Natural Product: NPC56731

Natural Product ID:  NPC56731
Common Name:   Gardenoin B
IUPAC Name:  
Synonyms:  
Molecular Formula:   C31H42O5
Standard InCHIKey:  XSIGSTVCMUBHQD-PDRQEGEBSA-N
Standard InCHI:  InChI=1S/C31H42O5/c1-18-13-21(35-16-18)14-19(2)22-7-9-29(5)24-15-23-26(20(3)27(33)36-23)31(10-8-25(32)34-6)17-30(24,31)12-11-28(22,29)4/h13,16,19,22-24,26H,3,7-12,14-15,17H2,1-2,4-6H3/t19-,22-,23-,24+,26-,28-,29+,30+,31-/m1/s1
Canonical SMILES:  COC(=O)CC[C@@]12C[C@@]32CC[C@]2([C@@]([C@@H]3C[C@@H]3[C@H]1C(=C)C(=O)O3)(C)CC[C@@H]2[C@@H](Cc1occ(c1)C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota Exudates PMID[20028108]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT323 Cell Line SW-620 Homo sapiens IC50 > 5 ug/ml 9917284
NPT65 Cell Line HepG2 Homo sapiens IC50 > 5 ug/ml 22309916
NPT845 Cell Line BT-474 Homo sapiens IC50 > 5 ug/ml 26213786
NPT2 Others Unspecified IC50 > 5 ug/ml PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC56731 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9786 High Similarity NPC93666
0.9195 High Similarity NPC84349
0.8889 High Similarity NPC470273
0.8865 High Similarity NPC307401
0.8811 High Similarity NPC56197
0.88 High Similarity NPC471863
0.8742 High Similarity NPC25351
0.8741 High Similarity NPC202260
0.8701 High Similarity NPC471003
0.8699 High Similarity NPC199044
0.8699 High Similarity NPC238843
0.8658 High Similarity NPC471001
0.8649 High Similarity NPC71821
0.8649 High Similarity NPC224418
0.8609 High Similarity NPC246164
0.8581 High Similarity NPC471292
0.8571 High Similarity NPC298190
0.8561 High Similarity NPC59502
0.8477 Intermediate Similarity NPC212257
0.8467 Intermediate Similarity NPC178382
0.8467 Intermediate Similarity NPC19747
0.8456 Intermediate Similarity NPC470999
0.8456 Intermediate Similarity NPC62799
0.8456 Intermediate Similarity NPC233763
0.8451 Intermediate Similarity NPC293253
0.8442 Intermediate Similarity NPC104736
0.8429 Intermediate Similarity NPC198904
0.8414 Intermediate Similarity NPC236532
0.8411 Intermediate Similarity NPC95526
0.8411 Intermediate Similarity NPC234494
0.8403 Intermediate Similarity NPC146872
0.84 Intermediate Similarity NPC471174
0.84 Intermediate Similarity NPC216755
0.8387 Intermediate Similarity NPC304692
0.8378 Intermediate Similarity NPC205071
0.8377 Intermediate Similarity NPC141538
0.8377 Intermediate Similarity NPC296807
0.8377 Intermediate Similarity NPC155939
0.8366 Intermediate Similarity NPC121615
0.8366 Intermediate Similarity NPC471002
0.8366 Intermediate Similarity NPC294511
0.8355 Intermediate Similarity NPC156189
0.8355 Intermediate Similarity NPC470997
0.8345 Intermediate Similarity NPC170604
0.8345 Intermediate Similarity NPC215109
0.8345 Intermediate Similarity NPC470742
0.8323 Intermediate Similarity NPC41880
0.8322 Intermediate Similarity NPC471006
0.8322 Intermediate Similarity NPC251865
0.8322 Intermediate Similarity NPC84479
0.831 Intermediate Similarity NPC470278
0.8301 Intermediate Similarity NPC272590
0.8301 Intermediate Similarity NPC116717
0.8301 Intermediate Similarity NPC291150
0.8301 Intermediate Similarity NPC471000
0.8289 Intermediate Similarity NPC472654
0.8289 Intermediate Similarity NPC211625
0.8278 Intermediate Similarity NPC221809
0.8273 Intermediate Similarity NPC179354
0.8269 Intermediate Similarity NPC469847
0.8267 Intermediate Similarity NPC290038
0.8267 Intermediate Similarity NPC185456
0.8261 Intermediate Similarity NPC16922
0.825 Intermediate Similarity NPC310572
0.8248 Intermediate Similarity NPC97566
0.8247 Intermediate Similarity NPC33938
0.8247 Intermediate Similarity NPC470996
0.8243 Intermediate Similarity NPC20500
0.8239 Intermediate Similarity NPC61967
0.8239 Intermediate Similarity NPC126984
0.8239 Intermediate Similarity NPC27541
0.8239 Intermediate Similarity NPC62692
0.8235 Intermediate Similarity NPC5180
0.8235 Intermediate Similarity NPC228842
0.8235 Intermediate Similarity NPC196846
0.8217 Intermediate Similarity NPC474611
0.8207 Intermediate Similarity NPC92941
0.8194 Intermediate Similarity NPC98206
0.8194 Intermediate Similarity NPC44606
0.8194 Intermediate Similarity NPC114880
0.8194 Intermediate Similarity NPC237259
0.8194 Intermediate Similarity NPC34421
0.8188 Intermediate Similarity NPC263337
0.8188 Intermediate Similarity NPC121158
0.8182 Intermediate Similarity NPC18135
0.8176 Intermediate Similarity NPC476035
0.8176 Intermediate Similarity NPC283209
0.8176 Intermediate Similarity NPC471168
0.8176 Intermediate Similarity NPC285567
0.8176 Intermediate Similarity NPC14499
0.8176 Intermediate Similarity NPC475039
0.8171 Intermediate Similarity NPC167340
0.817 Intermediate Similarity NPC195325
0.817 Intermediate Similarity NPC470791
0.817 Intermediate Similarity NPC470790
0.8169 Intermediate Similarity NPC208389
0.8163 Intermediate Similarity NPC476943
0.8158 Intermediate Similarity NPC302987
0.8153 Intermediate Similarity NPC195954
0.8153 Intermediate Similarity NPC194499
0.8153 Intermediate Similarity NPC88007
0.8153 Intermediate Similarity NPC7059
0.8146 Intermediate Similarity NPC34056
0.8141 Intermediate Similarity NPC92979
0.8133 Intermediate Similarity NPC267632
0.8133 Intermediate Similarity NPC223415
0.8129 Intermediate Similarity NPC182427
0.8129 Intermediate Similarity NPC29695
0.8129 Intermediate Similarity NPC308205
0.8129 Intermediate Similarity NPC322546
0.8125 Intermediate Similarity NPC471817
0.8125 Intermediate Similarity NPC473982
0.8125 Intermediate Similarity NPC276735
0.8125 Intermediate Similarity NPC261184
0.8117 Intermediate Similarity NPC472298
0.8113 Intermediate Similarity NPC68848
0.8113 Intermediate Similarity NPC472668
0.8113 Intermediate Similarity NPC197596
0.8108 Intermediate Similarity NPC474722
0.8108 Intermediate Similarity NPC233707
0.8108 Intermediate Similarity NPC90953
0.8105 Intermediate Similarity NPC471007
0.8101 Intermediate Similarity NPC474932
0.8099 Intermediate Similarity NPC329707
0.8098 Intermediate Similarity NPC475641
0.8098 Intermediate Similarity NPC475237
0.8095 Intermediate Similarity NPC310043
0.8085 Intermediate Similarity NPC46536
0.8085 Intermediate Similarity NPC74612
0.8085 Intermediate Similarity NPC138139
0.8082 Intermediate Similarity NPC476947
0.8071 Intermediate Similarity NPC65735
0.8071 Intermediate Similarity NPC188377
0.8069 Intermediate Similarity NPC470740
0.8063 Intermediate Similarity NPC472669
0.8058 Intermediate Similarity NPC36255
0.8056 Intermediate Similarity NPC61788
0.8056 Intermediate Similarity NPC89133
0.8054 Intermediate Similarity NPC148374
0.8052 Intermediate Similarity NPC470998
0.805 Intermediate Similarity NPC8389
0.805 Intermediate Similarity NPC287559
0.8038 Intermediate Similarity NPC470118
0.8038 Intermediate Similarity NPC1408
0.8038 Intermediate Similarity NPC197137
0.8038 Intermediate Similarity NPC81405
0.8038 Intermediate Similarity NPC246841
0.8037 Intermediate Similarity NPC88593
0.8037 Intermediate Similarity NPC118086
0.8027 Intermediate Similarity NPC214572
0.8026 Intermediate Similarity NPC247221
0.8025 Intermediate Similarity NPC75310
0.8025 Intermediate Similarity NPC473766
0.8025 Intermediate Similarity NPC473753
0.8014 Intermediate Similarity NPC471074
0.8014 Intermediate Similarity NPC230979
0.8014 Intermediate Similarity NPC473885
0.8013 Intermediate Similarity NPC268905
0.8013 Intermediate Similarity NPC470741
0.8013 Intermediate Similarity NPC75906
0.8013 Intermediate Similarity NPC472672
0.8012 Intermediate Similarity NPC472664
0.8 Intermediate Similarity NPC159927
0.8 Intermediate Similarity NPC205765
0.8 Intermediate Similarity NPC79571
0.8 Intermediate Similarity NPC469335
0.8 Intermediate Similarity NPC470792
0.8 Intermediate Similarity NPC477404
0.8 Intermediate Similarity NPC188649
0.8 Intermediate Similarity NPC18986
0.8 Intermediate Similarity NPC196864
0.8 Intermediate Similarity NPC471166
0.8 Intermediate Similarity NPC471167
0.7987 Intermediate Similarity NPC140952
0.7987 Intermediate Similarity NPC475226
0.7987 Intermediate Similarity NPC472823
0.7975 Intermediate Similarity NPC204663
0.7974 Intermediate Similarity NPC346
0.7974 Intermediate Similarity NPC262198
0.7973 Intermediate Similarity NPC310830
0.7973 Intermediate Similarity NPC42400
0.7972 Intermediate Similarity NPC112706
0.7972 Intermediate Similarity NPC476917
0.7972 Intermediate Similarity NPC207294
0.7972 Intermediate Similarity NPC327527
0.7972 Intermediate Similarity NPC477040
0.7962 Intermediate Similarity NPC253201
0.7962 Intermediate Similarity NPC302054
0.7962 Intermediate Similarity NPC10429
0.7961 Intermediate Similarity NPC476944
0.7961 Intermediate Similarity NPC142113
0.7959 Intermediate Similarity NPC209858
0.7959 Intermediate Similarity NPC324117
0.795 Intermediate Similarity NPC165218
0.795 Intermediate Similarity NPC88841
0.795 Intermediate Similarity NPC288602
0.7949 Intermediate Similarity NPC144010
0.7947 Intermediate Similarity NPC52412
0.7945 Intermediate Similarity NPC218838
0.7943 Intermediate Similarity NPC83115

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC56731 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7867 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7806 Intermediate Similarity NPD6273 Approved
0.7799 Intermediate Similarity NPD5761 Phase 2
0.7799 Intermediate Similarity NPD5760 Phase 2
0.7755 Intermediate Similarity NPD8032 Phase 2
0.7738 Intermediate Similarity NPD6765 Approved
0.7738 Intermediate Similarity NPD6764 Approved
0.7716 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7558 Intermediate Similarity NPD6784 Approved
0.7558 Intermediate Similarity NPD6785 Approved
0.7517 Intermediate Similarity NPD1876 Approved
0.7516 Intermediate Similarity NPD1471 Phase 3
0.75 Intermediate Similarity NPD2799 Discontinued
0.7414 Intermediate Similarity NPD8434 Phase 2
0.7372 Intermediate Similarity NPD4628 Phase 3
0.7343 Intermediate Similarity NPD5585 Approved
0.7315 Intermediate Similarity NPD6832 Phase 2
0.7305 Intermediate Similarity NPD8127 Discontinued
0.7303 Intermediate Similarity NPD6355 Discontinued
0.729 Intermediate Similarity NPD2346 Discontinued
0.726 Intermediate Similarity NPD3972 Approved
0.7237 Intermediate Similarity NPD4140 Approved
0.7212 Intermediate Similarity NPD5616 Clinical (unspecified phase)
0.7211 Intermediate Similarity NPD5327 Phase 3
0.7205 Intermediate Similarity NPD920 Approved
0.717 Intermediate Similarity NPD7236 Approved
0.7152 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD4110 Phase 3
0.7152 Intermediate Similarity NPD7003 Approved
0.7124 Intermediate Similarity NPD2979 Phase 3
0.7117 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD7458 Discontinued
0.7105 Intermediate Similarity NPD2313 Discontinued
0.7095 Intermediate Similarity NPD4359 Approved
0.7093 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7089 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7081 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD1281 Approved
0.7071 Intermediate Similarity NPD2181 Clinical (unspecified phase)
0.707 Intermediate Similarity NPD2344 Approved
0.707 Intermediate Similarity NPD5762 Approved
0.707 Intermediate Similarity NPD5763 Approved
0.7063 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD6663 Approved
0.7055 Intermediate Similarity NPD3412 Clinical (unspecified phase)
0.7051 Intermediate Similarity NPD3748 Approved
0.7048 Intermediate Similarity NPD7819 Suspended
0.7044 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7042 Intermediate Similarity NPD1241 Discontinued
0.7013 Intermediate Similarity NPD4307 Phase 2
0.7007 Intermediate Similarity NPD7457 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD2438 Suspended
0.7 Intermediate Similarity NPD3267 Approved
0.7 Intermediate Similarity NPD3266 Approved
0.6986 Remote Similarity NPD5691 Approved
0.6981 Remote Similarity NPD1243 Approved
0.6975 Remote Similarity NPD7004 Clinical (unspecified phase)
0.697 Remote Similarity NPD6599 Discontinued
0.697 Remote Similarity NPD7028 Phase 2
0.6968 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6962 Remote Similarity NPD6002 Phase 3
0.6962 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6962 Remote Similarity NPD6005 Phase 3
0.6962 Remote Similarity NPD6004 Phase 3
0.6962 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6959 Remote Similarity NPD6808 Phase 2
0.6954 Remote Similarity NPD2798 Approved
0.6951 Remote Similarity NPD7239 Suspended
0.6948 Remote Similarity NPD4870 Approved
0.6939 Remote Similarity NPD17 Approved
0.6933 Remote Similarity NPD1283 Approved
0.6923 Remote Similarity NPD6353 Approved
0.6909 Remote Similarity NPD3226 Approved
0.6908 Remote Similarity NPD5736 Approved
0.6899 Remote Similarity NPD2531 Phase 2
0.6899 Remote Similarity NPD2796 Approved
0.6899 Remote Similarity NPD2935 Discontinued
0.6894 Remote Similarity NPD2309 Approved
0.6894 Remote Similarity NPD3887 Approved
0.6887 Remote Similarity NPD2797 Approved
0.6883 Remote Similarity NPD3268 Approved
0.6882 Remote Similarity NPD919 Approved
0.6871 Remote Similarity NPD1651 Approved
0.6859 Remote Similarity NPD5735 Approved
0.6845 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6842 Remote Similarity NPD5494 Approved
0.6842 Remote Similarity NPD5647 Approved
0.6836 Remote Similarity NPD6559 Discontinued
0.6835 Remote Similarity NPD4308 Phase 3
0.6832 Remote Similarity NPD3750 Approved
0.6832 Remote Similarity NPD8166 Discontinued
0.6818 Remote Similarity NPD5952 Clinical (unspecified phase)
0.68 Remote Similarity NPD1608 Approved
0.6792 Remote Similarity NPD4476 Approved
0.6792 Remote Similarity NPD1551 Phase 2
0.6792 Remote Similarity NPD4477 Approved
0.6786 Remote Similarity NPD6279 Approved
0.6786 Remote Similarity NPD6280 Approved
0.6774 Remote Similarity NPD6798 Discontinued
0.6774 Remote Similarity NPD3764 Approved
0.6768 Remote Similarity NPD2533 Approved
0.6768 Remote Similarity NPD2532 Approved
0.6768 Remote Similarity NPD2534 Approved
0.6765 Remote Similarity NPD4966 Approved
0.6765 Remote Similarity NPD4965 Approved
0.6765 Remote Similarity NPD4967 Phase 2
0.6757 Remote Similarity NPD3024 Approved
0.6757 Remote Similarity NPD3025 Approved
0.6752 Remote Similarity NPD4618 Approved
0.6752 Remote Similarity NPD4622 Approved
0.6732 Remote Similarity NPD1019 Discontinued
0.6732 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6726 Remote Similarity NPD6873 Phase 2
0.6725 Remote Similarity NPD3749 Approved
0.6725 Remote Similarity NPD7075 Discontinued
0.6711 Remote Similarity NPD1778 Approved
0.6711 Remote Similarity NPD4626 Approved
0.671 Remote Similarity NPD7095 Approved
0.6709 Remote Similarity NPD6653 Approved
0.6707 Remote Similarity NPD6799 Approved
0.669 Remote Similarity NPD2182 Approved
0.6689 Remote Similarity NPD9717 Approved
0.6688 Remote Similarity NPD4060 Phase 1
0.6687 Remote Similarity NPD6099 Approved
0.6687 Remote Similarity NPD6100 Approved
0.6686 Remote Similarity NPD6234 Discontinued
0.6685 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6667 Remote Similarity NPD3026 Approved
0.6667 Remote Similarity NPD3134 Approved
0.6667 Remote Similarity NPD3496 Discontinued
0.6667 Remote Similarity NPD5688 Approved
0.6667 Remote Similarity NPD1203 Approved
0.6667 Remote Similarity NPD6362 Approved
0.6667 Remote Similarity NPD4947 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7097 Phase 1
0.6667 Remote Similarity NPD5689 Approved
0.6667 Remote Similarity NPD7768 Phase 2
0.6667 Remote Similarity NPD3023 Approved
0.6667 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6646 Remote Similarity NPD1933 Approved
0.6646 Remote Similarity NPD2353 Approved
0.6646 Remote Similarity NPD2355 Clinical (unspecified phase)
0.6627 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6627 Remote Similarity NPD7411 Suspended
0.6624 Remote Similarity NPD7961 Discontinued
0.6623 Remote Similarity NPD1611 Approved
0.6623 Remote Similarity NPD6287 Discontinued
0.6621 Remote Similarity NPD7094 Approved
0.6621 Remote Similarity NPD6858 Approved
0.6621 Remote Similarity NPD5535 Approved
0.6609 Remote Similarity NPD7199 Phase 2
0.6609 Remote Similarity NPD1247 Approved
0.6608 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6607 Remote Similarity NPD2649 Approved
0.6607 Remote Similarity NPD2651 Approved
0.6605 Remote Similarity NPD2897 Discontinued
0.6605 Remote Similarity NPD970 Clinical (unspecified phase)
0.6605 Remote Similarity NPD5958 Discontinued
0.6605 Remote Similarity NPD4534 Discontinued
0.66 Remote Similarity NPD2932 Approved
0.66 Remote Similarity NPD3019 Approved
0.6588 Remote Similarity NPD6801 Discontinued
0.6588 Remote Similarity NPD37 Approved
0.6587 Remote Similarity NPD3869 Phase 3
0.6587 Remote Similarity NPD3873 Phase 3
0.6587 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6582 Remote Similarity NPD3140 Approved
0.6582 Remote Similarity NPD3142 Approved
0.6577 Remote Similarity NPD1894 Discontinued
0.6575 Remote Similarity NPD8313 Approved
0.6575 Remote Similarity NPD8312 Approved
0.6573 Remote Similarity NPD5844 Phase 1
0.6571 Remote Similarity NPD7315 Approved
0.657 Remote Similarity NPD7057 Phase 3
0.657 Remote Similarity NPD7058 Phase 2
0.657 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6564 Remote Similarity NPD2800 Approved
0.6561 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6561 Remote Similarity NPD411 Approved
0.6558 Remote Similarity NPD1049 Clinical (unspecified phase)
0.6545 Remote Similarity NPD7440 Discontinued
0.6541 Remote Similarity NPD447 Suspended
0.6538 Remote Similarity NPD2614 Approved
0.6534 Remote Similarity NPD3926 Phase 2
0.6534 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6529 Remote Similarity NPD6677 Suspended
0.6529 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6527 Remote Similarity NPD5049 Phase 3
0.6526 Remote Similarity NPD4107 Approved
0.6522 Remote Similarity NPD7033 Discontinued
0.6519 Remote Similarity NPD6233 Phase 2
0.6519 Remote Similarity NPD4062 Phase 3
0.6517 Remote Similarity NPD7228 Approved
0.6517 Remote Similarity NPD7799 Discontinued
0.6516 Remote Similarity NPD4624 Approved
0.6512 Remote Similarity NPD5402 Approved
0.6512 Remote Similarity NPD5977 Approved
0.6512 Remote Similarity NPD5978 Approved
0.6506 Remote Similarity NPD6143 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   44627502
ChEMBL   CHEMBL1087270
ZINC  

Physicochemical Properties

Molecular Weight:  494.30
ALogP:  1.8258
MLogP:  4.32
XLogP:  8.433
# Rotatable Bonds:  12
Polar Surface Area:  65.74
# H-Bond Aceptor:  4
# H-Bond Donor:  0
# Rings:  6
# Heavy Atoms:  36

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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