Natural Product: NPC84349

Natural Product ID:  NPC84349
Common Name:   Gardenoin C
IUPAC Name:  
Synonyms:   Gardenoin C
Molecular Formula:   C31H42O6
Standard InCHIKey:  FJVVMVXJORAJAZ-WIOZPYIDSA-N
Standard InCHI:  InChI=1S/C31H42O6/c1-17-13-20(36-15-17)14-18(2)21-7-9-29(5)26-24(33)25-23(19(3)27(34)37-25)30(10-8-22(32)35-6)16-31(26,30)12-11-28(21,29)4/h13,15,18,21,23-26,33H,3,7-12,14,16H2,1-2,4-6H3/t18-,21-,23-,24+,25+,26+,28-,29+,30-,31+/m1/s1
Canonical SMILES:  COC(=O)CC[C@@]12C[C@@]32CC[C@]2([C@@]([C@@H]3[C@H]([C@@H]3[C@H]1C(=C)C(=O)O3)O)(C)CC[C@@H]2[C@@H](Cc1occ(c1)C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota Exudates PMID[20028108]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT323 Cell Line SW-620 Homo sapiens IC50 = 2.5 ug/ml 19805556
NPT845 Cell Line BT-474 Homo sapiens IC50 > 5 ug/ml 22037378
NPT65 Cell Line HepG2 Homo sapiens IC50 = 2.8 ug/ml 26327273
NPT2 Others Unspecified IC50 = 4.4 ug/ml 22902655
NPT2 Others Unspecified IC50 > 5 ug/ml 22902655

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC84349 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9396 High Similarity NPC93666
0.9195 High Similarity NPC56731
0.9156 High Similarity NPC296807
0.9156 High Similarity NPC141538
0.9156 High Similarity NPC155939
0.915 High Similarity NPC294511
0.915 High Similarity NPC121615
0.9026 High Similarity NPC470996
0.902 High Similarity NPC196846
0.8954 High Similarity NPC234494
0.8931 High Similarity NPC283209
0.8917 High Similarity NPC194499
0.8896 High Similarity NPC228842
0.8868 High Similarity NPC471003
0.8831 High Similarity NPC471001
0.8824 High Similarity NPC71821
0.8812 High Similarity NPC285567
0.8797 High Similarity NPC7059
0.8797 High Similarity NPC88007
0.8797 High Similarity NPC197137
0.879 High Similarity NPC92979
0.8782 High Similarity NPC33938
0.8782 High Similarity NPC246164
0.8774 High Similarity NPC470997
0.8765 High Similarity NPC310572
0.875 High Similarity NPC470792
0.875 High Similarity NPC68848
0.875 High Similarity NPC18986
0.875 High Similarity NPC79571
0.8726 High Similarity NPC34421
0.8726 High Similarity NPC237259
0.8726 High Similarity NPC98206
0.872 High Similarity NPC475641
0.872 High Similarity NPC475237
0.8701 High Similarity NPC471174
0.8701 High Similarity NPC216755
0.8688 High Similarity NPC8389
0.8688 High Similarity NPC287559
0.8679 High Similarity NPC195954
0.8679 High Similarity NPC304692
0.8662 High Similarity NPC268905
0.8659 High Similarity NPC118086
0.8654 High Similarity NPC212257
0.8645 High Similarity NPC471007
0.8642 High Similarity NPC261184
0.8636 High Similarity NPC470999
0.8634 High Similarity NPC188649
0.8625 High Similarity NPC475226
0.8625 High Similarity NPC472671
0.8616 High Similarity NPC104736
0.859 High Similarity NPC69647
0.859 High Similarity NPC125182
0.859 High Similarity NPC472654
0.8589 High Similarity NPC121995
0.8581 High Similarity NPC302987
0.858 High Similarity NPC288602
0.858 High Similarity NPC88841
0.8562 High Similarity NPC470119
0.8562 High Similarity NPC475066
0.8562 High Similarity NPC470118
0.8562 High Similarity NPC214495
0.8544 High Similarity NPC471002
0.8509 High Similarity NPC474611
0.8506 High Similarity NPC251865
0.85 High Similarity NPC41880
0.8494 Intermediate Similarity NPC285227
0.8491 Intermediate Similarity NPC114880
0.8491 Intermediate Similarity NPC253201
0.8491 Intermediate Similarity NPC302054
0.8485 Intermediate Similarity NPC472673
0.8485 Intermediate Similarity NPC296558
0.8481 Intermediate Similarity NPC471000
0.8481 Intermediate Similarity NPC116717
0.8481 Intermediate Similarity NPC291150
0.8476 Intermediate Similarity NPC475779
0.8476 Intermediate Similarity NPC277618
0.8471 Intermediate Similarity NPC470998
0.8471 Intermediate Similarity NPC211625
0.8471 Intermediate Similarity NPC195325
0.8462 Intermediate Similarity NPC255414
0.8462 Intermediate Similarity NPC11062
0.8447 Intermediate Similarity NPC299038
0.8447 Intermediate Similarity NPC472776
0.8447 Intermediate Similarity NPC472778
0.8447 Intermediate Similarity NPC472777
0.8434 Intermediate Similarity NPC470995
0.8428 Intermediate Similarity NPC472672
0.8421 Intermediate Similarity NPC202260
0.8418 Intermediate Similarity NPC5180
0.8415 Intermediate Similarity NPC27541
0.8415 Intermediate Similarity NPC62692
0.8415 Intermediate Similarity NPC61967
0.8415 Intermediate Similarity NPC126984
0.8395 Intermediate Similarity NPC116639
0.8395 Intermediate Similarity NPC475967
0.8395 Intermediate Similarity NPC472823
0.8377 Intermediate Similarity NPC263337
0.8377 Intermediate Similarity NPC121158
0.8366 Intermediate Similarity NPC56197
0.8365 Intermediate Similarity NPC18135
0.8365 Intermediate Similarity NPC272590
0.8364 Intermediate Similarity NPC307781
0.8364 Intermediate Similarity NPC472670
0.8354 Intermediate Similarity NPC471168
0.8344 Intermediate Similarity NPC470789
0.8333 Intermediate Similarity NPC469847
0.8333 Intermediate Similarity NPC34056
0.8333 Intermediate Similarity NPC185456
0.8333 Intermediate Similarity NPC5676
0.8323 Intermediate Similarity NPC25351
0.8323 Intermediate Similarity NPC75310
0.8313 Intermediate Similarity NPC270312
0.8313 Intermediate Similarity NPC182427
0.8313 Intermediate Similarity NPC29695
0.8313 Intermediate Similarity NPC472651
0.8313 Intermediate Similarity NPC75906
0.8313 Intermediate Similarity NPC308205
0.8313 Intermediate Similarity NPC322546
0.8303 Intermediate Similarity NPC56358
0.8293 Intermediate Similarity NPC472668
0.8293 Intermediate Similarity NPC5741
0.8291 Intermediate Similarity NPC19747
0.8289 Intermediate Similarity NPC170604
0.8289 Intermediate Similarity NPC215109
0.8282 Intermediate Similarity NPC140952
0.828 Intermediate Similarity NPC62799
0.8278 Intermediate Similarity NPC476947
0.8274 Intermediate Similarity NPC159232
0.8274 Intermediate Similarity NPC294512
0.8269 Intermediate Similarity NPC238843
0.8269 Intermediate Similarity NPC199044
0.8266 Intermediate Similarity NPC247563
0.8266 Intermediate Similarity NPC242068
0.8266 Intermediate Similarity NPC105395
0.8263 Intermediate Similarity NPC472766
0.8263 Intermediate Similarity NPC472765
0.8263 Intermediate Similarity NPC472652
0.8263 Intermediate Similarity NPC271235
0.8261 Intermediate Similarity NPC471863
0.8253 Intermediate Similarity NPC472141
0.8247 Intermediate Similarity NPC67003
0.8247 Intermediate Similarity NPC148374
0.8242 Intermediate Similarity NPC476035
0.8242 Intermediate Similarity NPC475039
0.8242 Intermediate Similarity NPC472773
0.8242 Intermediate Similarity NPC472669
0.8242 Intermediate Similarity NPC14499
0.8232 Intermediate Similarity NPC472299
0.8228 Intermediate Similarity NPC224418
0.8221 Intermediate Similarity NPC81405
0.821 Intermediate Similarity NPC214541
0.821 Intermediate Similarity NPC44675
0.8205 Intermediate Similarity NPC470273
0.8205 Intermediate Similarity NPC243577
0.8205 Intermediate Similarity NPC205071
0.8204 Intermediate Similarity NPC472764
0.8204 Intermediate Similarity NPC476850
0.8204 Intermediate Similarity NPC41689
0.8204 Intermediate Similarity NPC476861
0.8199 Intermediate Similarity NPC475777
0.8198 Intermediate Similarity NPC470938
0.8193 Intermediate Similarity NPC472664
0.8193 Intermediate Similarity NPC123088
0.8193 Intermediate Similarity NPC276551
0.8187 Intermediate Similarity NPC156189
0.8187 Intermediate Similarity NPC472665
0.8182 Intermediate Similarity NPC69028
0.8182 Intermediate Similarity NPC5079
0.8182 Intermediate Similarity NPC200782
0.8182 Intermediate Similarity NPC472771
0.8182 Intermediate Similarity NPC471166
0.8182 Intermediate Similarity NPC471167
0.8182 Intermediate Similarity NPC90953
0.8176 Intermediate Similarity NPC471437
0.8176 Intermediate Similarity NPC236004
0.8176 Intermediate Similarity NPC94763
0.8176 Intermediate Similarity NPC469576
0.8171 Intermediate Similarity NPC307383
0.817 Intermediate Similarity NPC307401
0.8165 Intermediate Similarity NPC471292
0.8155 Intermediate Similarity NPC471397
0.8155 Intermediate Similarity NPC255787
0.8153 Intermediate Similarity NPC84479
0.8148 Intermediate Similarity NPC178932
0.8148 Intermediate Similarity NPC57998
0.8146 Intermediate Similarity NPC293253
0.8146 Intermediate Similarity NPC218838
0.8144 Intermediate Similarity NPC214600
0.8144 Intermediate Similarity NPC470875
0.8144 Intermediate Similarity NPC86800
0.8141 Intermediate Similarity NPC52412
0.8133 Intermediate Similarity NPC292389
0.8133 Intermediate Similarity NPC469338
0.8133 Intermediate Similarity NPC472139
0.8133 Intermediate Similarity NPC234660
0.8133 Intermediate Similarity NPC165218
0.8133 Intermediate Similarity NPC477405
0.8133 Intermediate Similarity NPC51568
0.8129 Intermediate Similarity NPC469633
0.8129 Intermediate Similarity NPC56953

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC84349 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8129 Intermediate Similarity NPD6765 Approved
0.8129 Intermediate Similarity NPD6764 Approved
0.8103 Intermediate Similarity NPD8434 Phase 2
0.8098 Intermediate Similarity NPD5761 Phase 2
0.8098 Intermediate Similarity NPD5760 Phase 2
0.8025 Intermediate Similarity NPD4628 Phase 3
0.7943 Intermediate Similarity NPD6785 Approved
0.7943 Intermediate Similarity NPD6784 Approved
0.7798 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7706 Intermediate Similarity NPD8127 Discontinued
0.7669 Intermediate Similarity NPD6273 Approved
0.761 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD5762 Approved
0.75 Intermediate Similarity NPD5763 Approved
0.7405 Intermediate Similarity NPD6355 Discontinued
0.7381 Intermediate Similarity NPD6599 Discontinued
0.7353 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7321 Intermediate Similarity NPD7458 Discontinued
0.7301 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD7199 Phase 2
0.7289 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD7236 Approved
0.7267 Intermediate Similarity NPD2799 Discontinued
0.7256 Intermediate Similarity NPD4110 Phase 3
0.7256 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7253 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7251 Intermediate Similarity NPD7819 Suspended
0.7225 Intermediate Similarity NPD7075 Discontinued
0.7222 Intermediate Similarity NPD6559 Discontinued
0.7178 Intermediate Similarity NPD1471 Phase 3
0.717 Intermediate Similarity NPD8032 Phase 2
0.7168 Intermediate Similarity NPD4965 Approved
0.7168 Intermediate Similarity NPD4967 Phase 2
0.7168 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7168 Intermediate Similarity NPD4966 Approved
0.7151 Intermediate Similarity NPD5844 Phase 1
0.7127 Intermediate Similarity NPD7685 Pre-registration
0.7126 Intermediate Similarity NPD6799 Approved
0.7125 Intermediate Similarity NPD4140 Approved
0.7119 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7101 Intermediate Similarity NPD920 Approved
0.7093 Intermediate Similarity NPD6801 Discontinued
0.7086 Intermediate Similarity NPD919 Approved
0.7086 Intermediate Similarity NPD6234 Discontinued
0.7081 Intermediate Similarity NPD5735 Approved
0.7076 Intermediate Similarity NPD7028 Phase 2
0.7073 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD6002 Phase 3
0.7073 Intermediate Similarity NPD6005 Phase 3
0.7073 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD6004 Phase 3
0.7073 Intermediate Similarity NPD2344 Approved
0.7073 Intermediate Similarity NPD2346 Discontinued
0.707 Intermediate Similarity NPD5647 Approved
0.7069 Intermediate Similarity NPD3882 Suspended
0.7059 Intermediate Similarity NPD7239 Suspended
0.705 Intermediate Similarity NPD8404 Phase 2
0.7048 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD5494 Approved
0.7032 Intermediate Similarity NPD1608 Approved
0.7024 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD3226 Approved
0.7018 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7228 Approved
0.7 Intermediate Similarity NPD3818 Discontinued
0.7 Intermediate Similarity NPD7799 Discontinued
0.6994 Remote Similarity NPD37 Approved
0.6982 Remote Similarity NPD642 Clinical (unspecified phase)
0.6982 Remote Similarity NPD2532 Approved
0.6982 Remote Similarity NPD2534 Approved
0.6982 Remote Similarity NPD2533 Approved
0.6964 Remote Similarity NPD643 Clinical (unspecified phase)
0.6959 Remote Similarity NPD7497 Discontinued
0.6957 Remote Similarity NPD8312 Approved
0.6957 Remote Similarity NPD8313 Approved
0.6954 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6946 Remote Similarity NPD8166 Discontinued
0.6946 Remote Similarity NPD7003 Approved
0.6944 Remote Similarity NPD7473 Discontinued
0.6943 Remote Similarity NPD1876 Approved
0.6933 Remote Similarity NPD6653 Approved
0.6932 Remote Similarity NPD3749 Approved
0.6923 Remote Similarity NPD3972 Approved
0.6914 Remote Similarity NPD3817 Phase 2
0.6909 Remote Similarity NPD6099 Approved
0.6909 Remote Similarity NPD6100 Approved
0.6905 Remote Similarity NPD2309 Approved
0.6897 Remote Similarity NPD1934 Approved
0.6894 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6894 Remote Similarity NPD2313 Discontinued
0.6894 Remote Similarity NPD6798 Discontinued
0.6889 Remote Similarity NPD4575 Clinical (unspecified phase)
0.6886 Remote Similarity NPD1243 Approved
0.6885 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6879 Remote Similarity NPD4380 Phase 2
0.6855 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6852 Remote Similarity NPD6663 Approved
0.6848 Remote Similarity NPD7240 Approved
0.6848 Remote Similarity NPD7033 Discontinued
0.6845 Remote Similarity NPD3750 Approved
0.6839 Remote Similarity NPD7411 Suspended
0.6839 Remote Similarity NPD17 Approved
0.6836 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6832 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6832 Remote Similarity NPD7095 Approved
0.6826 Remote Similarity NPD970 Clinical (unspecified phase)
0.6818 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6818 Remote Similarity NPD5402 Approved
0.6816 Remote Similarity NPD1247 Approved
0.6813 Remote Similarity NPD9494 Approved
0.681 Remote Similarity NPD4060 Phase 1
0.6807 Remote Similarity NPD2796 Approved
0.6807 Remote Similarity NPD1551 Phase 2
0.6805 Remote Similarity NPD3887 Approved
0.6805 Remote Similarity NPD2354 Approved
0.6802 Remote Similarity NPD5403 Approved
0.6802 Remote Similarity NPD6980 Clinical (unspecified phase)
0.679 Remote Similarity NPD3268 Approved
0.679 Remote Similarity NPD3764 Approved
0.6789 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6786 Remote Similarity NPD2800 Approved
0.6784 Remote Similarity NPD5401 Approved
0.6778 Remote Similarity NPD7315 Approved
0.6778 Remote Similarity NPD6232 Discontinued
0.6774 Remote Similarity NPD5585 Approved
0.6772 Remote Similarity NPD8397 Clinical (unspecified phase)
0.677 Remote Similarity NPD6832 Phase 2
0.6761 Remote Similarity NPD1465 Phase 2
0.6761 Remote Similarity NPD2801 Approved
0.6747 Remote Similarity NPD3748 Approved
0.674 Remote Similarity NPD3926 Phase 2
0.6739 Remote Similarity NPD7074 Phase 3
0.6735 Remote Similarity NPD3057 Approved
0.6731 Remote Similarity NPD1778 Approved
0.673 Remote Similarity NPD1283 Approved
0.6727 Remote Similarity NPD6353 Approved
0.6726 Remote Similarity NPD1549 Phase 2
0.6726 Remote Similarity NPD4534 Discontinued
0.6726 Remote Similarity NPD5958 Discontinued
0.6724 Remote Similarity NPD2651 Approved
0.6724 Remote Similarity NPD2649 Approved
0.6723 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6718 Remote Similarity NPD4107 Approved
0.6708 Remote Similarity NPD5736 Approved
0.6707 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6707 Remote Similarity NPD2935 Discontinued
0.6707 Remote Similarity NPD2438 Suspended
0.6707 Remote Similarity NPD3620 Phase 2
0.6703 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6703 Remote Similarity NPD6166 Phase 2
0.6703 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6687 Remote Similarity NPD7097 Phase 1
0.6687 Remote Similarity NPD2797 Approved
0.6686 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6685 Remote Similarity NPD7229 Phase 3
0.6685 Remote Similarity NPD7057 Phase 3
0.6685 Remote Similarity NPD7054 Approved
0.6685 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6685 Remote Similarity NPD7058 Phase 2
0.6685 Remote Similarity NPD6808 Phase 2
0.6685 Remote Similarity NPD7768 Phase 2
0.6667 Remote Similarity NPD5327 Phase 3
0.6667 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6667 Remote Similarity NPD230 Phase 1
0.6667 Remote Similarity NPD8150 Discontinued
0.6667 Remote Similarity NPD8455 Phase 2
0.6667 Remote Similarity NPD447 Suspended
0.665 Remote Similarity NPD3533 Approved
0.665 Remote Similarity NPD2972 Approved
0.665 Remote Similarity NPD2491 Approved
0.6649 Remote Similarity NPD8407 Phase 2
0.6649 Remote Similarity NPD7472 Approved
0.6648 Remote Similarity NPD6386 Approved
0.6648 Remote Similarity NPD6385 Approved
0.6648 Remote Similarity NPD6677 Suspended
0.6647 Remote Similarity NPD4308 Phase 3
0.6647 Remote Similarity NPD5049 Phase 3
0.6647 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6646 Remote Similarity NPD2798 Approved
0.6646 Remote Similarity NPD6233 Phase 2
0.6646 Remote Similarity NPD4062 Phase 3
0.6631 Remote Similarity NPD4338 Clinical (unspecified phase)
0.663 Remote Similarity NPD6620 Discovery
0.663 Remote Similarity NPD3751 Discontinued
0.663 Remote Similarity NPD2163 Approved
0.663 Remote Similarity NPD6959 Discontinued
0.663 Remote Similarity NPD7177 Discontinued
0.6627 Remote Similarity NPD2424 Discontinued
0.6624 Remote Similarity NPD3412 Clinical (unspecified phase)
0.6623 Remote Similarity NPD7157 Approved
0.6612 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6611 Remote Similarity NPD6315 Phase 2
0.6607 Remote Similarity NPD4477 Approved
0.6607 Remote Similarity NPD4476 Approved
0.6606 Remote Similarity NPD2979 Phase 3
0.6603 Remote Similarity NPD9545 Approved
0.6599 Remote Similarity NPD4482 Phase 3
0.6593 Remote Similarity NPD3787 Discontinued

Structure

External Identifiers

PubChem CID   44627503
ChEMBL   CHEMBL1076828
ZINC  

Physicochemical Properties

Molecular Weight:  510.30
ALogP:  1.0595
MLogP:  4.21
XLogP:  6.981
# Rotatable Bonds:  13
Polar Surface Area:  85.97
# H-Bond Aceptor:  5
# H-Bond Donor:  1
# Rings:  6
# Heavy Atoms:  37

Download Data

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Biological Activities  
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