Natural Product: NPC108553

Natural Product ID:  NPC108553
Common Name:   Cimicifugic Acid K
IUPAC Name:   (2R,3S)-2-hydroxy-2-[(4-hydroxyphenyl)methyl]-3-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxybutanedioic acid
Synonyms:   Cimicifugic Acid K
Molecular Formula:   C20H18O9
Standard InCHIKey:  BNBCNSZOUCPLOA-HHSWOIGYSA-N
Standard InCHI:  InChI=1S/C20H18O9/c21-14-6-1-12(2-7-14)5-10-16(23)29-17(18(24)25)20(28,19(26)27)11-13-3-8-15(22)9-4-13/h1-10,17,21-22,28H,11H2,(H,24,25)(H,26,27)/b10-5+/t17-,20-/m1/s1
Canonical SMILES:  Oc1ccc(cc1)/C=C/C(=O)O[C@@H]([C@@](C(=O)O)(Cc1ccc(cc1)O)O)C(=O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30451 Cimicifuga simplex NA NA NA Aerial parts PMID[20184336]
NPO33345 cimicifuga japonica Species Ranunculaceae Eukaryota Aerial parts PMID[20184336]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT42 Individual Protein Hyaluronidase-1 Homo sapiens IC50 = 255000 nM 18474575

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC108553 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9538 High Similarity NPC67349
0.9538 High Similarity NPC279676
0.9394 High Similarity NPC179505
0.9394 High Similarity NPC156709
0.9118 High Similarity NPC304956
0.9051 High Similarity NPC53884
0.9051 High Similarity NPC258671
0.9 High Similarity NPC329344
0.9 High Similarity NPC217052
0.9 High Similarity NPC237506
0.9 High Similarity NPC32626
0.8921 High Similarity NPC299090
0.8921 High Similarity NPC229264
0.8921 High Similarity NPC283081
0.8921 High Similarity NPC221383
0.8921 High Similarity NPC143892
0.8898 High Similarity NPC14141
0.8779 High Similarity NPC214246
0.875 High Similarity NPC283560
0.875 High Similarity NPC24295
0.8731 High Similarity NPC68517
0.8722 High Similarity NPC5419
0.8722 High Similarity NPC25581
0.8722 High Similarity NPC18074
0.8722 High Similarity NPC61
0.872 High Similarity NPC104514
0.8702 High Similarity NPC217431
0.8667 High Similarity NPC70680
0.8667 High Similarity NPC233350
0.8667 High Similarity NPC182217
0.8657 High Similarity NPC155209
0.8657 High Similarity NPC168799
0.8647 High Similarity NPC198388
0.8615 High Similarity NPC132921
0.8611 High Similarity NPC95498
0.8611 High Similarity NPC246566
0.8601 High Similarity NPC32197
0.8593 High Similarity NPC106406
0.8592 High Similarity NPC471076
0.8592 High Similarity NPC192568
0.8571 High Similarity NPC32
0.8571 High Similarity NPC122491
0.8571 High Similarity NPC474692
0.855 High Similarity NPC168653
0.855 High Similarity NPC251407
0.855 High Similarity NPC475695
0.8548 High Similarity NPC221870
0.8527 High Similarity NPC469927
0.8521 High Similarity NPC322660
0.8519 High Similarity NPC202743
0.85 High Similarity NPC220664
0.85 High Similarity NPC303090
0.85 High Similarity NPC284948
0.85 High Similarity NPC37331
0.85 High Similarity NPC319628
0.8478 Intermediate Similarity NPC278068
0.8478 Intermediate Similarity NPC152942
0.8478 Intermediate Similarity NPC219428
0.8478 Intermediate Similarity NPC142703
0.8478 Intermediate Similarity NPC302857
0.8478 Intermediate Similarity NPC37250
0.8462 Intermediate Similarity NPC236981
0.8444 Intermediate Similarity NPC323379
0.8444 Intermediate Similarity NPC327204
0.8444 Intermediate Similarity NPC173034
0.8429 Intermediate Similarity NPC35702
0.8429 Intermediate Similarity NPC477335
0.8429 Intermediate Similarity NPC297517
0.8429 Intermediate Similarity NPC471027
0.8429 Intermediate Similarity NPC206095
0.8429 Intermediate Similarity NPC13818
0.8429 Intermediate Similarity NPC224389
0.8417 Intermediate Similarity NPC476820
0.8417 Intermediate Similarity NPC26241
0.8417 Intermediate Similarity NPC303683
0.8417 Intermediate Similarity NPC295492
0.8417 Intermediate Similarity NPC256162
0.8417 Intermediate Similarity NPC474875
0.8417 Intermediate Similarity NPC274891
0.8417 Intermediate Similarity NPC59775
0.8417 Intermediate Similarity NPC205751
0.8417 Intermediate Similarity NPC476819
0.8382 Intermediate Similarity NPC477281
0.8382 Intermediate Similarity NPC477280
0.8382 Intermediate Similarity NPC19719
0.8369 Intermediate Similarity NPC472016
0.8369 Intermediate Similarity NPC43158
0.8369 Intermediate Similarity NPC192831
0.8369 Intermediate Similarity NPC277315
0.8369 Intermediate Similarity NPC258469
0.8367 Intermediate Similarity NPC477299
0.8333 Intermediate Similarity NPC23402
0.8322 Intermediate Similarity NPC40920
0.8322 Intermediate Similarity NPC223335
0.831 Intermediate Similarity NPC183824
0.8286 Intermediate Similarity NPC288452
0.8286 Intermediate Similarity NPC289690
0.8281 Intermediate Similarity NPC311091
0.8281 Intermediate Similarity NPC471033
0.8268 Intermediate Similarity NPC128249
0.8267 Intermediate Similarity NPC469654
0.8258 Intermediate Similarity NPC231767
0.8254 Intermediate Similarity NPC285350
0.8252 Intermediate Similarity NPC477333
0.8248 Intermediate Similarity NPC471749
0.824 Intermediate Similarity NPC48525
0.8239 Intermediate Similarity NPC285550
0.8235 Intermediate Similarity NPC318799
0.8227 Intermediate Similarity NPC477279
0.8227 Intermediate Similarity NPC38473
0.8226 Intermediate Similarity NPC183700
0.8219 Intermediate Similarity NPC221091
0.8219 Intermediate Similarity NPC259576
0.8212 Intermediate Similarity NPC44507
0.8201 Intermediate Similarity NPC471345
0.8188 Intermediate Similarity NPC474895
0.8169 Intermediate Similarity NPC477277
0.8169 Intermediate Similarity NPC477278
0.8163 Intermediate Similarity NPC300329
0.8148 Intermediate Similarity NPC158673
0.8148 Intermediate Similarity NPC469930
0.8143 Intermediate Similarity NPC308976
0.8134 Intermediate Similarity NPC147192
0.8134 Intermediate Similarity NPC118584
0.812 Intermediate Similarity NPC288945
0.8116 Intermediate Similarity NPC215484
0.8106 Intermediate Similarity NPC86900
0.8106 Intermediate Similarity NPC68167
0.8102 Intermediate Similarity NPC476407
0.8102 Intermediate Similarity NPC281798
0.8099 Intermediate Similarity NPC9218
0.8095 Intermediate Similarity NPC280753
0.8095 Intermediate Similarity NPC44378
0.8092 Intermediate Similarity NPC470848
0.8092 Intermediate Similarity NPC470849
0.8085 Intermediate Similarity NPC284409
0.8082 Intermediate Similarity NPC28776
0.8082 Intermediate Similarity NPC473138
0.8082 Intermediate Similarity NPC1580
0.8077 Intermediate Similarity NPC263386
0.8077 Intermediate Similarity NPC141791
0.8074 Intermediate Similarity NPC288416
0.8071 Intermediate Similarity NPC90431
0.8071 Intermediate Similarity NPC255428
0.8069 Intermediate Similarity NPC98356
0.806 Intermediate Similarity NPC79608
0.806 Intermediate Similarity NPC137416
0.806 Intermediate Similarity NPC67951
0.806 Intermediate Similarity NPC127975
0.8056 Intermediate Similarity NPC160378
0.8054 Intermediate Similarity NPC475595
0.8054 Intermediate Similarity NPC473544
0.8054 Intermediate Similarity NPC475162
0.8054 Intermediate Similarity NPC266084
0.8054 Intermediate Similarity NPC83663
0.8054 Intermediate Similarity NPC475216
0.8054 Intermediate Similarity NPC475145
0.8045 Intermediate Similarity NPC285345
0.8042 Intermediate Similarity NPC148080
0.8042 Intermediate Similarity NPC469623
0.8041 Intermediate Similarity NPC477334
0.8029 Intermediate Similarity NPC17968
0.8029 Intermediate Similarity NPC470122
0.8029 Intermediate Similarity NPC469705
0.8028 Intermediate Similarity NPC471875
0.8027 Intermediate Similarity NPC94781
0.8027 Intermediate Similarity NPC42464
0.8016 Intermediate Similarity NPC177576
0.8 Intermediate Similarity NPC160882
0.8 Intermediate Similarity NPC326187
0.8 Intermediate Similarity NPC475528
0.8 Intermediate Similarity NPC113295
0.8 Intermediate Similarity NPC210330
0.8 Intermediate Similarity NPC311742
0.7986 Intermediate Similarity NPC478250
0.7986 Intermediate Similarity NPC472591
0.7986 Intermediate Similarity NPC164172
0.7986 Intermediate Similarity NPC475468
0.7984 Intermediate Similarity NPC260952
0.7973 Intermediate Similarity NPC306343
0.7973 Intermediate Similarity NPC120171
0.7971 Intermediate Similarity NPC478255
0.797 Intermediate Similarity NPC327070
0.797 Intermediate Similarity NPC139171
0.7959 Intermediate Similarity NPC43123
0.7955 Intermediate Similarity NPC98305
0.7945 Intermediate Similarity NPC474268
0.7945 Intermediate Similarity NPC143246
0.7945 Intermediate Similarity NPC475539
0.7945 Intermediate Similarity NPC119773
0.7943 Intermediate Similarity NPC71638
0.7943 Intermediate Similarity NPC64230
0.7939 Intermediate Similarity NPC70084
0.7937 Intermediate Similarity NPC321252
0.7937 Intermediate Similarity NPC63345
0.7937 Intermediate Similarity NPC252544
0.7933 Intermediate Similarity NPC87403
0.7933 Intermediate Similarity NPC44730
0.7931 Intermediate Similarity NPC50221
0.7931 Intermediate Similarity NPC470130

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC108553 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.85 High Similarity NPD6190 Approved
0.8102 Intermediate Similarity NPD6233 Phase 2
0.8029 Intermediate Similarity NPD6798 Discontinued
0.7986 Intermediate Similarity NPD6355 Discontinued
0.7843 Intermediate Similarity NPD7075 Discontinued
0.7842 Intermediate Similarity NPD4062 Phase 3
0.777 Intermediate Similarity NPD3764 Approved
0.7762 Intermediate Similarity NPD2935 Discontinued
0.7671 Intermediate Similarity NPD4628 Phase 3
0.7647 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD6799 Approved
0.76 Intermediate Similarity NPD5403 Approved
0.7597 Intermediate Similarity NPD5402 Approved
0.7586 Intermediate Similarity NPD7266 Discontinued
0.7582 Intermediate Similarity NPD6801 Discontinued
0.7578 Intermediate Similarity NPD2067 Discontinued
0.7571 Intermediate Similarity NPD7095 Approved
0.7566 Intermediate Similarity NPD4380 Phase 2
0.7535 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.7535 Intermediate Similarity NPD4060 Phase 1
0.7534 Intermediate Similarity NPD5958 Discontinued
0.7534 Intermediate Similarity NPD4534 Discontinued
0.7467 Intermediate Similarity NPD5401 Approved
0.7463 Intermediate Similarity NPD9545 Approved
0.7451 Intermediate Similarity NPD6599 Discontinued
0.7448 Intermediate Similarity NPD2799 Discontinued
0.7444 Intermediate Similarity NPD9493 Approved
0.7436 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7432 Intermediate Similarity NPD8166 Discontinued
0.7424 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7424 Intermediate Similarity NPD2629 Approved
0.741 Intermediate Similarity NPD1164 Approved
0.741 Intermediate Similarity NPD1203 Approved
0.7394 Intermediate Similarity NPD2313 Discontinued
0.7389 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7383 Intermediate Similarity NPD3887 Approved
0.7383 Intermediate Similarity NPD2354 Approved
0.7379 Intermediate Similarity NPD7097 Phase 1
0.7376 Intermediate Similarity NPD6832 Phase 2
0.7372 Intermediate Similarity NPD3817 Phase 2
0.7372 Intermediate Similarity NPD1535 Discovery
0.7368 Intermediate Similarity NPD4198 Discontinued
0.7361 Intermediate Similarity NPD230 Phase 1
0.7333 Intermediate Similarity NPD1894 Discontinued
0.7325 Intermediate Similarity NPD3882 Suspended
0.7319 Intermediate Similarity NPD1481 Phase 2
0.7286 Intermediate Similarity NPD2797 Approved
0.7273 Intermediate Similarity NPD3455 Phase 2
0.7266 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD4340 Discontinued
0.7237 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD5647 Approved
0.7229 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7211 Intermediate Similarity NPD1510 Phase 2
0.7211 Intermediate Similarity NPD7033 Discontinued
0.72 Intermediate Similarity NPD3400 Discontinued
0.7195 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7193 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD5049 Phase 3
0.7181 Intermediate Similarity NPD1549 Phase 2
0.7174 Intermediate Similarity NPD3847 Discontinued
0.7172 Intermediate Similarity NPD943 Approved
0.7162 Intermediate Similarity NPD2438 Suspended
0.7162 Intermediate Similarity NPD1551 Phase 2
0.7154 Intermediate Similarity NPD1358 Approved
0.7153 Intermediate Similarity NPD3268 Approved
0.7153 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD1934 Approved
0.7134 Intermediate Similarity NPD3751 Discontinued
0.7134 Intermediate Similarity NPD3818 Discontinued
0.7133 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7123 Intermediate Similarity NPD447 Suspended
0.7117 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD6166 Phase 2
0.7117 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD2344 Approved
0.7114 Intermediate Similarity NPD2353 Approved
0.7114 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD2355 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD6663 Approved
0.7101 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD6232 Discontinued
0.7099 Intermediate Similarity NPD74 Approved
0.7099 Intermediate Similarity NPD9266 Approved
0.7095 Intermediate Similarity NPD4308 Phase 3
0.7089 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD3750 Approved
0.7071 Intermediate Similarity NPD9717 Approved
0.707 Intermediate Similarity NPD7411 Suspended
0.7067 Intermediate Similarity NPD2424 Discontinued
0.7063 Intermediate Similarity NPD9495 Approved
0.7063 Intermediate Similarity NPD5736 Approved
0.7059 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD8434 Phase 2
0.7059 Intermediate Similarity NPD8150 Discontinued
0.7055 Intermediate Similarity NPD1240 Approved
0.7054 Intermediate Similarity NPD1237 Approved
0.705 Intermediate Similarity NPD4135 Approved
0.705 Intermediate Similarity NPD4106 Approved
0.705 Intermediate Similarity NPD4136 Approved
0.7047 Intermediate Similarity NPD1501 Clinical (unspecified phase)
0.7047 Intermediate Similarity NPD5406 Approved
0.7047 Intermediate Similarity NPD5404 Approved
0.7047 Intermediate Similarity NPD5405 Approved
0.7047 Intermediate Similarity NPD5408 Approved
0.7047 Intermediate Similarity NPD6032 Approved
0.7042 Intermediate Similarity NPD1470 Approved
0.704 Intermediate Similarity NPD2859 Approved
0.704 Intermediate Similarity NPD2860 Approved
0.7023 Intermediate Similarity NPD9264 Approved
0.7023 Intermediate Similarity NPD9267 Approved
0.7023 Intermediate Similarity NPD9265 Clinical (unspecified phase)
0.7023 Intermediate Similarity NPD9263 Approved
0.7019 Intermediate Similarity NPD6234 Discontinued
0.7008 Intermediate Similarity NPD3020 Approved
0.7007 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD6797 Phase 2
0.7 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7768 Phase 2
0.7 Intermediate Similarity NPD2346 Discontinued
0.7 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.6993 Remote Similarity NPD7440 Discontinued
0.6993 Remote Similarity NPD2798 Approved
0.6981 Remote Similarity NPD8455 Phase 2
0.6981 Remote Similarity NPD7972 Discontinued
0.6981 Remote Similarity NPD7819 Suspended
0.6981 Remote Similarity NPD2801 Approved
0.6978 Remote Similarity NPD5306 Approved
0.6978 Remote Similarity NPD5305 Approved
0.6974 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6974 Remote Similarity NPD4110 Phase 3
0.6972 Remote Similarity NPD1283 Approved
0.697 Remote Similarity NPD2182 Approved
0.697 Remote Similarity NPD7473 Discontinued
0.6968 Remote Similarity NPD1512 Approved
0.6966 Remote Similarity NPD3027 Phase 3
0.6966 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6966 Remote Similarity NPD2598 Clinical (unspecified phase)
0.6964 Remote Similarity NPD6559 Discontinued
0.6964 Remote Similarity NPD7251 Discontinued
0.6963 Remote Similarity NPD1241 Discontinued
0.696 Remote Similarity NPD2933 Approved
0.696 Remote Similarity NPD2934 Approved
0.6959 Remote Similarity NPD1607 Approved
0.6959 Remote Similarity NPD6653 Approved
0.695 Remote Similarity NPD9269 Phase 2
0.6947 Remote Similarity NPD3134 Approved
0.6944 Remote Similarity NPD9494 Approved
0.6943 Remote Similarity NPD3226 Approved
0.6943 Remote Similarity NPD7458 Discontinued
0.694 Remote Similarity NPD969 Suspended
0.6939 Remote Similarity NPD825 Approved
0.6939 Remote Similarity NPD826 Approved
0.6939 Remote Similarity NPD2979 Phase 3
0.6934 Remote Similarity NPD405 Clinical (unspecified phase)
0.6933 Remote Similarity NPD2796 Approved
0.6928 Remote Similarity NPD2309 Approved
0.6923 Remote Similarity NPD7808 Phase 3
0.6923 Remote Similarity NPD5909 Discontinued
0.6923 Remote Similarity NPD987 Approved
0.6918 Remote Similarity NPD37 Approved
0.6917 Remote Similarity NPD3022 Approved
0.6917 Remote Similarity NPD3021 Approved
0.6906 Remote Similarity NPD4102 Approved
0.6906 Remote Similarity NPD4105 Approved
0.6903 Remote Similarity NPD7410 Clinical (unspecified phase)
0.6897 Remote Similarity NPD2614 Approved
0.6894 Remote Similarity NPD4965 Approved
0.6894 Remote Similarity NPD4967 Phase 2
0.6894 Remote Similarity NPD4966 Approved
0.6892 Remote Similarity NPD1933 Approved
0.689 Remote Similarity NPD3787 Discontinued
0.6889 Remote Similarity NPD7843 Approved
0.6889 Remote Similarity NPD5535 Approved
0.6884 Remote Similarity NPD5536 Phase 2
0.6882 Remote Similarity NPD8312 Approved
0.6882 Remote Similarity NPD8313 Approved
0.6879 Remote Similarity NPD4806 Approved
0.6879 Remote Similarity NPD4807 Approved
0.6875 Remote Similarity NPD1238 Approved
0.6875 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6871 Remote Similarity NPD520 Approved
0.687 Remote Similarity NPD5048 Discontinued
0.6867 Remote Similarity NPD651 Clinical (unspecified phase)
0.6866 Remote Similarity NPD2181 Clinical (unspecified phase)
0.6864 Remote Similarity NPD7685 Pre-registration
0.6863 Remote Similarity NPD7003 Approved
0.6861 Remote Similarity NPD7157 Approved
0.6859 Remote Similarity NPD6273 Approved
0.6853 Remote Similarity NPD1876 Approved
0.6853 Remote Similarity NPD3225 Approved
0.6852 Remote Similarity NPD3749 Approved
0.6845 Remote Similarity NPD7074 Phase 3
0.6842 Remote Similarity NPD2897 Discontinued
0.6842 Remote Similarity NPD970 Clinical (unspecified phase)
0.6842 Remote Similarity NPD2684 Approved
0.6839 Remote Similarity NPD1511 Approved

Structure

External Identifiers

PubChem CID   46210731
ChEMBL   CHEMBL1096631
ZINC  

Physicochemical Properties

Molecular Weight:  402.10
ALogP:  -1.7113
MLogP:  2.67
XLogP:  1.825
# Rotatable Bonds:  14
Polar Surface Area:  161.59
# H-Bond Aceptor:  7
# H-Bond Donor:  5
# Rings:  2
# Heavy Atoms:  29

Download Data

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Biological Activities  
Similar NPs/Drugs