Natural Product: NPC46451

Natural Product IDNPC46451
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Sanguinarium
IUPAC Name n.a.
Synonyms Sanguinarine
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL417799
PubChem CID 5154
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0002665] Benzophenanthridine alkaloids
        • [CHEMONTID:0002669] Quaternary benzophenanthridine alkaloids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey INVGWHRKADIJHF-UHFFFAOYSA-N
Standard InCHI InChI=1S/C20H14NO4/c1-21-8-15-12(4-5-16-20(15)25-10-22-16)13-3-2-11-6-17-18(24-9-23-17)7-14(11)19(13)21/h2-8H,9-10H2,1H3/q+1
SMILES C[n+]1cc2c3OCOc3ccc2c2c1c1cc3OCOc3cc1cc2

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   332.09 Volume:   326.885
?
Van der Waals volume.
Dense:   1.016 LogP:   3.607
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.277
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -5.74
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   0.0 Rigid Bonds:   29.0
TPSA:   40.8
?
Topological Polar Surface Area.
H-Bond Acceptor:   5.0
H-Bond Donor:   0.0 Rings:   6.0
Heavy Atoms:   5.0

MedChem Properties

QED Drug-Likeness Score:   0.365 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   2.899 Fsp3:   0.15
MCE-18:   63.043
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.938 Fluc inhibitor:   0.099
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.903
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.549
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.079 Promiscuous compounds:   0.45

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.975 MDCK Permeability:   -4.711
Pgp-inhibitor:   0.0 Pgp-substrate:   1.0
PAMPA:   0.673
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.014
20% Bioavailability (F20%):   0.721 30% Bioavailability (F30%):   0.327
50% Bioavailability (F50%):   0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.012 MRP1:   0.933
Plasma Protein Binding (PPB):   65.112% Volume Distribution (VD):   0.104
Fu: 37.877%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.0
OATP1B3 inhibitor:   0.0 BCRP inhibitor:   0.004
BSEP inhibitor:   0.67

ADMET: Metabolism

CYP1A2-inhibitor:   1.0 CYP1A2-substrate:   1.0
CYP2C19-inhibitor:   0.999 CYP2C19-substrate:   0.028
CYP2C9-inhibitor:   1.0 CYP2C9-substrate:   1.0
CYP2D6-inhibitor:   1.0 CYP2D6-substrate:   1.0
CYP3A4-inhibitor:   0.115 CYP3A4-substrate:   1.0
CYP2B6-substrate:   0.94 CYP2C8-inhibitor:   0.0
HLM stability:   0.212
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  2.912 Half-life (T1/2):  0.558

ADMET: Toxicity

hERG Blockers:  0.425 hERG Blockers (10um):  0.562
Human Hepatotoxicity (H-HT):  0.161 Drug-induced Liver Injury (DILI):  0.819
AMES Toxicity:  0.808 Rat Oral Acute Toxicity:  0.826
Maximum Recommended Daily Dose:  0.934 Skin Sensitization:  0.925
Carcinogencity:  0.917 Eye Corrosion:  0.001
Eye Irritation:  0.931 Respiratory Toxicity:  0.913
Drug-induced Neurotoxicity:  0.425 Ototoxicity:  0.154
Hematotoxicity:  0.121 Drug-induced Nephrotoxicity:  0.302
Genotoxicity:  0.998 RPMI-8226 Immunitoxicity:  0.174
A549 Cytotoxicity:  0.015 Hek293 Cytotoxicity:  0.863
BCF:   1.981
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.413
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   6.212
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   5.662
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO64711 Macleaya cordata + Fusarium proliferatum symbiont Species n.a. n.a. n.a. n.a. n.a. PMID[ 24166154]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. DOI[10.1042/BA20020118]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. DOI[10.1556/abot.45.2003.3-4.15]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. DOI[10.5012/bkcs.2003.24.11.1699]
NPO24024 Fusarium semitectum Species Nectriaceae Eukaryota n.a. n.a. n.a. PMID[10978211]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. PMID[11830162]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[11858751]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[12510838]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. PMID[12809361]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[1402962]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota n.a. xylem n.a. PMID[14600386]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[15019787]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[15646793]
NPO41760 Saccharomyces cerevisiae INVSc1 [n.a.] Strain Saccharomycetaceae Eukaryota n.a. n.a. n.a. PMID[15769252]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota fruits n.a. n.a. PMID[15787435]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. PMID[18288807]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota Stems; Barks n.a. n.a. PMID[18303853]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota stem bark n.a. n.a. PMID[18303853]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota tubers n.a. n.a. PMID[20594848]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[21657081]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22029392]
NPO24024 Fusarium semitectum Species Nectriaceae Eukaryota n.a. n.a. n.a. PMID[22439674]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[23517479]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[24913558]
NPO26193 Piper methysticum Species Piperaceae Eukaryota root n.a. n.a. PMID[25597012]
NPO18823 Colysis pothifolia Species Polypodiaceae Eukaryota n.a. n.a. n.a. PMID[26731047]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Flower Buds n.a. n.a. PMID[26977531]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[27444348]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. PMID[29878768]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota flowers n.a. n.a. PMID[30413343]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota Roots n.a. n.a. PMID[31464439]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[34770801]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[36985392]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[37685099]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[37836118]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[39684253]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[39699537]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[8904847]
NPO1448 Diospyros lycioides Species Ebenaceae Eukaryota n.a. n.a. n.a. PMID[9644074]
NPO25657 Mezzettia leptopoda Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[9868159]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2466 Aloe microstigma Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7312 Aplidium multiplicatum Species Polyclinidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10176 Chrozophora prostrata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13216 Streptomyces pulveraceus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1448 Diospyros lycioides Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18613 Commiphora erlangeriana Species Burseraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4790 Bocconia cordata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21004 Nicotiana plumbaginifolia Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20871 Pueraria tuberosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24024 Fusarium semitectum Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25881 Stachys plumosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24584 Corydalis bungeana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8144 Labidiaster annulatus Species Labidiasteridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Latex Exudate n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24584 Corydalis bungeana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21004 Nicotiana plumbaginifolia Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20871 Pueraria tuberosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24087 Psacalium peltatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24584 Corydalis bungeana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21004 Nicotiana plumbaginifolia Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20871 Pueraria tuberosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26230 Lappula echinata Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20871 Pueraria tuberosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24584 Corydalis bungeana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18823 Colysis pothifolia Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24024 Fusarium semitectum Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19340 Orobanche caerulescens Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24087 Psacalium peltatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7177 Inocybe rimosa Species Inocybaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7312 Aplidium multiplicatum Species Polyclinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24868 Streptomyces aizunensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3987 Syzygium aromaticum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2466 Aloe microstigma Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25484 Bumelia obtusifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21143 Cryptocarya canelilla Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25624 Teclea sudanica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23296 Teucrium carolipaui Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10176 Chrozophora prostrata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25505 Astilbe japonica Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21004 Nicotiana plumbaginifolia Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13216 Streptomyces pulveraceus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO25657 Mezzettia leptopoda Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO336 Chaetomorpha moniligera Species Cladophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20871 Pueraria tuberosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25619 Vitex divaricata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18421 Tachardia lacca n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20271 Canarina canariensis Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18613 Commiphora erlangeriana Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25881 Stachys plumosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25316 Lasius niger Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21677 Liatris aspera Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26230 Lappula echinata Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21424 Garcinia xanthochymus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1448 Diospyros lycioides Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4790 Bocconia cordata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8315 Wunderlichia crulsiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8144 Labidiaster annulatus Species Labidiasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15221 Crambe fruticosa Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29053 Dictyostelium longosporum Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21230 Heterodermia obscurata Species Physciaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18580 Diabelia spathulata Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24584 Corydalis bungeana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT153 Individual protein Androgen Receptor Homo sapiens Potency n.a. 11985.6 nM PubChem BioAssay data set
NPT153 Individual protein Androgen Receptor Homo sapiens Potency n.a. 18833.6 nM PubChem BioAssay data set
NPT152 Individual protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 819.7 nM PubChem BioAssay data set
NPT106 Individual protein Peroxisome proliferator-activated receptor delta Homo sapiens Potency n.a. 163.6 nM PubChem BioAssay data set
NPT162 Individual protein Heat shock protein beta-1 Homo sapiens Potency n.a. 5172.1 nM PubChem BioAssay data set
NPT106 Individual protein Peroxisome proliferator-activated receptor delta Homo sapiens Potency n.a. 2592.2 nM PubChem BioAssay data set
NPT163 Individual protein Nuclear factor NF-kappa-B p105 subunit Homo sapiens Potency n.a. 927.7 nM PubChem BioAssay data set
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus ID50 = 3.4e-06 M PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Concentration = 0.00005 M PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Inhibition = 20.0 % PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Protection = 75.0 % PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Inhibition = 74.0 % PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Protection = 5.0 % PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Inhibition = 15.0 % PMID[7288825]
NPT2967 Individual protein Alanine aminotransferase Rattus norvegicus Protection = 81.0 % PMID[7288825]
NPT2968 Individual protein Bcl2-antagonist of cell death (BAD) Homo sapiens IC50 = 19000.0 nM PMID[18925736]
NPT163 Individual protein Nuclear factor NF-kappa-B p105 subunit Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT2741 Individual protein Pyruvate kinase Leishmania mexicana Potency = 10000.0 nM PubChem BioAssay data set
NPT2969 Individual protein Regulator of G-protein signaling 12 Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT149 Individual protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 3981.1 nM PubChem BioAssay data set
NPT149 Individual protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT1197 Individual protein Huntingtin Homo sapiens Potency = 6309.6 nM PubChem BioAssay data set
NPT1620 Individual protein Signal transducer and activator of transcription 6 Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT210 Individual protein Thyroid stimulating hormone receptor Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT210 Individual protein Thyroid stimulating hormone receptor Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens Potency = 3162.3 nM PubChem BioAssay data set
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens Potency = 6309.6 nM PubChem BioAssay data set
NPT211 Individual protein Hypoxia-inducible factor 1 alpha Homo sapiens Potency = 7943.3 nM PubChem BioAssay data set
NPT211 Individual protein Hypoxia-inducible factor 1 alpha Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT1119 Individual protein Arachidonate 12-lipoxygenase Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT1119 Individual protein Arachidonate 12-lipoxygenase Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT282 Individual protein MAP kinase ERK2 Homo sapiens Potency = 15848.9 nM PubChem BioAssay data set
NPT282 Individual protein MAP kinase ERK2 Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT150 Individual protein Anthrax lethal factor Bacillus anthracis Potency = 15848.9 nM PubChem BioAssay data set
NPT150 Individual protein Anthrax lethal factor Bacillus anthracis Potency = 10000.0 nM PubChem BioAssay data set
NPT1620 Individual protein Signal transducer and activator of transcription 6 Homo sapiens Potency = 7943.3 nM PubChem BioAssay data set
NPT151 Individual protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 14125.4 nM PubChem BioAssay data set
NPT151 Individual protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 28183.8 nM PubChem BioAssay data set
NPT149 Individual protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 31622.8 nM PubChem BioAssay data set
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens Potency = 3162.3 nM PubChem BioAssay data set
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens Potency = 31622.8 nM PubChem BioAssay data set
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens Potency = 7943.3 nM PubChem BioAssay data set
NPT212 Individual protein Cytochrome P450 2C9 Homo sapiens Potency = 15848.9 nM PubChem BioAssay data set
NPT152 Individual protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 18356.4 nM PubChem BioAssay data set
NPT1005 Individual protein Tumor susceptibility gene 101 protein Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT1623 Individual protein DNA polymerase III Bacillus subtilis (strain 168) Potency n.a. 8436.8 nM PubChem BioAssay data set
NPT135 Individual protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 9466.2 nM PubChem BioAssay data set
NPT1139 Individual protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 3981.1 nM PubChem BioAssay data set
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens AC50 = 31622.78 nM PubChem BioAssay data set
NPT212 Individual protein Cytochrome P450 2C9 Homo sapiens AC50 = 15848.93 nM PubChem BioAssay data set
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens AC50 = 7943.28 nM PubChem BioAssay data set
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens AC50 = 12589.25 nM PubChem BioAssay data set
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens AC50 = 3162.28 nM PubChem BioAssay data set
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens AC50 = 3162.28 nM PubChem BioAssay data set
NPT208 Individual protein Cytochrome P450 1A2 Homo sapiens AC50 = 3981.07 nM PubChem BioAssay data set
NPT208 Individual protein Cytochrome P450 1A2 Homo sapiens AC50 = 10000.0 nM PubChem BioAssay data set
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens AC50 = 6309.57 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 7943.3 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 2818.4 nM PubChem BioAssay data set
NPT154 Individual protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 2511.9 nM PubChem BioAssay data set
NPT100 Individual protein Glutaminase kidney isoform, mitochondrial Homo sapiens Potency n.a. 3162.3 nM PubChem BioAssay data set
NPT242 Individual protein Dopamine D1 receptor Homo sapiens Potency n.a. 4610.9 nM PubChem BioAssay data set
NPT104 Individual protein Cerebroside-sulfatase Homo sapiens Potency n.a. 21331.3 nM PubChem BioAssay data set
NPT2970 Individual protein Fibrinogen beta chain Homo sapiens IC50 > 83135.0 nM PubChem BioAssay data set
NPT2970 Individual protein Fibrinogen beta chain Homo sapiens IC50 = 24165.0 nM PubChem BioAssay data set
NPT204 Individual protein Acetylcholinesterase Homo sapiens IC50 = 1220.0 nM PMID[32454229]
NPT204 Individual protein Acetylcholinesterase Homo sapiens Inhibition = 91.2 % PMID[32454229]
NPT483 Individual protein Prelamin-A/C Homo sapiens Potency = 398.1 nM PubChem BioAssay data set
NPT537 Individual protein Ras-related protein Rab-9A Homo sapiens Potency = 46109.1 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 7079.5 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 6309.6 nM PubChem BioAssay data set
NPT55 Individual protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 6294.6 nM PubChem BioAssay data set
NPT531 Individual protein Nuclear receptor ROR-gamma Mus musculus Potency = 3162.3 nM PubChem BioAssay data set
NPT533 Protein-protein interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT803 Individual protein Flap endonuclease 1 Homo sapiens Potency n.a. 26679.5 nM PubChem BioAssay data set
NPT72 Individual protein Solute carrier organic anion transporter family member 1B3 Homo sapiens Inhibition = 2.9 % PMID[22541068]
NPT4381 Individual protein Cell division protein ftsZ Escherichia coli K-12 IC50 = 3000.0 nM PMID[32066012]
NPT48 Individual protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT48 Individual protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 7079.5 nM PubChem BioAssay data set
NPT484 Individual protein Luciferin 4-monooxygenase Photinus pyralis Potency = 15848.9 nM PubChem BioAssay data set
NPT484 Individual protein Luciferin 4-monooxygenase Photinus pyralis Potency = 12589.3 nM PubChem BioAssay data set
NPT94 Individual protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 22387.2 nM PubChem BioAssay data set
NPT538 Individual protein Niemann-Pick C1 protein Homo sapiens Potency = 145809.7 nM PubChem BioAssay data set
NPT940 Individual protein Serine/threonine-protein kinase mTOR Homo sapiens Potency = 3288.5 nM PubChem BioAssay data set
NPT95 Individual protein Muscarinic acetylcholine receptor M1 Rattus norvegicus Potency = 141.3 nM PubChem BioAssay data set
NPT96 Individual protein Thrombopoietin Homo sapiens Potency = 1000.0 nM PubChem BioAssay data set
NPT95 Individual protein Muscarinic acetylcholine receptor M1 Rattus norvegicus Potency = 12589.3 nM PubChem BioAssay data set
NPT698 Individual protein Regulator of G-protein signaling 4 Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT698 Individual protein Regulator of G-protein signaling 4 Homo sapiens Potency n.a. 2119.2 nM PubChem BioAssay data set
NPT444 Individual protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT7 Individual protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT888 Individual protein 78 kDa glucose-regulated protein Homo sapiens Potency n.a. 7079.5 nM PubChem BioAssay data set
NPT888 Individual protein 78 kDa glucose-regulated protein Homo sapiens Potency n.a. 4140.0 nM PubChem BioAssay data set
NPT484 Individual protein Luciferin 4-monooxygenase Photinus pyralis Potency n.a. 7208.0 nM PubChem BioAssay data set
NPT477 Individual protein DNA dC->dU-editing enzyme APOBEC-3G Homo sapiens Potency n.a. 3548.1 nM PubChem BioAssay data set
NPT73 Individual protein Solute carrier organic anion transporter family member 1B1 Homo sapiens Inhibition = -0.2 % PMID[22541068]
NPT67 Individual protein Cholinesterase Equus caballus Inhibition = 1.3 % PMID[23062825]
NPT983 Protein complex Nuclear factor NF-kappa-B complex Homo sapiens IC50 = 2000.0 nM PMID[24775915]
NPT22517 Single protein Regulator of G-protein signaling 17 Homo sapiens IC50 = 12000.0 nM PMID[28621943]
NPT22517 Single protein Regulator of G-protein signaling 17 Homo sapiens Kd = 1000.0 nM PMID[28621943]
NPT22517 Single protein Regulator of G-protein signaling 17 Homo sapiens IC50 = 72800.0 nM PMID[28621943]
NPT22517 Single protein Regulator of G-protein signaling 17 Homo sapiens IC50 > 100000.0 nM PMID[28621943]
NPT22517 Single protein Regulator of G-protein signaling 17 Homo sapiens Activity = 16234.0 Da PMID[28621943]
NPT93 Individual protein Survival motor neuron protein Homo sapiens Potency = 22387.2 nM PubChem BioAssay data set
NPT93 Individual protein Survival motor neuron protein Homo sapiens Potency = 11220.2 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 17782.8 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 28183.8 nM PubChem BioAssay data set
NPT583 Individual protein Inositol monophosphatase 1 Rattus norvegicus Potency = 10000.0 nM PubChem BioAssay data set
NPT792 Individual protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 3162.3 nM PubChem BioAssay data set
NPT792 Individual protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 7943.3 nM PubChem BioAssay data set
NPT478 Individual protein Ataxin-2 Homo sapiens Potency n.a. 6309.6 nM PubChem BioAssay data set
NPT8 Individual protein DNA polymerase iota Homo sapiens Potency n.a. 17782.8 nM PubChem BioAssay data set
NPT445 Individual protein Peripheral myelin protein 22 Rattus norvegicus Potency n.a. 15836.9 nM PubChem BioAssay data set
NPT445 Individual protein Peripheral myelin protein 22 Rattus norvegicus Potency n.a. 8087.5 nM PubChem BioAssay data set
NPT478 Individual protein Ataxin-2 Homo sapiens Potency n.a. 5623.4 nM PubChem BioAssay data set
NPT478 Individual protein Ataxin-2 Homo sapiens Potency n.a. 1995.3 nM PubChem BioAssay data set
NPT622 Individual protein Solute carrier organic anion transporter family member 2B1 Homo sapiens Inhibition = 15.0 % PMID[22541068]
NPT66 Individual protein Acetylcholinesterase Electrophorus electricus Inhibition = 26.96 % PMID[23062825]
NPT920 Individual protein Alpha-synuclein Homo sapiens Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT920 Individual protein Alpha-synuclein Homo sapiens Potency n.a. 29092.9 nM PubChem BioAssay data set
NPT29454 Single protein Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 Homo sapiens Inhibition = 1.623 % PMID[38318365]
NPT74 Individual protein Proto-oncogene c-JUN Homo sapiens Potency n.a. 1310.5 nM PubChem BioAssay data set
NPT53 Individual protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 8912.5 nM PubChem BioAssay data set
NPT52 Individual protein Pyruvate kinase isozymes M1/M2 Homo sapiens Potency = 10000.0 nM PubChem BioAssay data set
NPT53 Individual protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 10000.0 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 17782.8 nM PubChem BioAssay data set
NPT45 Individual protein Ubiquitin carboxyl-terminal hydrolase 2 Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency = 3162.3 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency = 6309.6 nM PubChem BioAssay data set
NPT539 Individual protein Cellular tumor antigen p53 Homo sapiens Potency = 2511.9 nM PubChem BioAssay data set
NPT64 Individual protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 2908.1 nM PubChem BioAssay data set
NPT443 Individual protein Histone acetyltransferase GCN5 Homo sapiens Potency n.a. 15848.9 nM PubChem BioAssay data set
NPT5 Individual protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 12589.3 nM PubChem BioAssay data set
NPT5 Individual protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 1888.8 nM PubChem BioAssay data set
NPT62 Individual protein 6-phospho-1-fructokinase Trypanosoma brucei Potency n.a. 47.8 nM PubChem BioAssay data set
NPT64 Individual protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 580.2 nM PubChem BioAssay data set
NPT439 Individual protein Butyrylcholinesterase Homo sapiens IC50 = 7080.0 nM PMID[32454229]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT550 Cell line T-24 Homo sapiens Activity = 639.2 U/mg PMID[20980080]
NPT65 Cell line HepG2 Homo sapiens Potency n.a. 2818.4 nM PubChem BioAssay data set
NPT71 Cell line HEK293 Homo sapiens Potency n.a. 1031.8 nM PubChem BioAssay data set
NPT519 Cell line SH-SY5Y Homo sapiens Potency n.a. 3548.1 nM PubChem BioAssay data set
NPT81 Cell line A549 Homo sapiens IC50 = 610.0 nM PMID[28621943]
NPT878 Organism Streptococcus mutans Streptococcus mutans MIC = 15.0 ug.mL-1 PMID[8904847]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 16944.1 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 6745.6 nM PubChem BioAssay data set
NPT28438 Unchecked Unchecked n.a. IC50 = 10000.0 nM PMID[33007663]
NPT1128 Organism Prevotella intermedia Prevotella intermedia MIC = 2.0 ug.mL-1 PMID[8904847]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae Potency = 461.1 nM PubChem BioAssay data set
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. EC50 = 930.0 nM DOI[10.1039/C3MD00149K]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. EC50 = 890.0 nM DOI[10.1039/C3MD00149K]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. EC50 = 1000.0 nM DOI[10.1039/C3MD00149K]
NPT2709 Organism Bacillus subtilis subsp. subtilis str. 168 Bacillus subtilis subsp. subtilis str. 168 MIC = 10000.0 nM PMID[23539337]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 1510.0 nM PMID[27887841]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 92.3 % PMID[27887841]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 530.0 nM PMID[27887841]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 88.5 % PMID[27887841]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 8.0 ug.mL-1 PMID[28633894]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC = 8.0 ug.mL-1 PMID[28633894]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 2.0 ug.mL-1 PMID[34340044]
NPT2642 Organism Bacillus pumilus Bacillus pumilus MIC = 4.0 ug.mL-1 PMID[34340044]
NPT2642 Organism Bacillus pumilus Bacillus pumilus MBC = 32.0 ug ml-1 PMID[34340044]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC = 2.0 ug.mL-1 PMID[34340044]
NPT2642 Organism Bacillus pumilus Bacillus pumilus Ratio = 8.0 n.a. PMID[34340044]
NPT79 Organism Bacillus subtilis Bacillus subtilis MBC > 128.0 ug ml-1 PMID[34340044]
NPT1127 Organism Porphyromonas gingivalis Porphyromonas gingivalis MIC = 15.0 ug.mL-1 PMID[9644074]
NPT1127 Organism Porphyromonas gingivalis Porphyromonas gingivalis MIC = 2.0 ug.mL-1 PMID[8904847]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 34000.0 nM PMID[22182580]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MBC = 34.0 uM PMID[22182580]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC = 8500.0 nM PMID[22182580]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MBC = 34.0 uM PMID[22182580]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus EC50 = 24500.0 nM PMID[22182580]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis EC50 = 4400.0 nM PMID[22182580]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC90 = 16.0 ug.mL-1 PMID[23127490]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC90 = 8.0 ug.mL-1 PMID[23127490]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC90 = 2.0 ug.mL-1 PMID[23127490]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 16.0 ug.mL-1 PMID[23314053]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 8.0 ug.mL-1 PMID[23314053]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 2.0 ug.mL-1 PMID[23314053]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC=>90 = 16.0 ug ml-1 PMID[23481648]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC=>90 = 8.0 ug ml-1 PMID[23481648]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC=>90 = 2.0 ug ml-1 PMID[23481648]
NPT19 Organism Escherichia coli Escherichia coli MIC > 128.0 ug.mL-1 PMID[28633894]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 128.0 ug.mL-1 PMID[28633894]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 8.0 ug.mL-1 PMID[28633894]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 4.0 ug.mL-1 PMID[28633894]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC = 64.0 ug.mL-1 PMID[28633894]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Ratio = 32.0 n.a. PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 8.0 ug.mL-1 PMID[34340044]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MBC > 64.0 ug ml-1 PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 4.0 ug.mL-1 PMID[34340044]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 32.0 ug.mL-1 PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Ratio = 16.0 n.a. PMID[34340044]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC = 8.0 ug.mL-1 PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MBC > 64.0 ug ml-1 PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MBC = 128.0 ug ml-1 PMID[34340044]
NPT19 Organism Escherichia coli Escherichia coli MIC = 32.0 ug.mL-1 PMID[34340044]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 16.0 ug.mL-1 PMID[34340044]
NPT28513 Organism Mycolicibacterium smegmatis Mycolicibacterium smegmatis MIC = 24.5 ug.mL-1 PMID[35168150]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 16.0 ug.mL-1 PMID[34340044]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 64.0 ug.mL-1 PMID[34340044]
NPT2 Others Unspecified n.a. Potency n.a. 1457.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1310.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 10590.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 33491.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2660.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 6740 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 15089 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1835.1 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2984.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 8412.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1635.6 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 26603.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 21313.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 919.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 6682.4 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2614.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 11883.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 9520.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 10682.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2113.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 580.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1496 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1299.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 21131.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 13333.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1168 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1470.4 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 4609 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2076.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1834.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 3661.1 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 6007 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 465 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 14575 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 2933.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1635.3 nM PubChem BioAssay data set
NPT1129 Organism Actinomyces viscosus Actinomyces viscosus MIC = 15.0 ug.mL-1 PMID[8904847]
NPT2 Others Unspecified n.a. Potency = 1995.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency = 2511.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 7307.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Ratio = 4.0 n.a. PMID[22182580]
NPT2 Others Unspecified n.a. Potency n.a. 3219.7 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 > 121805.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 51832.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 14125.4 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 1299.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 8912.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 5011.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 3162.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 25118.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. AC50 n.a. 17782.8 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 575.5 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 970.46 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 525.3 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 378.9 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 316.1 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 264.6 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 537.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 n.a. 40000.0 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 349.8 nM PubChem BioAssay data set
NPT1531 Organism Enterococcus faecium Enterococcus faecium MBC > 64.0 ug ml-1 PMID[34340044]
NPT1531 Organism Enterococcus faecium Enterococcus faecium MIC = 32.0 ug.mL-1 PMID[34340044]
NPT28751 Organism Mycolicibacterium aurum Mycolicibacterium aurum MIC = 24.5 ug.mL-1 PMID[35168150]
NPT1531 Organism Enterococcus faecium Enterococcus faecium MIC = 64.0 ug.mL-1 PMID[34340044]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT938 Organism Cavia porcellus Cavia porcellus Relaxation = -89.0 % PMID[9871602]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC46451 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8627 High Similarity NPC100079
0.8627 High Similarity NPC23614
0.8462 Intermediate Similarity NPC602221
0.6724 Remote Similarity NPC604713
0.6545 Remote Similarity NPC271215
0.65 Remote Similarity NPC604320
0.6429 Remote Similarity NPC149471
0.6271 Remote Similarity NPC611429

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC46451 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD3763 Phase 2

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data