Natural Product: NPC93666

Natural Product ID:  NPC93666
Common Name:   Gardenoin A
IUPAC Name:  
Synonyms:  
Molecular Formula:   C30H40O5
Standard InCHIKey:  GHKXTBCFVSTLGB-VVYDSIJPSA-N
Standard InCHI:  InChI=1S/C30H40O5/c1-17-12-20(34-15-17)13-18(2)21-6-8-28(5)23-14-22-25(19(3)26(33)35-22)30(9-7-24(31)32)16-29(23,30)11-10-27(21,28)4/h12,15,18,21-23,25H,3,6-11,13-14,16H2,1-2,4-5H3,(H,31,32)/t18-,21-,22-,23+,25-,27-,28+,29+,30-/m1/s1
Canonical SMILES:  OC(=O)CC[C@@]12C[C@@]32CC[C@]2([C@@]([C@@H]3C[C@@H]3[C@H]1C(=C)C(=O)O3)(C)CC[C@@H]2[C@@H](Cc1occ(c1)C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota Exudates PMID[20028108]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT845 Cell Line BT-474 Homo sapiens IC50 > 5 ug/ml 26200396
NPT65 Cell Line HepG2 Homo sapiens IC50 = 4.5 ug/ml DrugMatrix in vitro pharmacology data
NPT323 Cell Line SW-620 Homo sapiens IC50 > 5 ug/ml PubChem BioAssay data set
NPT2 Others Unspecified IC50 = 1.6 ug/ml PubChem BioAssay data set
NPT2 Others Unspecified IC50 > 5 ug/ml PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC93666 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9786 High Similarity NPC56731
0.9396 High Similarity NPC84349
0.8951 High Similarity NPC202260
0.8808 High Similarity NPC246164
0.8707 High Similarity NPC470273
0.8681 High Similarity NPC307401
0.8675 High Similarity NPC212257
0.8636 High Similarity NPC104736
0.863 High Similarity NPC56197
0.8627 High Similarity NPC471863
0.8609 High Similarity NPC234494
0.86 High Similarity NPC471174
0.86 High Similarity NPC216755
0.8581 High Similarity NPC304692
0.8571 High Similarity NPC155939
0.8571 High Similarity NPC25351
0.8571 High Similarity NPC296807
0.8571 High Similarity NPC141538
0.8562 High Similarity NPC121615
0.8562 High Similarity NPC294511
0.8553 High Similarity NPC470997
0.8535 High Similarity NPC471003
0.8523 High Similarity NPC251865
0.8523 High Similarity NPC238843
0.8523 High Similarity NPC199044
0.8516 High Similarity NPC41880
0.8497 Intermediate Similarity NPC272590
0.8487 Intermediate Similarity NPC471001
0.8487 Intermediate Similarity NPC211625
0.8487 Intermediate Similarity NPC472654
0.8477 Intermediate Similarity NPC71821
0.8477 Intermediate Similarity NPC224418
0.8467 Intermediate Similarity NPC185456
0.8442 Intermediate Similarity NPC33938
0.8442 Intermediate Similarity NPC470996
0.8438 Intermediate Similarity NPC310572
0.8431 Intermediate Similarity NPC228842
0.8431 Intermediate Similarity NPC196846
0.8425 Intermediate Similarity NPC215109
0.8425 Intermediate Similarity NPC170604
0.8411 Intermediate Similarity NPC471292
0.8408 Intermediate Similarity NPC474611
0.8392 Intermediate Similarity NPC298190
0.8389 Intermediate Similarity NPC121158
0.8389 Intermediate Similarity NPC263337
0.8387 Intermediate Similarity NPC44606
0.8387 Intermediate Similarity NPC237259
0.8387 Intermediate Similarity NPC114880
0.8387 Intermediate Similarity NPC98206
0.8387 Intermediate Similarity NPC34421
0.838 Intermediate Similarity NPC59502
0.8366 Intermediate Similarity NPC195325
0.8365 Intermediate Similarity NPC283209
0.8365 Intermediate Similarity NPC285567
0.8355 Intermediate Similarity NPC302987
0.8344 Intermediate Similarity NPC195954
0.8344 Intermediate Similarity NPC88007
0.8344 Intermediate Similarity NPC7059
0.8344 Intermediate Similarity NPC194499
0.8333 Intermediate Similarity NPC92979
0.8333 Intermediate Similarity NPC267632
0.8333 Intermediate Similarity NPC473982
0.8313 Intermediate Similarity NPC261184
0.8311 Intermediate Similarity NPC90953
0.831 Intermediate Similarity NPC329707
0.8302 Intermediate Similarity NPC68848
0.8301 Intermediate Similarity NPC19747
0.8301 Intermediate Similarity NPC471007
0.8298 Intermediate Similarity NPC46536
0.8298 Intermediate Similarity NPC138139
0.8289 Intermediate Similarity NPC233763
0.8289 Intermediate Similarity NPC470999
0.8289 Intermediate Similarity NPC62799
0.8288 Intermediate Similarity NPC476947
0.8286 Intermediate Similarity NPC178382
0.8282 Intermediate Similarity NPC475237
0.8282 Intermediate Similarity NPC475641
0.8276 Intermediate Similarity NPC293253
0.8264 Intermediate Similarity NPC61788
0.8264 Intermediate Similarity NPC89133
0.8255 Intermediate Similarity NPC148374
0.8252 Intermediate Similarity NPC198904
0.8247 Intermediate Similarity NPC470998
0.8247 Intermediate Similarity NPC95526
0.8243 Intermediate Similarity NPC236532
0.8239 Intermediate Similarity NPC8389
0.8239 Intermediate Similarity NPC287559
0.8231 Intermediate Similarity NPC146872
0.8228 Intermediate Similarity NPC81405
0.8228 Intermediate Similarity NPC470118
0.8228 Intermediate Similarity NPC197137
0.8224 Intermediate Similarity NPC247221
0.8221 Intermediate Similarity NPC118086
0.8217 Intermediate Similarity NPC75310
0.8212 Intermediate Similarity NPC205071
0.8205 Intermediate Similarity NPC471002
0.8205 Intermediate Similarity NPC268905
0.8205 Intermediate Similarity NPC75906
0.8205 Intermediate Similarity NPC472672
0.82 Intermediate Similarity NPC205765
0.8199 Intermediate Similarity NPC472664
0.8194 Intermediate Similarity NPC156189
0.8187 Intermediate Similarity NPC79571
0.8187 Intermediate Similarity NPC188649
0.8187 Intermediate Similarity NPC470792
0.8187 Intermediate Similarity NPC18986
0.8182 Intermediate Similarity NPC112706
0.8182 Intermediate Similarity NPC207294
0.8176 Intermediate Similarity NPC472823
0.8176 Intermediate Similarity NPC140952
0.8176 Intermediate Similarity NPC475226
0.8176 Intermediate Similarity NPC470742
0.817 Intermediate Similarity NPC346
0.8158 Intermediate Similarity NPC84479
0.8158 Intermediate Similarity NPC476944
0.8153 Intermediate Similarity NPC302054
0.8153 Intermediate Similarity NPC253201
0.8151 Intermediate Similarity NPC218838
0.8151 Intermediate Similarity NPC471006
0.8146 Intermediate Similarity NPC52412
0.8141 Intermediate Similarity NPC291150
0.8141 Intermediate Similarity NPC116717
0.8141 Intermediate Similarity NPC471000
0.8138 Intermediate Similarity NPC470278
0.8137 Intermediate Similarity NPC288602
0.8137 Intermediate Similarity NPC88841
0.8137 Intermediate Similarity NPC165218
0.8133 Intermediate Similarity NPC67003
0.8125 Intermediate Similarity NPC472299
0.8117 Intermediate Similarity NPC221809
0.8117 Intermediate Similarity NPC255414
0.8113 Intermediate Similarity NPC214495
0.8113 Intermediate Similarity NPC469847
0.8113 Intermediate Similarity NPC475066
0.8113 Intermediate Similarity NPC470119
0.8112 Intermediate Similarity NPC83178
0.811 Intermediate Similarity NPC472660
0.8105 Intermediate Similarity NPC290038
0.8099 Intermediate Similarity NPC179354
0.8099 Intermediate Similarity NPC290193
0.8098 Intermediate Similarity NPC478179
0.8092 Intermediate Similarity NPC243577
0.8092 Intermediate Similarity NPC476946
0.8089 Intermediate Similarity NPC475777
0.8086 Intermediate Similarity NPC27541
0.8086 Intermediate Similarity NPC62692
0.8086 Intermediate Similarity NPC61967
0.8086 Intermediate Similarity NPC126984
0.8085 Intermediate Similarity NPC16922
0.8079 Intermediate Similarity NPC20500
0.8077 Intermediate Similarity NPC5180
0.8071 Intermediate Similarity NPC97566
0.8063 Intermediate Similarity NPC116639
0.8063 Intermediate Similarity NPC472671
0.8061 Intermediate Similarity NPC294512
0.8061 Intermediate Similarity NPC285227
0.8056 Intermediate Similarity NPC26532
0.8056 Intermediate Similarity NPC279877
0.8049 Intermediate Similarity NPC296558
0.8041 Intermediate Similarity NPC92941
0.8039 Intermediate Similarity NPC158871
0.8038 Intermediate Similarity NPC30222
0.8038 Intermediate Similarity NPC57998
0.8038 Intermediate Similarity NPC178932
0.8037 Intermediate Similarity NPC478178
0.8037 Intermediate Similarity NPC475779
0.8037 Intermediate Similarity NPC214600
0.8037 Intermediate Similarity NPC277618
0.8037 Intermediate Similarity NPC121995
0.8028 Intermediate Similarity NPC130275
0.8025 Intermediate Similarity NPC663
0.8025 Intermediate Similarity NPC14499
0.8025 Intermediate Similarity NPC476035
0.8025 Intermediate Similarity NPC472787
0.8025 Intermediate Similarity NPC224394
0.8025 Intermediate Similarity NPC475039
0.8025 Intermediate Similarity NPC18135
0.8025 Intermediate Similarity NPC471168
0.8024 Intermediate Similarity NPC167340
0.8013 Intermediate Similarity NPC69647
0.8013 Intermediate Similarity NPC125182
0.8013 Intermediate Similarity NPC470790
0.8013 Intermediate Similarity NPC253591
0.8013 Intermediate Similarity NPC470791
0.8 Intermediate Similarity NPC476943
0.8 Intermediate Similarity NPC208389
0.8 Intermediate Similarity NPC120836
0.8 Intermediate Similarity NPC286038
0.8 Intermediate Similarity NPC299038
0.8 Intermediate Similarity NPC223063
0.7988 Intermediate Similarity NPC270312
0.7987 Intermediate Similarity NPC34056
0.7987 Intermediate Similarity NPC46896
0.7987 Intermediate Similarity NPC469336
0.7987 Intermediate Similarity NPC35000
0.7986 Intermediate Similarity NPC246392
0.7986 Intermediate Similarity NPC290955
0.7975 Intermediate Similarity NPC308205
0.7975 Intermediate Similarity NPC56358
0.7975 Intermediate Similarity NPC29695

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC93666 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8067 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD6273 Approved
0.7987 Intermediate Similarity NPD5761 Phase 2
0.7987 Intermediate Similarity NPD5760 Phase 2
0.7917 Intermediate Similarity NPD6764 Approved
0.7917 Intermediate Similarity NPD6765 Approved
0.7733 Intermediate Similarity NPD6784 Approved
0.7733 Intermediate Similarity NPD6785 Approved
0.7697 Intermediate Similarity NPD2799 Discontinued
0.76 Intermediate Similarity NPD8032 Phase 2
0.7586 Intermediate Similarity NPD8434 Phase 2
0.7576 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD4628 Phase 3
0.75 Intermediate Similarity NPD6355 Discontinued
0.7485 Intermediate Similarity NPD8127 Discontinued
0.7484 Intermediate Similarity NPD2346 Discontinued
0.7434 Intermediate Similarity NPD4140 Approved
0.7372 Intermediate Similarity NPD1471 Phase 3
0.7365 Intermediate Similarity NPD1876 Approved
0.7358 Intermediate Similarity NPD7236 Approved
0.7342 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7342 Intermediate Similarity NPD4110 Phase 3
0.7342 Intermediate Similarity NPD7003 Approved
0.7303 Intermediate Similarity NPD2313 Discontinued
0.7301 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD7458 Discontinued
0.7278 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD2344 Approved
0.7261 Intermediate Similarity NPD5763 Approved
0.7261 Intermediate Similarity NPD5762 Approved
0.7255 Intermediate Similarity NPD6663 Approved
0.7233 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD7819 Suspended
0.7192 Intermediate Similarity NPD5585 Approved
0.7171 Intermediate Similarity NPD6832 Phase 2
0.716 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6005 Phase 3
0.7152 Intermediate Similarity NPD7028 Phase 2
0.7152 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD6002 Phase 3
0.7152 Intermediate Similarity NPD6004 Phase 3
0.7134 Intermediate Similarity NPD7239 Suspended
0.7133 Intermediate Similarity NPD1283 Approved
0.7115 Intermediate Similarity NPD6353 Approved
0.7114 Intermediate Similarity NPD3972 Approved
0.7105 Intermediate Similarity NPD5736 Approved
0.7091 Intermediate Similarity NPD3226 Approved
0.7089 Intermediate Similarity NPD2935 Discontinued
0.7086 Intermediate Similarity NPD2797 Approved
0.7083 Intermediate Similarity NPD5616 Clinical (unspecified phase)
0.7081 Intermediate Similarity NPD2309 Approved
0.7078 Intermediate Similarity NPD3268 Approved
0.7073 Intermediate Similarity NPD920 Approved
0.7067 Intermediate Similarity NPD5327 Phase 3
0.7051 Intermediate Similarity NPD5735 Approved
0.7048 Intermediate Similarity NPD6599 Discontinued
0.7039 Intermediate Similarity NPD2798 Approved
0.7039 Intermediate Similarity NPD5647 Approved
0.7025 Intermediate Similarity NPD4308 Phase 3
0.7024 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD3750 Approved
0.7019 Intermediate Similarity NPD8166 Discontinued
0.7013 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD6559 Discontinued
0.7 Intermediate Similarity NPD1608 Approved
0.6987 Remote Similarity NPD2979 Phase 3
0.6981 Remote Similarity NPD4477 Approved
0.6981 Remote Similarity NPD1551 Phase 2
0.6981 Remote Similarity NPD4476 Approved
0.6971 Remote Similarity NPD7893 Clinical (unspecified phase)
0.6968 Remote Similarity NPD3764 Approved
0.6968 Remote Similarity NPD6798 Discontinued
0.6954 Remote Similarity NPD4359 Approved
0.6951 Remote Similarity NPD2533 Approved
0.6951 Remote Similarity NPD642 Clinical (unspecified phase)
0.6951 Remote Similarity NPD2532 Approved
0.6951 Remote Similarity NPD2534 Approved
0.6941 Remote Similarity NPD4965 Approved
0.6941 Remote Similarity NPD4967 Phase 2
0.6941 Remote Similarity NPD4966 Approved
0.6933 Remote Similarity NPD1281 Approved
0.6933 Remote Similarity NPD643 Clinical (unspecified phase)
0.6933 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6928 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6923 Remote Similarity NPD2181 Clinical (unspecified phase)
0.6918 Remote Similarity NPD3748 Approved
0.6913 Remote Similarity NPD3412 Clinical (unspecified phase)
0.6913 Remote Similarity NPD1778 Approved
0.6903 Remote Similarity NPD7095 Approved
0.6901 Remote Similarity NPD3749 Approved
0.6901 Remote Similarity NPD7075 Discontinued
0.6899 Remote Similarity NPD6653 Approved
0.6897 Remote Similarity NPD1241 Discontinued
0.6887 Remote Similarity NPD9717 Approved
0.6879 Remote Similarity NPD4060 Phase 1
0.6879 Remote Similarity NPD4307 Phase 2
0.6875 Remote Similarity NPD2438 Suspended
0.6875 Remote Similarity NPD6100 Approved
0.6875 Remote Similarity NPD6099 Approved
0.6867 Remote Similarity NPD7457 Clinical (unspecified phase)
0.6863 Remote Similarity NPD3266 Approved
0.6863 Remote Similarity NPD6362 Approved
0.6863 Remote Similarity NPD3267 Approved
0.6863 Remote Similarity NPD1203 Approved
0.686 Remote Similarity NPD6234 Discontinued
0.6859 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6855 Remote Similarity NPD7097 Phase 1
0.6852 Remote Similarity NPD1243 Approved
0.6851 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6846 Remote Similarity NPD5691 Approved
0.6842 Remote Similarity NPD7768 Phase 2
0.6839 Remote Similarity NPD6808 Phase 2
0.6835 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6815 Remote Similarity NPD4870 Approved
0.6815 Remote Similarity NPD7961 Discontinued
0.6805 Remote Similarity NPD7411 Suspended
0.68 Remote Similarity NPD17 Approved
0.68 Remote Similarity NPD4626 Approved
0.68 Remote Similarity NPD2932 Approved
0.68 Remote Similarity NPD3019 Approved
0.679 Remote Similarity NPD970 Clinical (unspecified phase)
0.679 Remote Similarity NPD5958 Discontinued
0.679 Remote Similarity NPD4534 Discontinued
0.6788 Remote Similarity NPD6799 Approved
0.6784 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6782 Remote Similarity NPD7199 Phase 2
0.6779 Remote Similarity NPD1894 Discontinued
0.677 Remote Similarity NPD2531 Phase 2
0.677 Remote Similarity NPD2796 Approved
0.6768 Remote Similarity NPD3887 Approved
0.6765 Remote Similarity NPD37 Approved
0.6763 Remote Similarity NPD919 Approved
0.6755 Remote Similarity NPD3496 Discontinued
0.6752 Remote Similarity NPD411 Approved
0.6752 Remote Similarity NPD1699 Clinical (unspecified phase)
0.6748 Remote Similarity NPD2800 Approved
0.6744 Remote Similarity NPD7058 Phase 2
0.6744 Remote Similarity NPD7057 Phase 3
0.6744 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6743 Remote Similarity NPD7315 Approved
0.6742 Remote Similarity NPD5844 Phase 1
0.674 Remote Similarity NPD8313 Approved
0.674 Remote Similarity NPD8312 Approved
0.6733 Remote Similarity NPD1651 Approved
0.6731 Remote Similarity NPD2614 Approved
0.673 Remote Similarity NPD447 Suspended
0.6727 Remote Similarity NPD7440 Discontinued
0.6724 Remote Similarity NPD5494 Approved
0.671 Remote Similarity NPD4624 Approved
0.6709 Remote Similarity NPD4062 Phase 3
0.6709 Remote Similarity NPD6233 Phase 2
0.6708 Remote Similarity NPD7033 Discontinued
0.6707 Remote Similarity NPD5049 Phase 3
0.6706 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6705 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6688 Remote Similarity NPD7008 Discontinued
0.6687 Remote Similarity NPD1549 Phase 2
0.6687 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6686 Remote Similarity NPD2651 Approved
0.6686 Remote Similarity NPD2649 Approved
0.6685 Remote Similarity NPD7228 Approved
0.6685 Remote Similarity NPD7799 Discontinued
0.6667 Remote Similarity NPD6280 Approved
0.6667 Remote Similarity NPD6801 Discontinued
0.6667 Remote Similarity NPD6279 Approved
0.6667 Remote Similarity NPD2354 Approved
0.6667 Remote Similarity NPD6844 Discontinued
0.6648 Remote Similarity NPD7229 Phase 3
0.6647 Remote Similarity NPD3882 Suspended
0.6647 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6645 Remote Similarity NPD3023 Approved
0.6645 Remote Similarity NPD3026 Approved
0.663 Remote Similarity NPD7685 Pre-registration
0.6629 Remote Similarity NPD7473 Discontinued
0.6628 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6626 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6626 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6625 Remote Similarity NPD4618 Approved
0.6625 Remote Similarity NPD4622 Approved
0.6623 Remote Similarity NPD3024 Approved
0.6623 Remote Similarity NPD3025 Approved
0.6608 Remote Similarity NPD6677 Suspended
0.6608 Remote Similarity NPD6873 Phase 2
0.6606 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6603 Remote Similarity NPD1019 Discontinued
0.66 Remote Similarity NPD8404 Phase 2
0.6595 Remote Similarity NPD7693 Approved
0.6592 Remote Similarity NPD7177 Discontinued
0.6592 Remote Similarity NPD6620 Discovery
0.6591 Remote Similarity NPD6959 Discontinued
0.659 Remote Similarity NPD2296 Approved
0.659 Remote Similarity NPD5402 Approved
0.6585 Remote Similarity NPD2424 Discontinued
0.6584 Remote Similarity NPD2157 Approved
0.658 Remote Similarity NPD7497 Discontinued
0.6577 Remote Similarity NPD7157 Approved
0.6573 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6571 Remote Similarity NPD6315 Phase 2
0.6568 Remote Similarity NPD5403 Approved

Structure

External Identifiers

PubChem CID   44627501
ChEMBL   CHEMBL1087147
ZINC  

Physicochemical Properties

Molecular Weight:  480.29
ALogP:  1.5748
MLogP:  4.21
XLogP:  8.112
# Rotatable Bonds:  11
Polar Surface Area:  76.74
# H-Bond Aceptor:  4
# H-Bond Donor:  1
# Rings:  6
# Heavy Atoms:  35

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs