Natural Product: NPC227260

Natural Product IDNPC227260
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
FWCXELAAYFYCSR-RYKNUXCGSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL1770687
PubChem CID 441887
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FWCXELAAYFYCSR-RYKNUXCGSA-N
Standard InCHI InChI=1S/C27H44O4/c1-15-7-10-27(30-14-15)16(2)24-23(31-27)12-20-18-6-5-17-11-21(28)22(29)13-26(17,4)19(18)8-9-25(20,24)3/h15-24,28-29H,5-14H2,1-4H3/t15-,16+,17+,18-,19+,20+,21-,22-,23+,24+,25+,26+,27-/m1/s1
SMILES C[C@@H]1CC[C@@]2(OC1)O[C@@H]1[C@H]([C@@H]2C)[C@@]2([C@@H](C1)[C@@H]1CC[C@@H]3[C@]([C@H]1CC2)(C)C[C@H]([C@@H](C3)O)O)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   432.32 Volume:   459.37
?
Van der Waals volume.
Dense:   0.941 LogP:   5.176
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   4.479
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -5.661
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   0.0 Rigid Bonds:   30.0
TPSA:   58.92
?
Topological Polar Surface Area.
H-Bond Acceptor:   4.0
H-Bond Donor:   2.0 Rings:   6.0
Heavy Atoms:   4.0

MedChem Properties

QED Drug-Likeness Score:   0.579 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   5.384 Fsp3:   1.0
MCE-18:   142.519
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Accepted
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.69 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.081
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.227 Promiscuous compounds:   0.208

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.893 MDCK Permeability:   -4.835
Pgp-inhibitor:   0.135 Pgp-substrate:   0.166
PAMPA:   0.564
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.002
20% Bioavailability (F20%):   0.404 30% Bioavailability (F30%):   0.413
50% Bioavailability (F50%):   0.991

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.583 MRP1:   0.247
Plasma Protein Binding (PPB):   92.696% Volume Distribution (VD):   0.232
Fu: 10.546%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.96
BSEP inhibitor:   0.978

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.007
CYP2C19-inhibitor:   0.012 CYP2C19-substrate:   0.003
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.002
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.504
CYP3A4-inhibitor:   1.0 CYP3A4-substrate:   1.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   1.0
HLM stability:   0.928
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  13.509 Half-life (T1/2):  1.776

ADMET: Toxicity

hERG Blockers:  0.247 hERG Blockers (10um):  0.548
Human Hepatotoxicity (H-HT):  0.554 Drug-induced Liver Injury (DILI):  0.688
AMES Toxicity:  0.328 Rat Oral Acute Toxicity:  0.222
Maximum Recommended Daily Dose:  0.604 Skin Sensitization:  0.989
Carcinogencity:  0.657 Eye Corrosion:  0.024
Eye Irritation:  0.403 Respiratory Toxicity:  0.283
Drug-induced Neurotoxicity:  0.054 Ototoxicity:  0.745
Hematotoxicity:  0.091 Drug-induced Nephrotoxicity:  0.408
Genotoxicity:  0.004 RPMI-8226 Immunitoxicity:  0.096
A549 Cytotoxicity:  0.307 Hek293 Cytotoxicity:  0.78
BCF:   2.609
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.067
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.87
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.663
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. fruit n.a. DOI[10.1007/s11306-014-0728-9]
NPO19920 Yucca gloriosa Species Asparagaceae Eukaryota n.a. stem n.a. DOI[10.1016/0031-9422(89)80212-2]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. n.a. n.a. DOI[10.1038/sdata.2014.29]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. bark n.a. PMID[11045899]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota Fruits n.a. n.a. PMID[11141122]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[11171227]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[11599360]
NPO24670 Casearia lucida Species Salicaceae Eukaryota Barks n.a. n.a. PMID[11858738]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[12576668]
NPO21106 Isatis costata Species Brassicaceae Eukaryota n.a. whole plant n.a. PMID[17846565]
NPO23793 Morus lhou Species Moraceae Eukaryota n.a. bark n.a. PMID[18608767]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. bark n.a. PMID[19555186]
NPO10809 Isaria farinosa Species Cordycipitaceae Eukaryota Cordyceps-colonizing isolate of Isaria farinosa n.a. n.a. PMID[19572613]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[20506817]
NPO10809 Isaria farinosa Species Cordycipitaceae Eukaryota n.a. n.a. n.a. PMID[21158423]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. seed n.a. PMID[21381697]
NPO10809 Isaria farinosa Species Cordycipitaceae Eukaryota n.a. n.a. n.a. PMID[21495659]
NPO19108 Arthrinium sacchari Species Apiosporaceae Eukaryota n.a. n.a. n.a. PMID[21718054]
NPO22631 Actinopolyspora erythraea Species Actinopolysporaceae Bacteria n.a. mycelium n.a. PMID[21870828]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. seed n.a. PMID[25891114]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[26896350]
NPO21735 Clausena anisum-olens Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[28368606]
NPO21635 Pandalus borealis Species Pandalidae Eukaryota n.a. n.a. n.a. PMID[3349210]
NPO24292 Plagiochila porelloides Species Plagiochilaceae Eukaryota n.a. n.a. n.a. PMID[36677674]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[37120447]
NPO8463 Brickellia arguta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[6429283]
NPO22060 Hippomane mancinella Species Euphorbiaceae Eukaryota Latex n.a. n.a. PMID[6481361]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[8987503]
NPO4582 Baphicacanthus cusia Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8075 Cacospongia scalaris Species Thorectidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2263 Croton megistocarpus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO433 Geranium sibiricum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14100 Persea kusanoi Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7639 Senecio isatideus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5203 Ulex minor Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24267 Paeonia veitchii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24764 Amphius huxleyi n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO24670 Casearia lucida Species Salicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17037 Dichapetalum toxicarium Species Dichapetalaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22909 Echinogorgia flora Species Paramuriceidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24579 Rhamnus procumbens Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24961 Teucrium lucidum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23793 Morus lhou Species Moraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20032 Prunus sibirica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21106 Isatis costata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22631 Actinopolyspora erythraea Species Actinopolysporaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO23367 Mylabris cichorii Species Meloidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22938 Genista hystrix Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8463 Brickellia arguta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19380 Styela plicata Species Styelidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22246 Aplidium longithorax Species Polyclinidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22578 Speranskia tuberculata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19547 Juniperus macropoda Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22604 Owenia cepiodora Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20042 Ambrosia cumanensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25227 Senecio roseus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22060 Hippomane mancinella Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20182 Euonymus pendulus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14364 Alisma plantago-aquatica Species Alismataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7217 Plakobranchus ocellatus Species Placobranchidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18197 Cadlina luteomarginata Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20677 Fraxinus angustifolia Species Oleaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23056 Isaria japonica Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19108 Arthrinium sacchari Species Apiosporaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20358 Streptomyces maritimus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24267 Paeonia veitchii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4582 Baphicacanthus cusia Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23793 Morus lhou Species Moraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22326 Daphnopsis racemosa Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20952 Dioscorea cirrhosa Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8338 Macrothelypteris oligophlebia Species Thelypteridaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22060 Hippomane mancinella Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19547 Juniperus macropoda Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO433 Geranium sibiricum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22578 Speranskia tuberculata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19070 Cassia dentata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. fruit n.a. Database[MetaboLights]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO433 Geranium sibiricum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4582 Baphicacanthus cusia Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24267 Paeonia veitchii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23793 Morus lhou Species Moraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22578 Speranskia tuberculata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8338 Macrothelypteris oligophlebia Species Thelypteridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17567 Blechnopsis orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22326 Daphnopsis racemosa Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23367 Mylabris cichorii Species Meloidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22060 Hippomane mancinella Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20952 Dioscorea cirrhosa Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19547 Juniperus macropoda Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5203 Ulex minor Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19070 Cassia dentata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19070 Cassia dentata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24267 Paeonia veitchii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4582 Baphicacanthus cusia Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20032 Prunus sibirica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14100 Persea kusanoi Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9972 Angostura granulosa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27833 Xerotus discolor Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8210 Trigonella foenum-graecum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19380 Styela plicata Species Styelidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21246 Helichrysum anomalum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19693 Lobaria oregana Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8075 Cacospongia scalaris Species Thorectidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23056 Isaria japonica Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23133 Gypsophila patrini Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22187 Ostrea virginica Species Ostreidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22993 Veronica hederifolia Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22938 Genista hystrix Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23094 Pectinophora gossypiella Species Gelechiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22453 Befaria racemosa n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO19108 Arthrinium sacchari Species Apiosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21080 Solanum lycopersicum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22321 Euphorbia lamprocarpa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20358 Streptomyces maritimus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO22119 Echinops bannaticus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4582 Baphicacanthus cusia Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22697 Licaria mahuba Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17898 Buckiella undulata Species Hypnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21106 Isatis costata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14211 Acinetobacter junii Species Moraxellaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5203 Ulex minor Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7639 Senecio isatideus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22631 Actinopolyspora erythraea Species Actinopolysporaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12005 Amomum zambesiacum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10809 Isaria farinosa Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18197 Cadlina luteomarginata Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20182 Euonymus pendulus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO433 Geranium sibiricum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18568 Artemisia aucheri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21735 Clausena anisum-olens Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24764 Amphius huxleyi n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20042 Ambrosia cumanensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2263 Croton megistocarpus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23475 Psoralea acaulis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17819 Ferula transiliensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22578 Speranskia tuberculata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4605 Silene villosa Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23176 Schefflera bodinieri Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19920 Yucca gloriosa Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22881 Cryptotermes brevis Species Termitoidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7217 Plakobranchus ocellatus Species Placobranchidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22909 Echinogorgia flora Species Paramuriceidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20506 Batatas edulis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17092 Viguiera dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19070 Cassia dentata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20677 Fraxinus angustifolia Species Oleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22246 Aplidium longithorax Species Polyclinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20952 Dioscorea cirrhosa Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10574 Machilus thunbergii Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21997 Benzoin trilobum n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20032 Prunus sibirica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21310 Calliandra angustifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21635 Pandalus borealis Species Pandalidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25227 Senecio roseus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15934 Rhododendron ponticum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22060 Hippomane mancinella Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24579 Rhamnus procumbens Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14364 Alisma plantago-aquatica Species Alismataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5927 Cortinarius venetus Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21874 Cercospora melonis Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23069 Marginisporum aberrans Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17567 Blechnopsis orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19547 Juniperus macropoda Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7395 Tribulus terrestris Species Zygophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6757 Thalictrum elegans Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24051 Gymnomitrion concinnatum Species Gymnomitriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2701 Dacrydium bidwillii Species Mytilidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22604 Owenia cepiodora Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23612 Hoehnephytum imbricatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24961 Teucrium lucidum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23793 Morus lhou Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27508 Roldana ehrenbergiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24670 Casearia lucida Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23367 Mylabris cichorii Species Meloidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22326 Daphnopsis racemosa Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23319 Helipterum hyalospermum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24292 Plagiochila porelloides Species Plagiochilaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24267 Paeonia veitchii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO494 Cissampelos glaberrima Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17037 Dichapetalum toxicarium Species Dichapetalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6186 Aconitum pendulum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5936 Hosta montana Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8338 Macrothelypteris oligophlebia Species Thelypteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8463 Brickellia arguta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23742 Garcinia oliveri Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25174 Tychonema bornetii Species Microcoleaceae Bacteria n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT554 Organism Candida glabrata Candida glabrata Inhibition < 25.0 % PMID[21489791]
NPT20 Organism Candida albicans Candida albicans Inhibition < 25.0 % PMID[21489791]
NPT87 Organism Aspergillus fumigatus Aspergillus fumigatus Inhibition < 25.0 % PMID[21489791]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans Inhibition < 25.0 % PMID[21489791]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC227260 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7797 Intermediate Similarity NPC273290
0.7797 Intermediate Similarity NPC232044
0.7627 Intermediate Similarity NPC248944
0.7627 Intermediate Similarity NPC7479
0.7627 Intermediate Similarity NPC257296
0.6406 Remote Similarity NPC296734
0.6349 Remote Similarity NPC24556
0.6119 Remote Similarity NPC305808
0.6119 Remote Similarity NPC481427
0.5857 Remote Similarity NPC161035
0.5857 Remote Similarity NPC170438
0.5714 Remote Similarity NPC473774
0.5714 Remote Similarity NPC481418
0.5714 Remote Similarity NPC481419
0.5714 Remote Similarity NPC481417
0.5641 Remote Similarity NPC24960
0.5634 Remote Similarity NPC235126
0.5634 Remote Similarity NPC242419
0.5556 Remote Similarity NPC177818
0.5488 Remote Similarity NPC294686
0.5357 Remote Similarity NPC222731
0.5325 Remote Similarity NPC144790
0.5325 Remote Similarity NPC149400
0.5325 Remote Similarity NPC88962
0.5316 Remote Similarity NPC481420
0.5316 Remote Similarity NPC481421
0.5256 Remote Similarity NPC277715
0.5211 Remote Similarity NPC187159
0.5181 Remote Similarity NPC297348
0.5181 Remote Similarity NPC325828
0.5181 Remote Similarity NPC249204
0.5181 Remote Similarity NPC48339
0.5181 Remote Similarity NPC177834
0.5181 Remote Similarity NPC141769
0.5181 Remote Similarity NPC477547
0.5176 Remote Similarity NPC473616
0.5119 Remote Similarity NPC234352
0.5059 Remote Similarity NPC477451

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC227260 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7627 Intermediate Similarity NPD6928 Phase 2
0.5385 Remote Similarity NPD7991 Discontinued
0.5181 Remote Similarity NPD8171 Phase 2

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data