Natural Product: NPC18986

Natural Product ID:  NPC18986
Common Name:   Bonducellpin F
IUPAC Name:   [(4aR,5S,6R,6aR,11aS,11bR)-4a,5-dihydroxy-4,4,11b-trimethyl-7-methylidene-1-oxo-3,5,6,6a,11,11a-hexahydro-2H-naphtho[2,1-f][1]benzofuran-6-yl] acetate
Synonyms:   Bonducellpin F
Molecular Formula:   C22H28O6
Standard InCHIKey:  XKTJWVAVUXZAPA-ISSLHIBUSA-N
Standard InCHI:  InChI=1S/C22H28O6/c1-11-13-7-9-27-15(13)10-14-17(11)18(28-12(2)23)19(25)22(26)20(3,4)8-6-16(24)21(14,22)5/h7,9,14,17-19,25-26H,1,6,8,10H2,2-5H3/t14-,17-,18+,19-,21-,22+/m0/s1
Canonical SMILES:  CC(=O)O[C@@H]1[C@H]2C(=C)c3ccoc3C[C@@H]2[C@@]2([C@]([C@H]1O)(O)C(C)(C)CCC2=O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO29844 Caesalpinia bonduc Species Fabaceae Eukaryota seed kernels Amphur Sanamchaikate, Chachoengsao Province, Thailand 2005-JUN PMID[17848088]
NPO13248 Pistacia mexicana Species Anacardiaceae Eukaryota UNPD*
NPO7886 Eria tomentosa Species Orchidaceae Eukaryota UNPD*
NPO11853 Eucalyptus froggattii Species Myrtaceae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 5800 nM 17848088

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC18986 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9805 High Similarity NPC121995
0.9673 High Similarity NPC287559
0.9548 High Similarity NPC283209
0.9542 High Similarity NPC194499
0.9487 High Similarity NPC56358
0.9484 High Similarity NPC68848
0.9484 High Similarity NPC188649
0.9481 High Similarity NPC140952
0.9423 High Similarity NPC285567
0.9423 High Similarity NPC88841
0.9423 High Similarity NPC288602
0.9416 High Similarity NPC88007
0.9416 High Similarity NPC81405
0.9408 High Similarity NPC294511
0.9408 High Similarity NPC121615
0.9404 High Similarity NPC228842
0.9367 High Similarity NPC270312
0.9359 High Similarity NPC79571
0.9308 High Similarity NPC296558
0.9295 High Similarity NPC8389
0.929 High Similarity NPC195954
0.929 High Similarity NPC304692
0.9276 High Similarity NPC212257
0.9231 High Similarity NPC474611
0.9226 High Similarity NPC41880
0.9226 High Similarity NPC104736
0.9177 High Similarity NPC472773
0.9167 High Similarity NPC7059
0.9114 High Similarity NPC472771
0.9085 High Similarity NPC211625
0.9079 High Similarity NPC71821
0.9062 High Similarity NPC475779
0.9062 High Similarity NPC277618
0.9038 High Similarity NPC75310
0.9006 High Similarity NPC472774
0.9006 High Similarity NPC472775
0.9 High Similarity NPC276551
0.8987 High Similarity NPC475967
0.8974 High Similarity NPC114880
0.897 High Similarity NPC472665
0.8961 High Similarity NPC69647
0.8961 High Similarity NPC125182
0.8957 High Similarity NPC475641
0.8957 High Similarity NPC475237
0.8951 High Similarity NPC160651
0.8951 High Similarity NPC471397
0.8944 High Similarity NPC470875
0.8938 High Similarity NPC477405
0.8938 High Similarity NPC292389
0.8938 High Similarity NPC469338
0.8924 High Similarity NPC299038
0.8924 High Similarity NPC472772
0.8917 High Similarity NPC264943
0.891 High Similarity NPC475777
0.8889 High Similarity NPC173516
0.8889 High Similarity NPC472282
0.8882 High Similarity NPC470940
0.8882 High Similarity NPC469849
0.8875 High Similarity NPC200782
0.8875 High Similarity NPC69028
0.8875 High Similarity NPC329938
0.8875 High Similarity NPC263432
0.8874 High Similarity NPC263337
0.8854 High Similarity NPC178932
0.8841 High Similarity NPC294512
0.8834 High Similarity NPC255787
0.8831 High Similarity NPC255414
0.8812 High Similarity NPC477402
0.8805 High Similarity NPC472777
0.8805 High Similarity NPC472778
0.8805 High Similarity NPC167142
0.8805 High Similarity NPC472776
0.8797 High Similarity NPC469336
0.8797 High Similarity NPC92979
0.879 High Similarity NPC75906
0.879 High Similarity NPC268905
0.878 High Similarity NPC470995
0.8774 High Similarity NPC19747
0.8773 High Similarity NPC473753
0.8773 High Similarity NPC473766
0.8766 High Similarity NPC233763
0.8766 High Similarity NPC62799
0.8765 High Similarity NPC476857
0.8765 High Similarity NPC476858
0.8765 High Similarity NPC472664
0.8765 High Similarity NPC476856
0.8758 High Similarity NPC82851
0.875 High Similarity NPC84349
0.875 High Similarity NPC473368
0.872 High Similarity NPC271235
0.8712 High Similarity NPC23387
0.8712 High Similarity NPC86800
0.8712 High Similarity NPC308156
0.8704 High Similarity NPC302369
0.8704 High Similarity NPC476035
0.8704 High Similarity NPC134254
0.8704 High Similarity NPC476197
0.8704 High Similarity NPC475039
0.8704 High Similarity NPC39986
0.8704 High Similarity NPC14499
0.8701 High Similarity NPC5676
0.8696 High Similarity NPC25255
0.8696 High Similarity NPC335761
0.8693 High Similarity NPC243577
0.8688 High Similarity NPC261597
0.8683 High Similarity NPC56953
0.8683 High Similarity NPC176413
0.8679 High Similarity NPC44675
0.8679 High Similarity NPC155939
0.8679 High Similarity NPC296807
0.8679 High Similarity NPC214541
0.8679 High Similarity NPC141538
0.8675 High Similarity NPC202260
0.8671 High Similarity NPC476201
0.8671 High Similarity NPC469503
0.8667 High Similarity NPC118086
0.8662 High Similarity NPC477404
0.8662 High Similarity NPC196864
0.8659 High Similarity NPC476850
0.8659 High Similarity NPC476853
0.8659 High Similarity NPC41689
0.8659 High Similarity NPC476861
0.8659 High Similarity NPC310572
0.865 High Similarity NPC123088
0.865 High Similarity NPC276735
0.865 High Similarity NPC271657
0.865 High Similarity NPC470182
0.865 High Similarity NPC476860
0.8642 High Similarity NPC470939
0.8642 High Similarity NPC193798
0.8642 High Similarity NPC470792
0.8642 High Similarity NPC18347
0.8642 High Similarity NPC149896
0.8642 High Similarity NPC5079
0.8634 High Similarity NPC472823
0.8634 High Similarity NPC477403
0.8634 High Similarity NPC475226
0.8634 High Similarity NPC123153
0.8634 High Similarity NPC307383
0.8625 High Similarity NPC469485
0.8618 High Similarity NPC148374
0.8616 High Similarity NPC98206
0.8616 High Similarity NPC237259
0.8616 High Similarity NPC302054
0.8616 High Similarity NPC282445
0.8616 High Similarity NPC34421
0.8616 High Similarity NPC253201
0.8606 High Similarity NPC291742
0.8606 High Similarity NPC472766
0.8606 High Similarity NPC472765
0.8599 High Similarity NPC234494
0.8599 High Similarity NPC472654
0.8599 High Similarity NPC195325
0.8598 High Similarity NPC472141
0.8598 High Similarity NPC97574
0.8598 High Similarity NPC93172
0.859 High Similarity NPC286038
0.859 High Similarity NPC216755
0.8589 High Similarity NPC51568
0.8589 High Similarity NPC234660
0.858 High Similarity NPC472299
0.858 High Similarity NPC472653
0.8571 High Similarity NPC197137
0.8571 High Similarity NPC249021
0.8571 High Similarity NPC187149
0.8571 High Similarity NPC64568
0.8571 High Similarity NPC45101
0.8571 High Similarity NPC173544
0.8571 High Similarity NPC36655
0.8562 High Similarity NPC35000
0.8562 High Similarity NPC476262
0.8554 High Similarity NPC44602
0.8554 High Similarity NPC302392
0.8553 High Similarity NPC472672
0.8553 High Similarity NPC33938
0.8553 High Similarity NPC246164
0.8553 High Similarity NPC470996
0.8547 High Similarity NPC472662
0.8547 High Similarity NPC472663
0.8545 High Similarity NPC472651
0.8545 High Similarity NPC472764
0.8545 High Similarity NPC472784
0.8544 High Similarity NPC159927
0.8544 High Similarity NPC470997
0.8544 High Similarity NPC469335
0.8543 High Similarity NPC307401
0.8537 High Similarity NPC261184
0.8535 High Similarity NPC66991
0.8528 High Similarity NPC471003
0.8528 High Similarity NPC207978
0.8526 High Similarity NPC97904
0.8519 High Similarity NPC299094
0.8519 High Similarity NPC10051
0.8516 High Similarity NPC476944
0.8516 High Similarity NPC251865
0.8516 High Similarity NPC84479
0.8512 High Similarity NPC471437
0.8509 High Similarity NPC60973
0.8509 High Similarity NPC263265
0.8509 High Similarity NPC107646

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC18986 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8869 High Similarity NPD8434 Phase 2
0.8333 Intermediate Similarity NPD5761 Phase 2
0.8333 Intermediate Similarity NPD5760 Phase 2
0.8153 Intermediate Similarity NPD4628 Phase 3
0.814 Intermediate Similarity NPD6765 Approved
0.814 Intermediate Similarity NPD6764 Approved
0.8133 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7955 Intermediate Similarity NPD6784 Approved
0.7955 Intermediate Similarity NPD6785 Approved
0.7927 Intermediate Similarity NPD6599 Discontinued
0.7892 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7862 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7829 Intermediate Similarity NPD6559 Discontinued
0.7784 Intermediate Similarity NPD7819 Suspended
0.7771 Intermediate Similarity NPD7411 Suspended
0.7758 Intermediate Similarity NPD3226 Approved
0.7751 Intermediate Similarity NPD3749 Approved
0.7751 Intermediate Similarity NPD7075 Discontinued
0.7725 Intermediate Similarity NPD6801 Discontinued
0.7683 Intermediate Similarity NPD6273 Approved
0.7669 Intermediate Similarity NPD6799 Approved
0.7661 Intermediate Similarity NPD5494 Approved
0.7657 Intermediate Similarity NPD5844 Phase 1
0.7636 Intermediate Similarity NPD920 Approved
0.7633 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD1471 Phase 3
0.7622 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7602 Intermediate Similarity NPD919 Approved
0.76 Intermediate Similarity NPD3818 Discontinued
0.759 Intermediate Similarity NPD8404 Phase 2
0.7588 Intermediate Similarity NPD3882 Suspended
0.7588 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7574 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7556 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7543 Intermediate Similarity NPD7473 Discontinued
0.7529 Intermediate Similarity NPD3817 Phase 2
0.7515 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7515 Intermediate Similarity NPD1934 Approved
0.7514 Intermediate Similarity NPD1247 Approved
0.7514 Intermediate Similarity NPD8127 Discontinued
0.75 Intermediate Similarity NPD4380 Phase 2
0.75 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2799 Discontinued
0.7486 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7471 Intermediate Similarity NPD6232 Discontinued
0.7453 Intermediate Similarity NPD2796 Approved
0.7446 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD8313 Approved
0.7444 Intermediate Similarity NPD8312 Approved
0.7442 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.744 Intermediate Similarity NPD7458 Discontinued
0.7427 Intermediate Similarity NPD5402 Approved
0.7425 Intermediate Similarity NPD5403 Approved
0.7414 Intermediate Similarity NPD7199 Phase 2
0.7412 Intermediate Similarity NPD37 Approved
0.741 Intermediate Similarity NPD5401 Approved
0.741 Intermediate Similarity NPD2534 Approved
0.741 Intermediate Similarity NPD2532 Approved
0.741 Intermediate Similarity NPD2533 Approved
0.7407 Intermediate Similarity NPD2346 Discontinued
0.7401 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD7033 Discontinued
0.7386 Intermediate Similarity NPD6166 Phase 2
0.7386 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7386 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7384 Intermediate Similarity NPD4966 Approved
0.7384 Intermediate Similarity NPD4965 Approved
0.7384 Intermediate Similarity NPD4967 Phase 2
0.7378 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD2801 Approved
0.7362 Intermediate Similarity NPD1549 Phase 2
0.7346 Intermediate Similarity NPD1551 Phase 2
0.7337 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7321 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD1243 Approved
0.7305 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7303 Intermediate Similarity NPD3751 Discontinued
0.7301 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD2344 Approved
0.7299 Intermediate Similarity NPD6234 Discontinued
0.7289 Intermediate Similarity NPD7236 Approved
0.7283 Intermediate Similarity NPD7768 Phase 2
0.7278 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD3787 Discontinued
0.7273 Intermediate Similarity NPD3750 Approved
0.7256 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD6099 Approved
0.7239 Intermediate Similarity NPD6100 Approved
0.7233 Intermediate Similarity NPD3268 Approved
0.7233 Intermediate Similarity NPD3764 Approved
0.7233 Intermediate Similarity NPD2313 Discontinued
0.7232 Intermediate Similarity NPD3926 Phase 2
0.7232 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7228 Intermediate Similarity NPD8150 Discontinued
0.7222 Intermediate Similarity NPD7074 Phase 3
0.7216 Intermediate Similarity NPD6959 Discontinued
0.7213 Intermediate Similarity NPD8407 Phase 2
0.7212 Intermediate Similarity NPD2800 Approved
0.7207 Intermediate Similarity NPD7799 Discontinued
0.7205 Intermediate Similarity NPD6355 Discontinued
0.7198 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7178 Intermediate Similarity NPD3748 Approved
0.7178 Intermediate Similarity NPD1510 Phase 2
0.7175 Intermediate Similarity NPD6808 Phase 2
0.7169 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7169 Intermediate Similarity NPD4110 Phase 3
0.7169 Intermediate Similarity NPD7003 Approved
0.7167 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7167 Intermediate Similarity NPD7054 Approved
0.7161 Intermediate Similarity NPD1608 Approved
0.7151 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD4140 Approved
0.7143 Intermediate Similarity NPD8368 Discontinued
0.7143 Intermediate Similarity NPD1511 Approved
0.7127 Intermediate Similarity NPD7472 Approved
0.7126 Intermediate Similarity NPD6190 Approved
0.7126 Intermediate Similarity NPD2309 Approved
0.7125 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD6798 Discontinued
0.7111 Intermediate Similarity NPD7228 Approved
0.7091 Intermediate Similarity NPD5762 Approved
0.7091 Intermediate Similarity NPD5763 Approved
0.7089 Intermediate Similarity NPD5647 Approved
0.7088 Intermediate Similarity NPD6797 Phase 2
0.7081 Intermediate Similarity NPD8032 Phase 2
0.7079 Intermediate Similarity NPD7229 Phase 3
0.7076 Intermediate Similarity NPD7239 Suspended
0.7069 Intermediate Similarity NPD1465 Phase 2
0.7066 Intermediate Similarity NPD8166 Discontinued
0.7066 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD7095 Approved
0.7062 Intermediate Similarity NPD7435 Discontinued
0.7062 Intermediate Similarity NPD7497 Discontinued
0.7059 Intermediate Similarity NPD1512 Approved
0.7055 Intermediate Similarity NPD1607 Approved
0.7049 Intermediate Similarity NPD7251 Discontinued
0.7049 Intermediate Similarity NPD7685 Pre-registration
0.7037 Intermediate Similarity NPD1240 Approved
0.703 Intermediate Similarity NPD2935 Discontinued
0.7025 Intermediate Similarity NPD3267 Approved
0.7025 Intermediate Similarity NPD3266 Approved
0.7011 Intermediate Similarity NPD7808 Phase 3
0.7 Intermediate Similarity NPD6832 Phase 2
0.6995 Remote Similarity NPD6777 Approved
0.6995 Remote Similarity NPD6778 Approved
0.6995 Remote Similarity NPD6782 Approved
0.6995 Remote Similarity NPD6779 Approved
0.6995 Remote Similarity NPD6780 Approved
0.6995 Remote Similarity NPD6781 Approved
0.6995 Remote Similarity NPD6776 Approved
0.6994 Remote Similarity NPD447 Suspended
0.6988 Remote Similarity NPD6002 Phase 3
0.6988 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6988 Remote Similarity NPD6005 Phase 3
0.6988 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6988 Remote Similarity NPD6004 Phase 3
0.6981 Remote Similarity NPD2798 Approved
0.6975 Remote Similarity NPD6233 Phase 2
0.6971 Remote Similarity NPD8455 Phase 2
0.697 Remote Similarity NPD4308 Phase 3
0.6968 Remote Similarity NPD8435 Approved
0.6968 Remote Similarity NPD8361 Approved
0.6968 Remote Similarity NPD8360 Approved
0.6968 Remote Similarity NPD17 Approved
0.6957 Remote Similarity NPD7240 Approved
0.6943 Remote Similarity NPD3972 Approved
0.6932 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6923 Remote Similarity NPD3057 Approved
0.6923 Remote Similarity NPD7177 Discontinued
0.6923 Remote Similarity NPD2354 Approved
0.6923 Remote Similarity NPD3887 Approved
0.6923 Remote Similarity NPD2163 Approved
0.6919 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6918 Remote Similarity NPD2797 Approved
0.6914 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6912 Remote Similarity NPD4111 Phase 1
0.6912 Remote Similarity NPD4665 Approved
0.6909 Remote Similarity NPD7097 Phase 1
0.6907 Remote Similarity NPD4107 Approved
0.6906 Remote Similarity NPD2403 Approved
0.6906 Remote Similarity NPD4575 Clinical (unspecified phase)
0.6902 Remote Similarity NPD5953 Discontinued
0.6897 Remote Similarity NPD7028 Phase 2
0.689 Remote Similarity NPD230 Phase 1
0.689 Remote Similarity NPD1933 Approved
0.689 Remote Similarity NPD5735 Approved
0.6889 Remote Similarity NPD5710 Approved
0.6889 Remote Similarity NPD5711 Approved
0.6879 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6878 Remote Similarity NPD4287 Approved
0.686 Remote Similarity NPD5619 Clinical (unspecified phase)
0.686 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6859 Remote Similarity NPD1778 Approved
0.6856 Remote Similarity NPD8285 Discontinued
0.685 Remote Similarity NPD7875 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   23642923
ChEMBL   CHEMBL252322
ZINC  

Physicochemical Properties

Molecular Weight:  388.19
ALogP:  -0.0161
MLogP:  3.22
XLogP:  1.545
# Rotatable Bonds:  8
Polar Surface Area:  96.97
# H-Bond Aceptor:  5
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  28

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs