 High Similarity NPC112135
0.8571 High Similarity NPC219428
0.8571 High Similarity NPC212693
0.8571 High Similarity NPC302857
0.8571 High Similarity NPC37250
0.8571 High Similarity NPC33144
0.8552 High Similarity NPC81835
0.8552 High Similarity NPC476463
0.8551 High Similarity NPC204582
0.8543 High Similarity NPC203020
0.8543 High Similarity NPC53889
0.8543 High Similarity NPC239966
0.8543 High Similarity NPC24627
0.8542 High Similarity NPC473867
0.8533 High Similarity NPC1913
0.8533 High Similarity NPC160512
0.8533 High Similarity NPC84935
0.8533 High Similarity NPC190020
0.8533 High Similarity NPC289322
0.8533 High Similarity NPC77679
0.8533 High Similarity NPC68324
0.8533 High Similarity NPC104275
0.8533 High Similarity NPC38779
0.8533 High Similarity NPC114179
0.8533 High Similarity NPC4747
0.8533 High Similarity NPC156818
0.8533 High Similarity NPC49173
0.8531 High Similarity NPC473090
0.8531 High Similarity NPC471417
0.8529 High Similarity NPC285776
0.8523 High Similarity NPC199926
0.8521 High Similarity NPC110419
0.8521 High Similarity NPC472035
0.8521 High Similarity NPC478201
0.8519 High Similarity NPC79332
0.8514 High Similarity NPC289968
0.8514 High Similarity NPC161159
0.8511 High Similarity NPC203351
0.8503 High Similarity NPC56204
0.8496 Intermediate Similarity NPC85565
0.8496 Intermediate Similarity NPC145134
0.8493 Intermediate Similarity NPC474903
0.8487 Intermediate Similarity NPC266365
0.8477 Intermediate Similarity NPC160780
0.8477 Intermediate Similarity NPC289811
0.8472 Intermediate Similarity NPC257025
0.8472 Intermediate Similarity NPC478203
0.8472 Intermediate Similarity NPC210966
0.8472 Intermediate Similarity NPC86373
0.8472 Intermediate Similarity NPC126882
0.8472 Intermediate Similarity NPC277426
0.8472 Intermediate Similarity NPC210425
0.8472 Intermediate Similarity NPC280404
0.8467 Intermediate Similarity NPC54928
0.8467 Intermediate Similarity NPC219892
0.8467 Intermediate Similarity NPC189823
0.8467 Intermediate Similarity NPC239019
0.8467 Intermediate Similarity NPC247629
0.8467 Intermediate Similarity NPC134925
0.8462 Intermediate Similarity NPC156654
0.8462 Intermediate Similarity NPC258469
0.8462 Intermediate Similarity NPC301178
0.8462 Intermediate Similarity NPC43158
0.8462 Intermediate Similarity NPC277315
0.8462 Intermediate Similarity NPC299154

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC156892 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9767 High Similarity NPD230 Phase 1
0.8915 High Similarity NPD9269 Phase 2
0.8605 High Similarity NPD9268 Approved
0.8591 High Similarity NPD4868 Clinical (unspecified phase)
0.8385 Intermediate Similarity NPD9545 Approved
0.8333 Intermediate Similarity NPD6190 Approved
0.8224 Intermediate Similarity NPD3882 Suspended
0.8212 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8212 Intermediate Similarity NPD2801 Approved
0.8146 Intermediate Similarity NPD1934 Approved
0.8143 Intermediate Similarity NPD943 Approved
0.8125 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8095 Intermediate Similarity NPD1511 Approved
0.8043 Intermediate Similarity NPD9494 Approved
0.8042 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.8041 Intermediate Similarity NPD2533 Approved
0.8041 Intermediate Similarity NPD2532 Approved
0.8041 Intermediate Similarity NPD2534 Approved
0.8039 Intermediate Similarity NPD3817 Phase 2
0.7987 Intermediate Similarity NPD1512 Approved
0.7974 Intermediate Similarity NPD1465 Phase 2
0.795 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7875 Intermediate Similarity NPD3818 Discontinued
0.7852 Intermediate Similarity NPD6799 Approved
0.7848 Intermediate Similarity NPD6232 Discontinued
0.7815 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7806 Intermediate Similarity NPD5353 Approved
0.777 Intermediate Similarity NPD4628 Phase 3
0.775 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD6166 Phase 2
0.775 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7746 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7744 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7716 Intermediate Similarity NPD5844 Phase 1
0.7716 Intermediate Similarity NPD7054 Approved
0.7708 Intermediate Similarity NPD447 Suspended
0.7707 Intermediate Similarity NPD7075 Discontinued
0.7702 Intermediate Similarity NPD7473 Discontinued
0.7687 Intermediate Similarity NPD7266 Discontinued
0.7676 Intermediate Similarity NPD3027 Phase 3
0.7671 Intermediate Similarity NPD1510 Phase 2
0.7669 Intermediate Similarity NPD7472 Approved
0.7669 Intermediate Similarity NPD7074 Phase 3
0.7662 Intermediate Similarity NPD4380 Phase 2
0.7658 Intermediate Similarity NPD6234 Discontinued
0.7651 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7639 Intermediate Similarity NPD1240 Approved
0.7628 Intermediate Similarity NPD7819 Suspended
0.7628 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7622 Intermediate Similarity NPD3764 Approved
0.7622 Intermediate Similarity NPD6797 Phase 2
0.7619 Intermediate Similarity NPD2935 Discontinued
0.7616 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7597 Intermediate Similarity NPD3455 Phase 2
0.7578 Intermediate Similarity NPD5242 Approved
0.7576 Intermediate Similarity NPD7251 Discontinued
0.7566 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7556 Intermediate Similarity NPD9493 Approved
0.7548 Intermediate Similarity NPD6599 Discontinued
0.7538 Intermediate Similarity NPD9265 Clinical (unspecified phase)
0.7534 Intermediate Similarity NPD1607 Approved
0.7533 Intermediate Similarity NPD8166 Discontinued
0.7533 Intermediate Similarity NPD3750 Approved
0.7517 Intermediate Similarity NPD1549 Phase 2
0.75 Intermediate Similarity NPD1551 Phase 2
0.75 Intermediate Similarity NPD7411 Suspended
0.75 Intermediate Similarity NPD6385 Approved
0.75 Intermediate Similarity NPD6386 Approved
0.7484 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.747 Intermediate Similarity NPD7685 Pre-registration
0.7468 Intermediate Similarity NPD5402 Approved
0.7467 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7452 Intermediate Similarity NPD37 Approved
0.7452 Intermediate Similarity NPD6801 Discontinued
0.745 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.745 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD7808 Phase 3
0.7421 Intermediate Similarity NPD4965 Approved
0.7421 Intermediate Similarity NPD4966 Approved
0.7421 Intermediate Similarity NPD4967 Phase 2
0.7419 Intermediate Similarity NPD1653 Approved
0.7417 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD5494 Approved
0.7383 Intermediate Similarity NPD2796 Approved
0.7376 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD7228 Approved
0.7329 Intermediate Similarity NPD919 Approved
0.7315 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7312 Intermediate Similarity NPD7768 Phase 2
0.7301 Intermediate Similarity NPD5710 Approved
0.7301 Intermediate Similarity NPD5711 Approved
0.7294 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7292 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7279 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7279 Intermediate Similarity NPD825 Approved
0.7279 Intermediate Similarity NPD826 Approved
0.7279 Intermediate Similarity NPD1613 Approved
0.7244 Intermediate Similarity NPD920 Approved
0.7244 Intermediate Similarity NPD5403 Approved
0.7241 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD7199 Phase 2
0.7237 Intermediate Similarity NPD2800 Approved
0.7234 Intermediate Similarity NPD422 Phase 1
0.7226 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD3748 Approved
0.7183 Intermediate Similarity NPD1608 Approved
0.7183 Intermediate Similarity NPD9717 Approved
0.716 Intermediate Similarity NPD6559 Discontinued
0.716 Intermediate Similarity NPD3749 Approved
0.7152 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD1247 Approved
0.7134 Intermediate Similarity NPD6959 Discontinued
0.7124 Intermediate Similarity NPD1243 Approved
0.7115 Intermediate Similarity NPD5401 Approved
0.7115 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD555 Phase 2
0.7101 Intermediate Similarity NPD5953 Discontinued
0.709 Intermediate Similarity NPD2182 Approved
0.7083 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD7286 Phase 2
0.7069 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD6651 Approved
0.7059 Intermediate Similarity NPD228 Approved
0.7051 Intermediate Similarity NPD4357 Discontinued
0.7051 Intermediate Similarity NPD7390 Discontinued
0.7048 Intermediate Similarity NPD3926 Phase 2
0.7039 Intermediate Similarity NPD9570 Approved
0.7039 Intermediate Similarity NPD6100 Approved
0.7039 Intermediate Similarity NPD6099 Approved
0.7034 Intermediate Similarity NPD1203 Approved
0.7027 Intermediate Similarity NPD411 Approved
0.7007 Intermediate Similarity NPD6832 Phase 2
0.7006 Intermediate Similarity NPD3146 Approved
0.7006 Intermediate Similarity NPD3688 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.6987 Remote Similarity NPD643 Clinical (unspecified phase)
0.6986 Remote Similarity NPD257 Approved
0.6986 Remote Similarity NPD258 Approved
0.698 Remote Similarity NPD6233 Phase 2
0.698 Remote Similarity NPD259 Phase 1
0.6974 Remote Similarity NPD2799 Discontinued
0.6972 Remote Similarity NPD17 Approved
0.6972 Remote Similarity NPD1778 Approved
0.6963 Remote Similarity NPD9266 Approved
0.6963 Remote Similarity NPD74 Approved
0.6954 Remote Similarity NPD8150 Discontinued
0.6951 Remote Similarity NPD6971 Discontinued
0.6937 Remote Similarity NPD3226 Approved
0.6937 Remote Similarity NPD824 Approved
0.6936 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6928 Remote Similarity NPD5408 Approved
0.6928 Remote Similarity NPD5404 Approved
0.6928 Remote Similarity NPD5405 Approved
0.6928 Remote Similarity NPD5406 Approved
0.6923 Remote Similarity NPD3496 Discontinued
0.6912 Remote Similarity NPD3022 Approved
0.6912 Remote Similarity NPD3021 Approved
0.6903 Remote Similarity NPD1652 Phase 2
0.6903 Remote Similarity NPD2654 Approved
0.6901 Remote Similarity NPD4196 Clinical (unspecified phase)
0.6899 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6893 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6889 Remote Similarity NPD9263 Approved
0.6889 Remote Similarity NPD1358 Approved
0.6889 Remote Similarity NPD9267 Approved
0.6889 Remote Similarity NPD9264 Approved
0.6887 Remote Similarity NPD1933 Approved
0.6886 Remote Similarity NPD7229 Phase 3
0.6879 Remote Similarity NPD5536 Phase 2
0.6875 Remote Similarity NPD3705 Approved
0.6871 Remote Similarity NPD1006 Clinical (unspecified phase)
0.6871 Remote Similarity NPD1019 Discontinued
0.6863 Remote Similarity NPD4308 Phase 3
0.6861 Remote Similarity NPD2181 Clinical (unspecified phase)
0.686 Remote Similarity NPD7039 Approved
0.686 Remote Similarity NPD7240 Approved
0.686 Remote Similarity NPD7038 Approved
0.6859 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6859 Remote Similarity NPD4110 Phase 3
0.6852 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6842 Remote Similarity NPD6653 Approved
0.6835 Remote Similarity NPD1241 Discontinued
0.6832 Remote Similarity NPD7458 Discontinued
0.6828 Remote Similarity NPD1481 Phase 2
0.6828 Remote Similarity NPD3972 Approved
0.6824 Remote Similarity NPD9569 Approved
0.6824 Remote Similarity NPD3751 Discontinued
0.6815 Remote Similarity NPD2354 Approved
0.6815 Remote Similarity NPD3134 Approved
0.6803 Remote Similarity NPD2797 Approved
0.6803 Remote Similarity NPD1164 Approved
0.68 Remote Similarity NPD1296 Phase 2
0.68 Remote Similarity NPD3268 Approved
0.68 Remote Similarity NPD6798 Discontinued
0.68 Remote Similarity NPD2313 Discontinued
0.6791 Remote Similarity NPD164 Approved
0.6781 Remote Similarity NPD2983 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data