Natural Product: NPC279676

Natural Product ID:  NPC279676
Common Name:   Cimicifugic Acid D
IUPAC Name:   (2R,3S)-3-[(E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy-2-hydroxy-2-[(4-hydroxyphenyl)methyl]butanedioic acid
Synonyms:   Cimicifugic Acid D
Molecular Formula:   C20H18O10
Standard InCHIKey:  MTGTYFYLZVUKQG-ZUVWSUMTSA-N
Standard InCHI:  InChI=1S/C20H18O10/c21-13-5-1-12(2-6-13)10-20(29,19(27)28)17(18(25)26)30-16(24)8-4-11-3-7-14(22)15(23)9-11/h1-9,17,21-23,29H,10H2,(H,25,26)(H,27,28)/b8-4+/t17-,20-/m1/s1
Canonical SMILES:  O=C(O[C@@H]([C@@](C(=O)O)(Cc1ccc(cc1)O)O)C(=O)O)/C=C/c1ccc(c(c1)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30530 Cimicifuga dahurica Species Ranunculaceae Eukaryota PMID[20192237]
NPO32999 cimicifuga heracleifolia Species Ranunculaceae Eukaryota PMID[20192237]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 153000 nM 19114677

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC279676 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC67349
0.9848 High Similarity NPC156709
0.9848 High Similarity NPC179505
0.9538 High Similarity NPC108553
0.9489 High Similarity NPC258671
0.9489 High Similarity NPC53884
0.9462 High Similarity NPC329344
0.9462 High Similarity NPC32626
0.9462 High Similarity NPC237506
0.9462 High Similarity NPC217052
0.9416 High Similarity NPC304956
0.9353 High Similarity NPC229264
0.9353 High Similarity NPC283081
0.9353 High Similarity NPC299090
0.9353 High Similarity NPC143892
0.9353 High Similarity NPC221383
0.9173 High Similarity NPC25581
0.9173 High Similarity NPC18074
0.9173 High Similarity NPC5419
0.9173 High Similarity NPC61
0.9104 High Similarity NPC168799
0.9104 High Similarity NPC155209
0.9098 High Similarity NPC198388
0.9077 High Similarity NPC132921
0.9037 High Similarity NPC106406
0.9028 High Similarity NPC95498
0.9028 High Similarity NPC246566
0.9021 High Similarity NPC32197
0.9014 High Similarity NPC471076
0.9014 High Similarity NPC192568
0.9008 High Similarity NPC251407
0.9008 High Similarity NPC168653
0.9008 High Similarity NPC475695
0.9 High Similarity NPC474692
0.8944 High Similarity NPC322660
0.8929 High Similarity NPC303090
0.8929 High Similarity NPC319628
0.8929 High Similarity NPC220664
0.8929 High Similarity NPC284948
0.8929 High Similarity NPC37331
0.8913 High Similarity NPC152942
0.8913 High Similarity NPC302857
0.8913 High Similarity NPC37250
0.8913 High Similarity NPC219428
0.8913 High Similarity NPC142703
0.8913 High Similarity NPC278068
0.8857 High Similarity NPC471027
0.8857 High Similarity NPC477335
0.8857 High Similarity NPC297517
0.8857 High Similarity NPC35702
0.8857 High Similarity NPC13818
0.8857 High Similarity NPC206095
0.8857 High Similarity NPC224389
0.8849 High Similarity NPC303683
0.8849 High Similarity NPC205751
0.8849 High Similarity NPC295492
0.8849 High Similarity NPC476820
0.8849 High Similarity NPC274891
0.8849 High Similarity NPC474875
0.8849 High Similarity NPC476819
0.8849 High Similarity NPC26241
0.8794 High Similarity NPC43158
0.8794 High Similarity NPC258469
0.8794 High Similarity NPC192831
0.8794 High Similarity NPC277315
0.8794 High Similarity NPC472016
0.8776 High Similarity NPC477299
0.8732 High Similarity NPC183824
0.8714 High Similarity NPC288452
0.8714 High Similarity NPC289690
0.8686 High Similarity NPC471749
0.8676 High Similarity NPC318799
0.8671 High Similarity NPC477333
0.8662 High Similarity NPC285550
0.8652 High Similarity NPC477279
0.8652 High Similarity NPC38473
0.8643 High Similarity NPC24295
0.8643 High Similarity NPC283560
0.863 High Similarity NPC221091
0.863 High Similarity NPC259576
0.8623 High Similarity NPC474895
0.8623 High Similarity NPC68517
0.8609 High Similarity NPC44507
0.86 High Similarity NPC40920
0.86 High Similarity NPC223335
0.8592 High Similarity NPC477277
0.8592 High Similarity NPC477278
0.8582 High Similarity NPC118584
0.8582 High Similarity NPC147192
0.8571 High Similarity NPC300329
0.8571 High Similarity NPC288945
0.8571 High Similarity NPC308976
0.8561 High Similarity NPC70680
0.8561 High Similarity NPC86900
0.8561 High Similarity NPC233350
0.8561 High Similarity NPC182217
0.855 High Similarity NPC470849
0.855 High Similarity NPC470848
0.8543 High Similarity NPC469654
0.8538 High Similarity NPC141791
0.8538 High Similarity NPC263386
0.8521 High Similarity NPC9218
0.8511 High Similarity NPC284409
0.8507 High Similarity NPC67951
0.85 High Similarity NPC90431
0.8496 Intermediate Similarity NPC285345
0.8496 Intermediate Similarity NPC14141
0.8493 Intermediate Similarity NPC473138
0.8493 Intermediate Similarity NPC1580
0.8493 Intermediate Similarity NPC28776
0.8483 Intermediate Similarity NPC98356
0.8472 Intermediate Similarity NPC160378
0.8456 Intermediate Similarity NPC266084
0.8456 Intermediate Similarity NPC473544
0.8456 Intermediate Similarity NPC475162
0.8456 Intermediate Similarity NPC475145
0.8456 Intermediate Similarity NPC83663
0.8456 Intermediate Similarity NPC475216
0.8456 Intermediate Similarity NPC475595
0.8451 Intermediate Similarity NPC471875
0.8446 Intermediate Similarity NPC477334
0.8435 Intermediate Similarity NPC42464
0.8429 Intermediate Similarity NPC113295
0.8429 Intermediate Similarity NPC311742
0.8417 Intermediate Similarity NPC475468
0.8409 Intermediate Similarity NPC98305
0.8397 Intermediate Similarity NPC70084
0.8394 Intermediate Similarity NPC214246
0.8378 Intermediate Similarity NPC306343
0.837 Intermediate Similarity NPC197832
0.8367 Intermediate Similarity NPC43123
0.8346 Intermediate Similarity NPC147654
0.8346 Intermediate Similarity NPC472271
0.8345 Intermediate Similarity NPC50221
0.8345 Intermediate Similarity NPC114242
0.8345 Intermediate Similarity NPC470130
0.8333 Intermediate Similarity NPC265454
0.8333 Intermediate Similarity NPC87403
0.8333 Intermediate Similarity NPC34634
0.8333 Intermediate Similarity NPC44730
0.8333 Intermediate Similarity NPC253481
0.8333 Intermediate Similarity NPC253722
0.8333 Intermediate Similarity NPC31751
0.8321 Intermediate Similarity NPC309434
0.8321 Intermediate Similarity NPC104514
0.8321 Intermediate Similarity NPC275519
0.8321 Intermediate Similarity NPC217431
0.8321 Intermediate Similarity NPC86198
0.8298 Intermediate Similarity NPC267539
0.8298 Intermediate Similarity NPC71108
0.8298 Intermediate Similarity NPC204257
0.8298 Intermediate Similarity NPC176102
0.8298 Intermediate Similarity NPC180171
0.8298 Intermediate Similarity NPC158325
0.8298 Intermediate Similarity NPC254832
0.8298 Intermediate Similarity NPC103398
0.8298 Intermediate Similarity NPC29317
0.8298 Intermediate Similarity NPC229638
0.8289 Intermediate Similarity NPC473275
0.8289 Intermediate Similarity NPC470896
0.8288 Intermediate Similarity NPC228940
0.8288 Intermediate Similarity NPC223185
0.8286 Intermediate Similarity NPC295406
0.8286 Intermediate Similarity NPC157478
0.8286 Intermediate Similarity NPC200422
0.8286 Intermediate Similarity NPC289572
0.8267 Intermediate Similarity NPC93498
0.8267 Intermediate Similarity NPC163883
0.8267 Intermediate Similarity NPC106818
0.8264 Intermediate Similarity NPC100675
0.8261 Intermediate Similarity NPC241354
0.8258 Intermediate Similarity NPC144557
0.8258 Intermediate Similarity NPC470214
0.8258 Intermediate Similarity NPC109371
0.8258 Intermediate Similarity NPC470215
0.8252 Intermediate Similarity NPC220942
0.8244 Intermediate Similarity NPC145023
0.8244 Intermediate Similarity NPC200988
0.8244 Intermediate Similarity NPC610
0.8244 Intermediate Similarity NPC175799
0.8243 Intermediate Similarity NPC472969
0.8243 Intermediate Similarity NPC98009
0.8239 Intermediate Similarity NPC470572
0.8227 Intermediate Similarity NPC287597
0.8227 Intermediate Similarity NPC886
0.8227 Intermediate Similarity NPC176814
0.8227 Intermediate Similarity NPC471110
0.8227 Intermediate Similarity NPC68779
0.8227 Intermediate Similarity NPC4982
0.8227 Intermediate Similarity NPC135127
0.8227 Intermediate Similarity NPC5310
0.8227 Intermediate Similarity NPC34293
0.8227 Intermediate Similarity NPC300776
0.8222 Intermediate Similarity NPC306100
0.8219 Intermediate Similarity NPC121573
0.8219 Intermediate Similarity NPC190587
0.8219 Intermediate Similarity NPC226738
0.8219 Intermediate Similarity NPC122491
0.8219 Intermediate Similarity NPC22176
0.8219 Intermediate Similarity NPC32

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC279676 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8929 High Similarity NPD6190 Approved
0.8 Intermediate Similarity NPD7266 Discontinued
0.7838 Intermediate Similarity NPD8166 Discontinued
0.7821 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7778 Intermediate Similarity NPD230 Phase 1
0.7762 Intermediate Similarity NPD6233 Phase 2
0.7707 Intermediate Similarity NPD3882 Suspended
0.7698 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD6798 Discontinued
0.7687 Intermediate Similarity NPD2935 Discontinued
0.7662 Intermediate Similarity NPD3455 Phase 2
0.7655 Intermediate Similarity NPD6355 Discontinued
0.7643 Intermediate Similarity NPD3817 Phase 2
0.759 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7586 Intermediate Similarity NPD943 Approved
0.7547 Intermediate Similarity NPD7075 Discontinued
0.7532 Intermediate Similarity NPD5402 Approved
0.7517 Intermediate Similarity NPD4062 Phase 3
0.7516 Intermediate Similarity NPD1934 Approved
0.75 Intermediate Similarity NPD3818 Discontinued
0.75 Intermediate Similarity NPD7095 Approved
0.7485 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD6166 Phase 2
0.747 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD4060 Phase 1
0.7456 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7448 Intermediate Similarity NPD3764 Approved
0.7415 Intermediate Similarity NPD447 Suspended
0.7391 Intermediate Similarity NPD6234 Discontinued
0.7379 Intermediate Similarity NPD3027 Phase 3
0.7376 Intermediate Similarity NPD9269 Phase 2
0.7368 Intermediate Similarity NPD3022 Approved
0.7368 Intermediate Similarity NPD3021 Approved
0.7368 Intermediate Similarity NPD4628 Phase 3
0.7365 Intermediate Similarity NPD6797 Phase 2
0.7362 Intermediate Similarity NPD6232 Discontinued
0.7361 Intermediate Similarity NPD9494 Approved
0.7358 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD2801 Approved
0.7355 Intermediate Similarity NPD1512 Approved
0.7347 Intermediate Similarity NPD825 Approved
0.7347 Intermediate Similarity NPD826 Approved
0.7338 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7338 Intermediate Similarity NPD6799 Approved
0.7321 Intermediate Similarity NPD7251 Discontinued
0.7308 Intermediate Similarity NPD5403 Approved
0.7296 Intermediate Similarity NPD6801 Discontinued
0.7278 Intermediate Similarity NPD4380 Phase 2
0.7267 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD4110 Phase 3
0.7255 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD2067 Discontinued
0.7237 Intermediate Similarity NPD5958 Discontinued
0.7237 Intermediate Similarity NPD4534 Discontinued
0.723 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD7473 Discontinued
0.7226 Intermediate Similarity NPD1511 Approved
0.7226 Intermediate Similarity NPD2629 Approved
0.7219 Intermediate Similarity NPD9570 Approved
0.7219 Intermediate Similarity NPD7685 Pre-registration
0.7202 Intermediate Similarity NPD7074 Phase 3
0.7194 Intermediate Similarity NPD5536 Phase 2
0.7188 Intermediate Similarity NPD37 Approved
0.7186 Intermediate Similarity NPD3751 Discontinued
0.7179 Intermediate Similarity NPD5401 Approved
0.7179 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD7808 Phase 3
0.717 Intermediate Similarity NPD6599 Discontinued
0.716 Intermediate Similarity NPD4966 Approved
0.716 Intermediate Similarity NPD4967 Phase 2
0.716 Intermediate Similarity NPD4965 Approved
0.7152 Intermediate Similarity NPD2799 Discontinued
0.7143 Intermediate Similarity NPD7054 Approved
0.7143 Intermediate Similarity NPD9545 Approved
0.7143 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD1465 Phase 2
0.7126 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7122 Intermediate Similarity NPD9493 Approved
0.7117 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD1613 Approved
0.711 Intermediate Similarity NPD8150 Discontinued
0.7105 Intermediate Similarity NPD2438 Suspended
0.7103 Intermediate Similarity NPD1164 Approved
0.7103 Intermediate Similarity NPD1203 Approved
0.7101 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7101 Intermediate Similarity NPD7472 Approved
0.7097 Intermediate Similarity NPD3887 Approved
0.7097 Intermediate Similarity NPD2354 Approved
0.7095 Intermediate Similarity NPD2313 Discontinued
0.7092 Intermediate Similarity NPD9268 Approved
0.7086 Intermediate Similarity NPD7097 Phase 1
0.7083 Intermediate Similarity NPD7228 Approved
0.7075 Intermediate Similarity NPD6832 Phase 2
0.7067 Intermediate Similarity NPD555 Phase 2
0.7063 Intermediate Similarity NPD1535 Discovery
0.7055 Intermediate Similarity NPD257 Approved
0.7055 Intermediate Similarity NPD258 Approved
0.705 Intermediate Similarity NPD4198 Discontinued
0.7047 Intermediate Similarity NPD6663 Approved
0.7044 Intermediate Similarity NPD1653 Approved
0.7021 Intermediate Similarity NPD1894 Discontinued
0.7014 Intermediate Similarity NPD1481 Phase 2
0.7011 Intermediate Similarity NPD8434 Phase 2
0.7007 Intermediate Similarity NPD5736 Approved
0.7007 Intermediate Similarity NPD228 Approved
0.7006 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.6993 Remote Similarity NPD6032 Approved
0.6993 Remote Similarity NPD5404 Approved
0.6993 Remote Similarity NPD1501 Clinical (unspecified phase)
0.6993 Remote Similarity NPD5406 Approved
0.6993 Remote Similarity NPD5408 Approved
0.6993 Remote Similarity NPD5405 Approved
0.6988 Remote Similarity NPD8127 Discontinued
0.6986 Remote Similarity NPD2797 Approved
0.6986 Remote Similarity NPD1470 Approved
0.6981 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6962 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6959 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6954 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6954 Remote Similarity NPD1933 Approved
0.6954 Remote Similarity NPD4340 Discontinued
0.6948 Remote Similarity NPD2346 Discontinued
0.6946 Remote Similarity NPD3787 Discontinued
0.6941 Remote Similarity NPD5844 Phase 1
0.6941 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6939 Remote Similarity NPD5647 Approved
0.6933 Remote Similarity NPD7819 Suspended
0.6933 Remote Similarity NPD259 Phase 1
0.6928 Remote Similarity NPD1510 Phase 2
0.6928 Remote Similarity NPD7033 Discontinued
0.6923 Remote Similarity NPD3400 Discontinued
0.6919 Remote Similarity NPD6559 Discontinued
0.6918 Remote Similarity NPD1283 Approved
0.6918 Remote Similarity NPD5049 Phase 3
0.6914 Remote Similarity NPD6386 Approved
0.6914 Remote Similarity NPD6385 Approved
0.6908 Remote Similarity NPD6653 Approved
0.6906 Remote Similarity NPD5283 Phase 1
0.6903 Remote Similarity NPD1549 Phase 2
0.6894 Remote Similarity NPD3226 Approved
0.6892 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6892 Remote Similarity NPD9569 Approved
0.6887 Remote Similarity NPD2979 Phase 3
0.6883 Remote Similarity NPD1551 Phase 2
0.6879 Remote Similarity NPD405 Clinical (unspecified phase)
0.6875 Remote Similarity NPD3847 Discontinued
0.6867 Remote Similarity NPD3268 Approved
0.6867 Remote Similarity NPD919 Approved
0.6867 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6859 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6839 Remote Similarity NPD8313 Approved
0.6839 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6839 Remote Similarity NPD2344 Approved
0.6839 Remote Similarity NPD2353 Approved
0.6839 Remote Similarity NPD8312 Approved
0.6839 Remote Similarity NPD2355 Clinical (unspecified phase)
0.6839 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6838 Remote Similarity NPD1358 Approved
0.6826 Remote Similarity NPD5494 Approved
0.6818 Remote Similarity NPD4308 Phase 3
0.6815 Remote Similarity NPD3750 Approved
0.6815 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6813 Remote Similarity NPD6273 Approved
0.681 Remote Similarity NPD7411 Suspended
0.6805 Remote Similarity NPD3926 Phase 2
0.6795 Remote Similarity NPD970 Clinical (unspecified phase)
0.6795 Remote Similarity NPD2424 Discontinued
0.679 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6788 Remote Similarity NPD74 Approved
0.6788 Remote Similarity NPD9266 Approved
0.6786 Remote Similarity NPD7199 Phase 2
0.6781 Remote Similarity NPD9717 Approved
0.6781 Remote Similarity NPD1608 Approved
0.6776 Remote Similarity NPD1240 Approved
0.6759 Remote Similarity NPD3496 Discontinued
0.6759 Remote Similarity NPD4106 Approved
0.6759 Remote Similarity NPD4136 Approved
0.6759 Remote Similarity NPD4135 Approved
0.6757 Remote Similarity NPD7435 Discontinued
0.675 Remote Similarity NPD2532 Approved
0.675 Remote Similarity NPD2534 Approved
0.675 Remote Similarity NPD2533 Approved
0.6747 Remote Similarity NPD7768 Phase 2
0.6742 Remote Similarity NPD9495 Approved
0.6741 Remote Similarity NPD1237 Approved
0.6736 Remote Similarity NPD5585 Approved
0.6732 Remote Similarity NPD274 Approved
0.6732 Remote Similarity NPD275 Approved
0.6731 Remote Similarity NPD5763 Approved
0.6731 Remote Similarity NPD5762 Approved
0.6731 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6731 Remote Similarity NPD2343 Clinical (unspecified phase)
0.673 Remote Similarity NPD3300 Phase 2
0.673 Remote Similarity NPD7440 Discontinued
0.6727 Remote Similarity NPD8455 Phase 2
0.6727 Remote Similarity NPD7972 Discontinued
0.672 Remote Similarity NPD8319 Approved

Structure

External Identifiers

PubChem CID   11742743
ChEMBL   CHEMBL1095596
ZINC  

Physicochemical Properties

Molecular Weight:  418.09
ALogP:  -2.1716
MLogP:  2.56
XLogP:  1.08
# Rotatable Bonds:  15
Polar Surface Area:  181.82
# H-Bond Aceptor:  7
# H-Bond Donor:  6
# Rings:  2
# Heavy Atoms:  30

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
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