NPASS Compound

Natural Product: NPC475137

Natural Product ID	NPC475137
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	Neoeuonymine
IUPAC Name	n.a.
Synonyms	Neoeuonymine
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	CHEMBL499170
PubChem CID	44583775
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000279] Alkaloids and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 99103 0 0 0 0 0 0 0 0999 V2000 -6.4611 0.9220 1.2313 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.2544 0.0203 1.2143 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.3582 -1.1233 0.7390 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.1057 0.4596 1.7048 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.8219 -0.0167 1.8487 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9027 -0.1281 0.7055 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.7651 1.3046 0.1543 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.0870 2.2813 1.1246 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.1077 3.1894 0.9964 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.7946 3.1354 -0.0634 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3484 4.1593 2.0727 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3861 1.6434 -0.3125 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.4331 3.0564 -0.5945 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1967 3.5513 -1.8653 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0630 2.7306 -2.7793 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.2351 4.9945 -2.1973 C 0 0 0 0 0 0 0 0 0 0 0 0 0.6762 1.4658 0.7396 C 0 0 1 0 0 0 0 0 0 0 0 0 0.3658 0.3798 1.7570 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.4992 -0.6191 1.0951 C 0 0 2 0 0 0 0 0 0 0 0 0 0.1797 -0.8062 -0.1468 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3927 -2.1189 -0.3825 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.6993 -2.7870 0.3863 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.1010 -2.4836 -0.1505 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.2562 -1.0308 -0.4317 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.3293 -0.5872 -1.1432 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3880 -0.0551 -2.4012 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2982 0.0452 -3.0055 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.6124 0.4000 -3.0856 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9851 -3.0403 0.7688 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.7828 -4.0966 0.4429 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.7169 -4.5789 -0.7175 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.7304 -4.6822 1.4513 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6484 -1.9505 1.6864 C 0 0 1 0 0 0 0 0 0 0 0 0 0.3566 -2.3479 2.5445 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3314 -2.3379 -1.8857 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7247 -2.6842 -0.0064 C 0 0 0 0 0 0 0 0 0 0 0 0 2.8076 -1.9676 -0.6232 O 0 0 0 0 0 0 0 0 0 0 0 0 4.1051 -2.3785 -0.3809 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2724 -3.3736 0.3729 O 0 0 0 0 0 0 0 0 0 0 0 0 5.3121 -1.7767 -0.9101 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5915 -0.4308 -0.8391 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5779 0.4360 -0.1940 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8897 1.3089 -1.2556 C 0 0 0 0 0 0 0 0 0 0 0 0 2.7666 1.9930 -0.5139 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6461 3.2044 -0.3621 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8407 1.1406 0.0050 O 0 0 0 0 0 0 0 0 0 0 0 0 4.7785 2.3867 -1.7659 C 0 0 0 0 0 0 0 0 0 0 0 0 5.2135 1.3281 0.8631 C 0 0 0 0 0 0 0 0 0 0 0 0 6.7464 -0.0001 -1.3555 N 0 0 0 0 0 0 0 0 0 0 0 0 7.6728 -0.7719 -1.9463 C 0 0 0 0 0 0 0 0 0 0 0 0 7.4056 -2.1200 -2.0238 C 0 0 0 0 0 0 0 0 0 0 0 0 6.2367 -2.6151 -1.5103 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0690 0.8427 3.1161 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6120 -0.3210 1.8958 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.0505 0.6723 0.3331 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1430 1.9815 1.1969 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.0141 0.7888 2.1785 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.9998 -1.0307 2.3682 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3861 0.5644 2.7083 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.4953 1.4528 -0.6715 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9883 5.0083 1.7707 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.4013 4.5690 2.4732 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8624 3.6779 2.9536 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1305 1.1804 -1.2891 H 0 0 0 0 0 0 0 0 0 0 0 0 0.6106 5.2020 -2.8810 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.1703 5.1788 -2.7807 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.2732 5.6430 -1.3150 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8526 2.4123 1.2631 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5587 -3.8481 0.5834 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.1944 -3.0366 -1.0844 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3632 -0.8286 -1.1620 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4808 0.1858 -4.1864 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7611 1.4954 -3.0263 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4835 -0.1898 -2.7650 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4313 -5.3895 0.9945 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3481 -3.8619 1.9153 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.1814 -5.1520 2.2751 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5848 -2.1708 2.2204 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2321 -3.2897 2.7597 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5807 -2.7648 -2.2700 H 0 0 0 0 0 0 0 0 0 0 0 0 1.1405 -3.0392 -2.2543 H 0 0 0 0 0 0 0 0 0 0 0 0 0.5491 -1.4018 -2.4486 H 0 0 0 0 0 0 0 0 0 0 0 0 1.9413 -2.8850 1.0200 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7775 -3.6938 -0.5277 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8661 -0.1977 0.3514 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4119 0.6806 -2.0203 H 0 0 0 0 0 0 0 0 0 0 0 0 5.8048 2.0725 -2.0119 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8154 3.1962 -1.0078 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3180 2.8209 -2.6765 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4115 2.0197 1.1979 H 0 0 0 0 0 0 0 0 0 0 0 0 6.1043 1.8426 0.5003 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4482 0.6769 1.7301 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6030 -0.3462 -2.3499 H 0 0 0 0 0 0 0 0 0 0 0 0 8.1217 -2.7932 -2.4926 H 0 0 0 0 0 0 0 0 0 0 0 0 5.9881 -3.6907 -1.5502 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4615 1.8040 3.2360 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0618 1.0657 3.6379 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3283 0.0059 3.7135 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2853 0.2630 2.3060 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 0 2 4 1 0 4 5 1 0 6 5 1 1 6 7 1 0 7 8 1 0 8 9 1 0 9 10 2 0 9 11 1 0 7 12 1 0 12 13 1 0 13 14 1 0 14 15 2 0 14 16 1 0 12 17 1 0 17 18 1 0 18 19 1 0 19 20 1 6 20 21 1 0 21 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 1 0 26 27 2 0 26 28 1 0 23 29 1 0 29 30 1 0 30 31 2 0 30 32 1 0 22 33 1 0 33 34 1 0 21 35 1 6 21 36 1 0 36 37 1 0 37 38 1 0 38 39 2 0 38 40 1 0 40 41 2 0 41 42 1 0 42 43 1 0 43 44 1 0 44 45 2 0 44 46 1 0 43 47 1 0 42 48 1 0 41 49 1 0 49 50 2 0 50 51 1 0 51 52 2 0 18 53 1 0 18 54 1 1 24 6 1 0 52 40 1 0 19 6 1 0 46 17 1 0 33 19 1 0 1 55 1 0 1 56 1 0 1 57 1 0 5 58 1 0 5 59 1 0 7 60 1 6 11 61 1 0 11 62 1 0 11 63 1 0 12 64 1 6 16 65 1 0 16 66 1 0 16 67 1 0 17 68 1 1 22 69 1 1 23 70 1 6 24 71 1 6 28 72 1 0 28 73 1 0 28 74 1 0 32 75 1 0 32 76 1 0 32 77 1 0 33 78 1 1 34 79 1 0 35 80 1 0 35 81 1 0 35 82 1 0 36 83 1 0 36 84 1 0 42 85 1 0 43 86 1 0 47 87 1 0 47 88 1 0 47 89 1 0 48 90 1 0 48 91 1 0 48 92 1 0 50 93 1 0 51 94 1 0 52 95 1 0 53 96 1 0 53 97 1 0 53 98 1 0 54 99 1 0 M END

Standard InCHIKey	NKTOESKXBIEREY-PSPDKWEVSA-N
Standard InCHI	InChI=1S/C36H45NO17/c1-15-16(2)31(44)53-28-26(50-19(5)40)30(52-21(7)42)35(14-47-17(3)38)29(51-20(6)41)25(49-18(4)39)23-27(43)36(35,34(28,9)46)54-33(23,8)13-48-32(45)22-11-10-12-37-24(15)22/h10-12,15-16,23,25-30,43,46H,13-14H2,1-9H3/t15?,16?,23-,25-,26+,27-,28+,29-,30+,33+,34+,35-,36+/m1/s1
SMILES	CC(=O)OC[C@]12[C@@H](OC(=O)C)[C@@H](OC(=O)C)[C@H]3[C@]([C@@]42O[C@@]([C@H]([C@H]([C@H]1OC(=O)C)OC(=O)C)[C@H]4O)(C)COC(=O)c1c(C(C(C(=O)O3)C)C)nccc1)(C)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	763.27	Volume:	722.496 ? Van der Waals volume.
Dense:	1.056	LogP:	0.305 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	0.909 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-2.382 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	11.0	Rigid Bonds:	36.0
TPSA:	246.68 ? Topological Polar Surface Area.	H-Bond Acceptor:	18.0
H-Bond Donor:	2.0	Rings:	5.0
Heavy Atoms:	18.0

MedChem Properties

QED Drug-Likeness Score:	0.295	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	7.54	Fsp³:	0.667
MCE-18:	201.0 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.633	Fluc inhibitor:	0.003 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.008 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.064 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.009	Promiscuous compounds:	0.397

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.59	MDCK Permeability:	-5.024
Pgp-inhibitor:	0.05	Pgp-substrate:	0.091
PAMPA:	0.948 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.006	30% Bioavailability (F30%):	0.091
50% Bioavailability (F50%):	0.891

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.057	MRP1:	1.0
Plasma Protein Binding (PPB):	19.517%	Volume Distribution (VD):	-0.417
Fu:	78.913% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	0.929	BCRP inhibitor:	0.0
BSEP inhibitor:	0.827

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.004	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.0
CYP3A4-inhibitor:	0.782	CYP3A4-substrate:	0.0
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.974
HLM stability:	0.182 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

0.748

Half-life (T1/2):

1.679

ADMET: Toxicity

hERG Blockers:	0.001	hERG Blockers (10um):	0.034
Human Hepatotoxicity (H-HT):	0.513	Drug-induced Liver Injury (DILI):	0.97
AMES Toxicity:	0.989	Rat Oral Acute Toxicity:	0.296
Maximum Recommended Daily Dose:	0.651	Skin Sensitization:	1.0
Carcinogencity:	0.686	Eye Corrosion:	0.0
Eye Irritation:	0.184	Respiratory Toxicity:	0.204
Drug-induced Neurotoxicity:	0.273	Ototoxicity:	0.776
Hematotoxicity:	0.962	Drug-induced Nephrotoxicity:	0.997
Genotoxicity:	0.968	RPMI-8226 Immunitoxicity:	0.528
A549 Cytotoxicity:	0.46	Hek293 Cytotoxicity:	0.103
BCF:	0.485 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.059 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	4.439 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.19 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1016/0031-9422(90)85349-K]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	DOI[10.1186/1471-2202-6-1]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[10579865]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	leaf	n.a.	PMID[10716597]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[10757718]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11374948]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11561442]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[12579877]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[1375626]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[1375626]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[1602302]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[1602302]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[16864458]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	roots	n.a.	n.a.	PMID[16989518]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[17250858]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17265278]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[1823717]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	leaf	n.a.	PMID[1823717]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18554602]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	bark	n.a.	PMID[18996177]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	root	n.a.	n.a.	PMID[21486005]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[21486005]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21514608]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	dried roots	purchased from Sichuan Neautus Traditional Chinese Medicine Co. Ltd. (Chengdu, P.R. China)	n.a.	PMID[22148431]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	leaves	n.a.	n.a.	PMID[23268606]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[23852638]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[24549173]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[24963543]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[25237706]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	bark	n.a.	PMID[2534610]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	PMID[2816380]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	Leaves	n.a.	n.a.	PMID[29355322]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	Leaves	n.a.	n.a.	PMID[31556299]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[7102323]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[7304185]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[8699928]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[8722541]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[Article]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	root	n.a.	Database[Article]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO13661	Tripterygium wilfordii	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	2
EC50	2

Activity Type	# Activity
Cell line	2
Organism	2

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT759	Cell line	H9	Homo sapiens	IC50	>	100.0	ug.mL-1	PMID[19150600]
NPT24	Organism	Human immunodeficiency virus 1	Human immunodeficiency virus 1	EC50	=	0.884	ug.mL-1	Open TG-GATES in vivo data: Hematology
NPT24	Organism	Human immunodeficiency virus 1	Human immunodeficiency virus 1	EC50	=	0.88	ug.mL-1	PMID[18419154]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC475137 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	20351
0.1-0.2	28618
0.2-0.3	767
0.3-0.4	44
0.4-0.5	24
0.5-0.6	25
0.6-0.7	18
0.7-0.8	0
0.8-0.85	0
0.85-0.9	2
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.8681	High Similarity	NPC470486
0.8681	High Similarity	NPC471977
0.7889	Intermediate Similarity	NPC473850
0.7629	Intermediate Similarity	NPC471190
0.7609	Intermediate Similarity	NPC76565
0.7609	Intermediate Similarity	NPC601313
0.7128	Intermediate Similarity	NPC35208
0.7071	Intermediate Similarity	NPC475301
0.7	Intermediate Similarity	NPC475631
0.6947	Remote Similarity	NPC475408
0.6893	Remote Similarity	NPC237702
0.6832	Remote Similarity	NPC87152
0.68	Remote Similarity	NPC326930
0.6765	Remote Similarity	NPC475596
0.6765	Remote Similarity	NPC476110
0.6667	Remote Similarity	NPC475600
0.6569	Remote Similarity	NPC475303
0.6566	Remote Similarity	NPC475498
0.6449	Remote Similarity	NPC328928
0.6337	Remote Similarity	NPC473833
0.6239	Remote Similarity	NPC327769
0.6239	Remote Similarity	NPC483853
0.6239	Remote Similarity	NPC608314
0.6226	Remote Similarity	NPC30456
0.6226	Remote Similarity	NPC475644
0.6226	Remote Similarity	NPC488904
0.6126	Remote Similarity	NPC475426
0.5941	Remote Similarity	NPC250807
0.5941	Remote Similarity	NPC57797
0.5862	Remote Similarity	NPC483856
0.5726	Remote Similarity	NPC483854
0.5678	Remote Similarity	NPC482915
0.5676	Remote Similarity	NPC600546
0.5619	Remote Similarity	NPC471015
0.5566	Remote Similarity	NPC146824
0.5505	Remote Similarity	NPC328186
0.55	Remote Similarity	NPC483855
0.5351	Remote Similarity	NPC319880
0.5351	Remote Similarity	NPC320324
0.5351	Remote Similarity	NPC477787
0.5321	Remote Similarity	NPC53255
0.5321	Remote Similarity	NPC85879
0.5315	Remote Similarity	NPC316841
0.5263	Remote Similarity	NPC244839
0.5263	Remote Similarity	NPC600583
0.5238	Remote Similarity	NPC470306
0.5225	Remote Similarity	NPC122968
0.5225	Remote Similarity	NPC228377
0.5172	Remote Similarity	NPC327904
0.5172	Remote Similarity	NPC38959
0.5091	Remote Similarity	NPC473506
0.5043	Remote Similarity	NPC611166

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC475137 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	4533
0.1-0.2	4594
0.2-0.3	23
0.3-0.4	0
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data