NPASS Compound

Natural Product: NPC482915

Natural Product ID	NPC482915
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	RTDUSTYBGFBJCI-RFHSYXIGSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	44567143
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000279] Alkaloids and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 121127 0 0 0 0 0 0 0 0999 V2000 5.1395 1.2971 3.2208 C 0 0 0 0 0 0 0 0 0 0 0 0 5.1503 1.0975 1.7621 C 0 0 1 0 0 0 0 0 0 0 0 0 4.3896 2.1907 0.9806 C 0 0 2 0 0 0 0 0 0 0 0 0 4.7213 3.5688 1.3642 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0181 1.7830 0.7742 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6569 0.7817 1.5080 O 0 0 0 0 0 0 0 0 0 0 0 0 2.0245 2.2591 -0.0942 O 0 0 0 0 0 0 0 0 0 0 0 0 0.8617 1.4422 -0.0769 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3578 1.7148 -0.7679 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.1421 0.3772 -0.9352 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.5055 -0.9112 -0.6867 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.3128 -1.5476 0.4339 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6571 -1.6807 -0.1138 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.6408 -2.2654 0.6875 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3383 -2.6487 1.8388 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.0145 -2.4199 0.1602 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6598 -2.0329 -1.6963 C 0 0 1 0 0 0 0 0 0 0 0 0 0.0319 -3.2753 -1.1322 C 0 0 1 0 0 0 0 0 0 0 0 0 1.0913 -3.1356 -0.1578 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2315 -1.7672 0.5890 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9924 -0.9659 -0.5497 C 0 0 2 0 0 0 0 0 0 0 0 0 1.4351 0.3183 -1.0271 C 0 0 2 0 0 0 0 0 0 0 0 0 2.7680 0.5860 -1.5463 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7272 0.4764 -2.2931 O 0 0 0 0 0 0 0 0 0 0 0 0 1.7414 -1.7051 -1.5221 O 0 0 0 0 0 0 0 0 0 0 0 0 2.3787 -2.7606 -1.0048 C 0 0 2 0 0 0 0 0 0 0 0 0 2.4994 -3.7546 -2.1680 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5438 -2.8648 -0.1919 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5193 -2.0279 0.2150 O 0 0 0 0 0 0 0 0 0 0 0 0 5.5188 -1.3054 -0.3234 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5616 -1.4560 -1.6039 O 0 0 0 0 0 0 0 0 0 0 0 0 6.5036 -0.4349 0.2448 C 0 0 0 0 0 0 0 0 0 0 0 0 7.8052 -0.7203 -0.2121 C 0 0 0 0 0 0 0 0 0 0 0 0 8.8706 0.0232 0.2059 C 0 0 0 0 0 0 0 0 0 0 0 0 8.7291 1.0662 1.0757 C 0 0 0 0 0 0 0 0 0 0 0 0 7.4870 1.3221 1.4988 N 0 0 0 0 0 0 0 0 0 0 0 0 6.3842 0.6179 1.1201 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6198 -1.7171 1.7890 O 0 0 0 0 0 0 0 0 0 0 0 0 1.2190 -1.7286 3.0004 C 0 0 0 0 0 0 0 0 0 0 0 0 2.4708 -1.7976 3.1054 O 0 0 0 0 0 0 0 0 0 0 0 0 0.4465 -1.6610 4.2934 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9445 -4.2928 -0.8397 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1831 -5.4134 -1.5671 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4708 -5.5825 -2.6160 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.2107 -6.4375 -1.2160 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9933 -2.3137 -2.0410 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.5191 -2.1440 -3.3077 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7610 -1.7130 -4.2085 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.9360 -2.4612 -3.5954 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4023 0.5626 -0.2606 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.6149 0.7443 -0.8660 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6643 0.7508 -2.0958 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.8667 0.9338 -0.1480 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.7980 0.9290 1.2317 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.9363 1.1006 2.0177 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.1530 1.2785 1.4146 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.1954 1.2795 0.0285 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.0624 1.1087 -0.7539 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2470 2.6929 -0.3419 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6814 3.7958 -1.0028 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1715 3.8824 -2.1578 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.6128 4.7823 -0.4918 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9704 5.8466 -1.2838 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8540 6.8259 -0.8382 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.3925 6.7359 0.4334 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.1921 7.5838 0.8926 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.0339 5.6903 1.1955 N 0 0 0 0 0 0 0 0 0 0 0 0 -4.5685 5.5405 2.5539 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1663 4.7275 0.7590 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5272 2.3047 3.5109 H 0 0 0 0 0 0 0 0 0 0 0 0 5.6672 0.4800 3.7064 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0850 1.2767 3.5672 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4206 0.1800 1.6140 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8831 2.0796 -0.0788 H 0 0 0 0 0 0 0 0 0 0 0 0 4.6170 3.7968 2.4456 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7908 3.7768 1.0763 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1220 4.2592 0.7443 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7566 0.8897 0.8940 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1031 2.0935 -1.7889 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4730 0.3814 -1.9944 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4404 -0.9481 1.3289 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.1172 -2.5680 0.6800 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1425 -1.8789 -0.7881 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1725 -3.5017 -0.0891 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7799 -2.1680 0.9261 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1807 -1.6705 -2.6299 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4592 -3.7211 -2.0790 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2558 -3.9770 0.4650 H 0 0 0 0 0 0 0 0 0 0 0 0 2.3214 -1.7530 0.8974 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5687 0.2634 -0.9284 H 0 0 0 0 0 0 0 0 0 0 0 0 2.9056 -0.0182 -2.5071 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8341 1.6307 -1.9225 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2741 0.1213 -2.9969 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1786 -4.7687 -1.8882 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1483 -3.3733 -3.1269 H 0 0 0 0 0 0 0 0 0 0 0 0 3.6168 -3.8761 -2.3448 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2566 -3.4536 0.7622 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2204 -3.7337 -0.6197 H 0 0 0 0 0 0 0 0 0 0 0 0 7.9590 -1.5652 -0.9239 H 0 0 0 0 0 0 0 0 0 0 0 0 9.8806 -0.2076 -0.1560 H 0 0 0 0 0 0 0 0 0 0 0 0 9.5960 1.6490 1.3972 H 0 0 0 0 0 0 0 0 0 0 0 0 0.9865 -0.9808 4.9544 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5774 -1.3016 4.0435 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4386 -2.6901 4.7057 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9525 -7.3891 -1.7481 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1637 -6.0952 -1.6763 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.2867 -6.5846 -0.1192 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0983 -2.6961 -4.6669 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2545 -3.3737 -3.0308 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6124 -1.6454 -3.2747 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8731 0.7943 1.7788 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.8983 1.0993 3.0969 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.0415 1.4127 2.0292 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.1372 1.4172 -0.4792 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1172 1.1127 -1.8317 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5819 5.9656 -2.2846 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.1489 7.6718 -1.4430 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7140 5.8348 3.2208 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3820 6.2469 2.7269 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9140 4.5273 2.7598 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.9143 3.9026 1.4266 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 3 5 1 0 5 6 2 0 5 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 1 1 12 13 1 0 13 14 1 0 14 15 2 0 14 16 1 0 11 17 1 0 17 18 1 0 18 19 1 0 19 20 1 0 20 21 1 0 21 22 1 0 22 23 1 0 22 24 1 6 21 25 1 6 25 26 1 0 26 27 1 6 26 28 1 0 28 29 1 0 29 30 1 0 30 31 2 0 30 32 1 0 32 33 2 0 33 34 1 0 34 35 2 0 35 36 1 0 36 37 2 0 20 38 1 0 38 39 1 0 39 40 2 0 39 41 1 0 18 42 1 0 42 43 1 0 43 44 2 0 43 45 1 0 17 46 1 0 46 47 1 0 47 48 2 0 47 49 1 0 10 50 1 0 50 51 1 0 51 52 2 0 51 53 1 0 53 54 2 0 54 55 1 0 55 56 2 0 56 57 1 0 57 58 2 0 9 59 1 0 59 60 1 0 60 61 2 0 60 62 1 0 62 63 1 0 63 64 2 0 64 65 1 0 65 66 2 0 65 67 1 0 67 68 1 0 67 69 1 0 37 2 1 0 58 53 1 0 69 62 2 0 22 8 1 0 37 32 1 0 21 11 1 0 26 19 1 0 1 70 1 0 1 71 1 0 1 72 1 0 2 73 1 1 3 74 1 6 4 75 1 0 4 76 1 0 4 77 1 0 8 78 1 0 9 79 1 6 10 80 1 6 12 81 1 0 12 82 1 0 16 83 1 0 16 84 1 0 16 85 1 0 17 86 1 6 18 87 1 6 19 88 1 0 20 89 1 0 23 90 1 0 23 91 1 0 23 92 1 0 24 93 1 0 27 94 1 0 27 95 1 0 27 96 1 0 28 97 1 0 28 98 1 0 33 99 1 0 34100 1 0 35101 1 0 41102 1 0 41103 1 0 41104 1 0 45105 1 0 45106 1 0 45107 1 0 49108 1 0 49109 1 0 49110 1 0 54111 1 0 55112 1 0 56113 1 0 57114 1 0 58115 1 0 63116 1 0 64117 1 0 68118 1 0 68119 1 0 68120 1 0 69121 1 0 M END

Standard InCHIKey	RTDUSTYBGFBJCI-RFHSYXIGSA-N
Standard InCHI	InChI=1S/C48H52N2O19/c1-23-24(2)41(56)67-38-36(66-43(58)30-17-18-32(55)50(9)20-30)40(68-42(57)29-14-11-10-12-15-29)47(22-61-25(3)51)39(65-28(6)54)35(63-26(4)52)33-37(64-27(5)53)48(47,46(38,8)60)69-45(33,7)21-62-44(59)31-16-13-19-49-34(23)31/h10-20,23-24,33,35-40,60H,21-22H2,1-9H3/t23-,24-,33?,35+,36-,37?,38?,39+,40-,45-,46-,47+,48-/m0/s1
SMILES	C[C@H]1[C@H](C)C(=O)OC2[C@@H]([C@@H]([C@@]3(COC(=O)C)[C@@H]([C@@H](C4C([C@@]3([C@@]2(C)O)O[C@@]4(C)COC(=O)c2cccnc12)OC(=O)C)OC(=O)C)OC(=O)C)OC(=O)c1ccccc1)OC(=O)c1ccc(=O)n(C)c1

Calculated Properties

Physi-Chem Properties

Molecular Weight:	960.32	Volume:	923.057 ? Van der Waals volume.
Dense:	1.04	LogP:	1.209 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	1.697 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.849 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	15.0	Rigid Bonds:	50.0
TPSA:	274.75 ? Topological Polar Surface Area.	H-Bond Acceptor:	21.0
H-Bond Donor:	1.0	Rings:	7.0
Heavy Atoms:	21.0

MedChem Properties

QED Drug-Likeness Score:	0.238	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	7.803	Fsp³:	0.5
MCE-18:	245.778 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.627	Fluc inhibitor:	0.001 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.006 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.409 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.002	Promiscuous compounds:	0.004

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.552	MDCK Permeability:	-5.025
Pgp-inhibitor:	0.551	Pgp-substrate:	0.008
PAMPA:	0.988 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.003	30% Bioavailability (F30%):	0.011
50% Bioavailability (F50%):	0.837

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.006	MRP1:	1.0
Plasma Protein Binding (PPB):	56.448%	Volume Distribution (VD):	-0.249
Fu:	41.299% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	1.0	BCRP inhibitor:	0.0
BSEP inhibitor:	0.967

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.0	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.0
CYP3A4-inhibitor:	0.0	CYP3A4-substrate:	0.0
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.973
HLM stability:	0.423 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

0.317

Half-life (T1/2):

1.38

ADMET: Toxicity

hERG Blockers:	0.005	hERG Blockers (10um):	0.049
Human Hepatotoxicity (H-HT):	0.252	Drug-induced Liver Injury (DILI):	0.994
AMES Toxicity:	0.966	Rat Oral Acute Toxicity:	0.28
Maximum Recommended Daily Dose:	0.535	Skin Sensitization:	0.999
Carcinogencity:	0.777	Eye Corrosion:	0.0
Eye Irritation:	0.014	Respiratory Toxicity:	0.035
Drug-induced Neurotoxicity:	0.871	Ototoxicity:	0.769
Hematotoxicity:	0.786	Drug-induced Nephrotoxicity:	0.994
Genotoxicity:	0.997	RPMI-8226 Immunitoxicity:	0.354
A549 Cytotoxicity:	0.28	Hek293 Cytotoxicity:	0.48
BCF:	0.536 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.547 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	4.998 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.663 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO22142	Hippocratea excelsa	Species	n.a.	n.a.	root bark	n.a.	n.a.	PMID[17385912]
NPO22142	Hippocratea excelsa	Species	n.a.	n.a.	n.a.	root	n.a.	PMID[17385912]
NPO22142	Hippocratea excelsa	Species	n.a.	n.a.	n.a.	n.a.	n.a.	PMID[2292687]
NPO22142	Hippocratea excelsa	Species	n.a.	n.a.	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
ED50	4

Activity Type	# Activity
Cell line	3
Non-molecular	1

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT81	Cell line	A549	Homo sapiens	ED50	>	10.0	ug ml-1	PMID[2292687]
NPT139	Cell line	HT-29	Homo sapiens	ED50	>	10.0	ug ml-1	PMID[2292687]
NPT83	Cell line	MCF7	Homo sapiens	ED50	>	10.0	ug ml-1	PMID[2292687]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	ED50	=	1.85	10'-1 ug/ml	PMID[2292687]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference
-	Artemia	LC50	=	212.0	ug.mL-1	PMID[2292687]

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC482915 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	24301
0.1-0.2	24464
0.2-0.3	869
0.3-0.4	139
0.4-0.5	25
0.5-0.6	21
0.6-0.7	22
0.7-0.8	0
0.8-0.85	5
0.85-0.9	0
0.9-0.95	2
0.95-1	1

Similarity Score	Similarity Level	Natural Product ID
0.9714	High Similarity	NPC483854
0.9048	High Similarity	NPC483853
0.9048	High Similarity	NPC608314
0.8482	Intermediate Similarity	NPC483856
0.8381	Intermediate Similarity	NPC475600
0.8302	Intermediate Similarity	NPC476110
0.8174	Intermediate Similarity	NPC483855
0.8113	Intermediate Similarity	NPC475303
0.7963	Intermediate Similarity	NPC475596
0.7857	Intermediate Similarity	NPC327769
0.7706	Intermediate Similarity	NPC87152
0.7706	Intermediate Similarity	NPC475631
0.729	Intermediate Similarity	NPC76565
0.729	Intermediate Similarity	NPC601313
0.7207	Intermediate Similarity	NPC326930
0.7105	Intermediate Similarity	NPC475644
0.6842	Remote Similarity	NPC475301
0.6842	Remote Similarity	NPC122968
0.6842	Remote Similarity	NPC228377
0.681	Remote Similarity	NPC30456
0.681	Remote Similarity	NPC488904
0.678	Remote Similarity	NPC477787
0.6723	Remote Similarity	NPC170751
0.6695	Remote Similarity	NPC475406
0.6638	Remote Similarity	NPC471977
0.6496	Remote Similarity	NPC316841
0.6471	Remote Similarity	NPC473689
0.6471	Remote Similarity	NPC292416
0.6446	Remote Similarity	NPC328928
0.6311	Remote Similarity	NPC327904
0.6271	Remote Similarity	NPC328186
0.6261	Remote Similarity	NPC475498
0.6218	Remote Similarity	NPC470486
0.6098	Remote Similarity	NPC319880
0.6098	Remote Similarity	NPC320324
0.6032	Remote Similarity	NPC475426
0.6016	Remote Similarity	NPC244839
0.6	Remote Similarity	NPC35208
0.592	Remote Similarity	NPC38959
0.5902	Remote Similarity	NPC471190
0.5862	Remote Similarity	NPC250807
0.5862	Remote Similarity	NPC57797
0.5833	Remote Similarity	NPC53255
0.5833	Remote Similarity	NPC85879
0.5748	Remote Similarity	NPC471979
0.5691	Remote Similarity	NPC328154
0.5678	Remote Similarity	NPC475137
0.5635	Remote Similarity	NPC475648
0.5635	Remote Similarity	NPC601643
0.5565	Remote Similarity	NPC477788
0.5537	Remote Similarity	NPC146824
0.552	Remote Similarity	NPC13603
0.5512	Remote Similarity	NPC253482
0.541	Remote Similarity	NPC473833
0.5271	Remote Similarity	NPC600583
0.525	Remote Similarity	NPC470306
0.5242	Remote Similarity	NPC473506
0.5077	Remote Similarity	NPC600607
0.5039	Remote Similarity	NPC324619

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC482915 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	4764
0.1-0.2	4356
0.2-0.3	30
0.3-0.4	0
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data