Natural Product: NPC72513

Natural Product ID:  NPC72513
Common Name:   (5R)-5-[4-[(1S,5E)-5-[[(2S,3S)-3-Ethyloxiran-2-Yl]Methylidene]-1-Hydroxy-4-Oxocyclopent-2-En-1-Yl]Butyl]Oxolan-2-One
IUPAC Name:   (5R)-5-[4-[(1S,5E)-5-[[(2S,3S)-3-ethyloxiran-2-yl]methylidene]-1-hydroxy-4-oxocyclopent-2-en-1-yl]butyl]oxolan-2-one
Synonyms:  
Molecular Formula:   C18H24O5
Standard InCHIKey:  FKIPWWBKMVLVII-OVUVEQRPSA-N
Standard InCHI:  InChI=1S/C18H24O5/c1-2-15-16(23-15)11-13-14(19)8-10-18(13,21)9-4-3-5-12-6-7-17(20)22-12/h8,10-12,15-16,21H,2-7,9H2,1H3/b13-11-/t12-,15+,16+,18+/m1/s1
Canonical SMILES:  CC[C@@H]1O[C@H]1/C=C1/C(=O)C=C[C@@]1(O)CCCC[C@@H]1CCC(=O)O1
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO23751 Tectona philippinensis Species Lamiaceae Eukaryota PMID[18278870]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT19 Organism Escherichia coli Escherichia coli IZ = 12 mm 27423480
NPT20 Organism Candida albicans Candida albicans IZ = 13 mm 20806907
NPT20 Organism Candida albicans Candida albicans IZ = 13 mm 19388705
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes IZ = 12 mm 19388705
NPT19 Organism Escherichia coli Escherichia coli IZ = 12 mm Open TG-GATES in vivo data: Hematology
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa IZ = 12 mm 21761866
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa IZ = 12 mm 17323993
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes IZ = 12 mm 10.6019/CHEMBL1201861

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC72513 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8864 High Similarity NPC300312
0.8864 High Similarity NPC111114
0.8864 High Similarity NPC261607
0.8824 High Similarity NPC125290
0.8667 High Similarity NPC167219
0.8471 Intermediate Similarity NPC85772
0.8434 Intermediate Similarity NPC267231
0.8434 Intermediate Similarity NPC108816
0.8434 Intermediate Similarity NPC93763
0.8409 Intermediate Similarity NPC160138
0.8391 Intermediate Similarity NPC261380
0.8333 Intermediate Similarity NPC71533
0.8333 Intermediate Similarity NPC106510
0.8298 Intermediate Similarity NPC141191
0.828 Intermediate Similarity NPC230800
0.8256 Intermediate Similarity NPC475690
0.8235 Intermediate Similarity NPC223904
0.8222 Intermediate Similarity NPC268298
0.8191 Intermediate Similarity NPC169205
0.8182 Intermediate Similarity NPC470755
0.8172 Intermediate Similarity NPC304886
0.8161 Intermediate Similarity NPC250315
0.8152 Intermediate Similarity NPC469645
0.8152 Intermediate Similarity NPC125674
0.8152 Intermediate Similarity NPC469692
0.8152 Intermediate Similarity NPC228451
0.8152 Intermediate Similarity NPC475838
0.814 Intermediate Similarity NPC325031
0.814 Intermediate Similarity NPC141810
0.8132 Intermediate Similarity NPC144133
0.8132 Intermediate Similarity NPC179394
0.8132 Intermediate Similarity NPC129419
0.8111 Intermediate Similarity NPC476805
0.8095 Intermediate Similarity NPC320630
0.8095 Intermediate Similarity NPC116177
0.8095 Intermediate Similarity NPC7563
0.809 Intermediate Similarity NPC475461
0.809 Intermediate Similarity NPC261721
0.809 Intermediate Similarity NPC305475
0.8085 Intermediate Similarity NPC185553
0.8068 Intermediate Similarity NPC96259
0.8068 Intermediate Similarity NPC141193
0.8068 Intermediate Similarity NPC158756
0.8065 Intermediate Similarity NPC469632
0.8065 Intermediate Similarity NPC474247
0.8065 Intermediate Similarity NPC121825
0.8046 Intermediate Similarity NPC173609
0.8022 Intermediate Similarity NPC295312
0.8021 Intermediate Similarity NPC288876
0.8 Intermediate Similarity NPC471462
0.8 Intermediate Similarity NPC475703
0.8 Intermediate Similarity NPC471738
0.7979 Intermediate Similarity NPC90121
0.7979 Intermediate Similarity NPC214694
0.7979 Intermediate Similarity NPC193645
0.7979 Intermediate Similarity NPC475659
0.7979 Intermediate Similarity NPC275960
0.7979 Intermediate Similarity NPC48803
0.7978 Intermediate Similarity NPC165162
0.7978 Intermediate Similarity NPC33570
0.7978 Intermediate Similarity NPC215364
0.7978 Intermediate Similarity NPC255307
0.7978 Intermediate Similarity NPC21471
0.7976 Intermediate Similarity NPC123360
0.7955 Intermediate Similarity NPC169575
0.7955 Intermediate Similarity NPC475947
0.7955 Intermediate Similarity NPC318468
0.7955 Intermediate Similarity NPC40746
0.7952 Intermediate Similarity NPC476355
0.7938 Intermediate Similarity NPC474339
0.7938 Intermediate Similarity NPC164598
0.7938 Intermediate Similarity NPC110443
0.7938 Intermediate Similarity NPC46998
0.7938 Intermediate Similarity NPC128733
0.7938 Intermediate Similarity NPC185141
0.7938 Intermediate Similarity NPC133907
0.7935 Intermediate Similarity NPC475855
0.7912 Intermediate Similarity NPC26078
0.7912 Intermediate Similarity NPC475819
0.7912 Intermediate Similarity NPC476803
0.7907 Intermediate Similarity NPC617
0.7907 Intermediate Similarity NPC473980
0.7907 Intermediate Similarity NPC473981
0.7895 Intermediate Similarity NPC279621
0.7895 Intermediate Similarity NPC473859
0.7889 Intermediate Similarity NPC469910
0.7889 Intermediate Similarity NPC315395
0.7889 Intermediate Similarity NPC316426
0.7889 Intermediate Similarity NPC279859
0.7889 Intermediate Similarity NPC38576
0.7889 Intermediate Similarity NPC107787
0.7889 Intermediate Similarity NPC122502
0.7889 Intermediate Similarity NPC469483
0.7879 Intermediate Similarity NPC474741
0.7879 Intermediate Similarity NPC100487
0.7872 Intermediate Similarity NPC477131
0.7872 Intermediate Similarity NPC474035
0.7872 Intermediate Similarity NPC140543
0.7872 Intermediate Similarity NPC81386
0.7872 Intermediate Similarity NPC474338
0.7865 Intermediate Similarity NPC114979
0.7865 Intermediate Similarity NPC191476
0.7865 Intermediate Similarity NPC115786
0.7865 Intermediate Similarity NPC476804
0.7849 Intermediate Similarity NPC74103
0.7849 Intermediate Similarity NPC150978
0.7849 Intermediate Similarity NPC123177
0.7849 Intermediate Similarity NPC20713
0.7849 Intermediate Similarity NPC284185
0.7849 Intermediate Similarity NPC70595
0.7826 Intermediate Similarity NPC83423
0.7826 Intermediate Similarity NPC51358
0.7826 Intermediate Similarity NPC106040
0.7826 Intermediate Similarity NPC115179
0.7816 Intermediate Similarity NPC302426
0.7802 Intermediate Similarity NPC237540
0.7791 Intermediate Similarity NPC475699
0.7791 Intermediate Similarity NPC192006
0.7791 Intermediate Similarity NPC128276
0.7791 Intermediate Similarity NPC471465
0.7791 Intermediate Similarity NPC196653
0.7789 Intermediate Similarity NPC270013
0.7789 Intermediate Similarity NPC14961
0.7778 Intermediate Similarity NPC11804
0.7778 Intermediate Similarity NPC78089
0.7766 Intermediate Similarity NPC475302
0.7766 Intermediate Similarity NPC135776
0.7765 Intermediate Similarity NPC271070
0.7755 Intermediate Similarity NPC474742
0.7753 Intermediate Similarity NPC215294
0.7753 Intermediate Similarity NPC473390
0.7753 Intermediate Similarity NPC161045
0.7753 Intermediate Similarity NPC39588
0.7753 Intermediate Similarity NPC131669
0.7753 Intermediate Similarity NPC16488
0.7742 Intermediate Similarity NPC469368
0.7742 Intermediate Similarity NPC253144
0.7742 Intermediate Similarity NPC77337
0.7742 Intermediate Similarity NPC62815
0.7738 Intermediate Similarity NPC140287
0.7727 Intermediate Similarity NPC281949
0.7727 Intermediate Similarity NPC24417
0.7727 Intermediate Similarity NPC286229
0.7727 Intermediate Similarity NPC471325
0.7727 Intermediate Similarity NPC301477
0.7727 Intermediate Similarity NPC25684
0.7717 Intermediate Similarity NPC469653
0.7717 Intermediate Similarity NPC471047
0.7717 Intermediate Similarity NPC469628
0.7717 Intermediate Similarity NPC473658
0.7717 Intermediate Similarity NPC475902
0.7717 Intermediate Similarity NPC469631
0.7717 Intermediate Similarity NPC475906
0.7711 Intermediate Similarity NPC163003
0.7708 Intermediate Similarity NPC473291
0.7708 Intermediate Similarity NPC476315
0.7701 Intermediate Similarity NPC264227
0.7701 Intermediate Similarity NPC472965
0.7701 Intermediate Similarity NPC470239
0.7701 Intermediate Similarity NPC19841
0.7701 Intermediate Similarity NPC470244
0.7701 Intermediate Similarity NPC63649
0.7701 Intermediate Similarity NPC270126
0.7701 Intermediate Similarity NPC178277
0.77 Intermediate Similarity NPC203659
0.7692 Intermediate Similarity NPC50637
0.7692 Intermediate Similarity NPC150755
0.7692 Intermediate Similarity NPC284902
0.7692 Intermediate Similarity NPC234038
0.7684 Intermediate Similarity NPC470010
0.7684 Intermediate Similarity NPC262133
0.7684 Intermediate Similarity NPC53685
0.7684 Intermediate Similarity NPC323008
0.7684 Intermediate Similarity NPC476267
0.7684 Intermediate Similarity NPC198853
0.7684 Intermediate Similarity NPC470013
0.7684 Intermediate Similarity NPC57405
0.7684 Intermediate Similarity NPC303942
0.7677 Intermediate Similarity NPC149371
0.7674 Intermediate Similarity NPC470240
0.7674 Intermediate Similarity NPC187568
0.7674 Intermediate Similarity NPC57744
0.7674 Intermediate Similarity NPC65603
0.7674 Intermediate Similarity NPC476794
0.7674 Intermediate Similarity NPC41780
0.766 Intermediate Similarity NPC476705
0.766 Intermediate Similarity NPC133698
0.7647 Intermediate Similarity NPC226669
0.7647 Intermediate Similarity NPC193351
0.7647 Intermediate Similarity NPC138408
0.7647 Intermediate Similarity NPC155587
0.764 Intermediate Similarity NPC26624
0.764 Intermediate Similarity NPC229825
0.764 Intermediate Similarity NPC474252
0.7634 Intermediate Similarity NPC32922
0.7634 Intermediate Similarity NPC14901
0.7634 Intermediate Similarity NPC166919
0.7634 Intermediate Similarity NPC78008
0.7634 Intermediate Similarity NPC130359
0.7634 Intermediate Similarity NPC205548

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC72513 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7979 Intermediate Similarity NPD1698 Clinical (unspecified phase)
0.7935 Intermediate Similarity NPD5785 Approved
0.7778 Intermediate Similarity NPD5363 Approved
0.7444 Intermediate Similarity NPD5209 Approved
0.7444 Intermediate Similarity NPD4269 Approved
0.7444 Intermediate Similarity NPD4270 Approved
0.7379 Intermediate Similarity NPD7899 Clinical (unspecified phase)
0.7363 Intermediate Similarity NPD7154 Phase 3
0.7363 Intermediate Similarity NPD5362 Discontinued
0.7333 Intermediate Similarity NPD5369 Approved
0.7333 Intermediate Similarity NPD6371 Approved
0.7312 Intermediate Similarity NPD5786 Approved
0.7263 Intermediate Similarity NPD1695 Approved
0.7222 Intermediate Similarity NPD4252 Approved
0.7204 Intermediate Similarity NPD1733 Clinical (unspecified phase)
0.7204 Intermediate Similarity NPD1694 Approved
0.7195 Intermediate Similarity NPD2685 Clinical (unspecified phase)
0.7188 Intermediate Similarity NPD6698 Approved
0.7188 Intermediate Similarity NPD46 Approved
0.7143 Intermediate Similarity NPD5282 Discontinued
0.7091 Intermediate Similarity NPD7115 Discovery
0.703 Intermediate Similarity NPD4225 Approved
0.6837 Remote Similarity NPD7838 Discovery
0.6813 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6768 Remote Similarity NPD7983 Approved
0.6735 Remote Similarity NPD5370 Suspended
0.6703 Remote Similarity NPD4756 Discovery
0.6702 Remote Similarity NPD4752 Clinical (unspecified phase)
0.67 Remote Similarity NPD5778 Approved
0.67 Remote Similarity NPD5779 Approved
0.6699 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4821 Approved
0.6667 Remote Similarity NPD6082 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4819 Approved
0.6667 Remote Similarity NPD4820 Approved
0.6667 Remote Similarity NPD5790 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4822 Approved
0.6632 Remote Similarity NPD5332 Approved
0.6632 Remote Similarity NPD5331 Approved
0.66 Remote Similarity NPD4810 Clinical (unspecified phase)
0.6598 Remote Similarity NPD4249 Approved
0.6596 Remote Similarity NPD4790 Discontinued
0.6531 Remote Similarity NPD4250 Approved
0.6531 Remote Similarity NPD4251 Approved
0.6526 Remote Similarity NPD6435 Approved
0.6505 Remote Similarity NPD7839 Suspended
0.6484 Remote Similarity NPD8039 Approved
0.6452 Remote Similarity NPD4268 Approved
0.6452 Remote Similarity NPD4271 Approved
0.6415 Remote Similarity NPD5344 Discontinued
0.64 Remote Similarity NPD6101 Approved
0.64 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6392 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6354 Remote Similarity NPD4800 Clinical (unspecified phase)
0.6339 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6327 Remote Similarity NPD1696 Phase 3
0.6322 Remote Similarity NPD7331 Phase 2
0.6321 Remote Similarity NPD6648 Approved
0.6316 Remote Similarity NPD5368 Approved
0.6303 Remote Similarity NPD7642 Approved
0.6275 Remote Similarity NPD7637 Suspended
0.6275 Remote Similarity NPD6411 Approved
0.6214 Remote Similarity NPD6399 Phase 3
0.6182 Remote Similarity NPD6008 Approved
0.6168 Remote Similarity NPD7639 Approved
0.6168 Remote Similarity NPD7640 Approved
0.6163 Remote Similarity NPD2664 Clinical (unspecified phase)
0.6147 Remote Similarity NPD6647 Phase 2
0.614 Remote Similarity NPD6053 Discontinued
0.6134 Remote Similarity NPD8517 Approved
0.6134 Remote Similarity NPD8515 Approved
0.6134 Remote Similarity NPD8516 Approved
0.6134 Remote Similarity NPD8513 Phase 3
0.6106 Remote Similarity NPD5955 Clinical (unspecified phase)
0.61 Remote Similarity NPD3574 Clinical (unspecified phase)
0.61 Remote Similarity NPD4519 Discontinued
0.61 Remote Similarity NPD4623 Approved
0.6095 Remote Similarity NPD5695 Phase 3
0.6095 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6075 Remote Similarity NPD5696 Approved
0.6075 Remote Similarity NPD7638 Approved
0.6071 Remote Similarity NPD6686 Approved
0.6023 Remote Similarity NPD7341 Phase 2
0.6019 Remote Similarity NPD5207 Approved
0.6018 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6 Remote Similarity NPD7748 Approved
0.5982 Remote Similarity NPD5697 Approved
0.5981 Remote Similarity NPD7902 Approved
0.5981 Remote Similarity NPD6083 Phase 2
0.5981 Remote Similarity NPD6084 Phase 2
0.598 Remote Similarity NPD6903 Approved
0.5962 Remote Similarity NPD5693 Phase 1
0.5962 Remote Similarity NPD5284 Approved
0.5962 Remote Similarity NPD5281 Approved
0.5955 Remote Similarity NPD3704 Approved
0.5941 Remote Similarity NPD7334 Approved
0.5941 Remote Similarity NPD5330 Approved
0.5941 Remote Similarity NPD6684 Approved
0.5941 Remote Similarity NPD7521 Approved
0.5941 Remote Similarity NPD7146 Approved
0.5941 Remote Similarity NPD6409 Approved
0.5932 Remote Similarity NPD7500 Approved
0.593 Remote Similarity NPD4246 Clinical (unspecified phase)
0.5929 Remote Similarity NPD6881 Approved
0.5929 Remote Similarity NPD6899 Approved
0.5929 Remote Similarity NPD6011 Approved
0.5913 Remote Similarity NPD6649 Approved
0.5913 Remote Similarity NPD6650 Approved
0.5913 Remote Similarity NPD7116 Clinical (unspecified phase)
0.5913 Remote Similarity NPD2181 Clinical (unspecified phase)
0.5909 Remote Similarity NPD3197 Phase 1
0.5902 Remote Similarity NPD7830 Approved
0.5902 Remote Similarity NPD7829 Approved
0.5889 Remote Similarity NPD4247 Clinical (unspecified phase)
0.5887 Remote Similarity NPD8074 Phase 3
0.5877 Remote Similarity NPD6413 Approved
0.5877 Remote Similarity NPD6014 Approved
0.5877 Remote Similarity NPD6013 Approved
0.5877 Remote Similarity NPD6012 Approved
0.5854 Remote Similarity NPD3172 Approved
0.5849 Remote Similarity NPD6001 Approved
0.5841 Remote Similarity NPD5954 Clinical (unspecified phase)
0.5826 Remote Similarity NPD7102 Approved
0.5826 Remote Similarity NPD2067 Discontinued
0.5826 Remote Similarity NPD6883 Approved
0.5826 Remote Similarity NPD7290 Approved
0.5825 Remote Similarity NPD7513 Clinical (unspecified phase)
0.5825 Remote Similarity NPD5737 Approved
0.5825 Remote Similarity NPD6672 Approved
0.5816 Remote Similarity NPD8259 Clinical (unspecified phase)
0.5816 Remote Similarity NPD4695 Discontinued
0.581 Remote Similarity NPD7515 Phase 2
0.5806 Remote Similarity NPD8273 Phase 1
0.5794 Remote Similarity NPD4629 Approved
0.5794 Remote Similarity NPD5210 Approved
0.5789 Remote Similarity NPD7320 Approved
0.5784 Remote Similarity NPD3618 Phase 1
0.5784 Remote Similarity NPD6422 Discontinued
0.5783 Remote Similarity NPD3195 Phase 2
0.5783 Remote Similarity NPD4266 Approved
0.5783 Remote Similarity NPD3196 Approved
0.5783 Remote Similarity NPD3194 Approved
0.5778 Remote Similarity NPD6108 Clinical (unspecified phase)
0.5776 Remote Similarity NPD6847 Approved
0.5776 Remote Similarity NPD6869 Approved
0.5776 Remote Similarity NPD6617 Approved
0.5776 Remote Similarity NPD8130 Phase 1
0.5773 Remote Similarity NPD3732 Approved
0.5766 Remote Similarity NPD5211 Phase 2
0.5766 Remote Similarity NPD7632 Discontinued
0.5752 Remote Similarity NPD5739 Approved
0.5752 Remote Similarity NPD6402 Approved
0.5752 Remote Similarity NPD7128 Approved
0.5752 Remote Similarity NPD6675 Approved
0.5743 Remote Similarity NPD3666 Approved
0.5743 Remote Similarity NPD3665 Phase 1
0.5743 Remote Similarity NPD3133 Approved
0.5739 Remote Similarity NPD6372 Approved
0.5739 Remote Similarity NPD6373 Approved
0.5738 Remote Similarity NPD6291 Clinical (unspecified phase)
0.5728 Remote Similarity NPD3573 Approved
0.5726 Remote Similarity NPD8297 Approved
0.5726 Remote Similarity NPD7492 Approved
0.5726 Remote Similarity NPD6882 Approved
0.5702 Remote Similarity NPD5701 Approved
0.5701 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5701 Remote Similarity NPD7900 Approved
0.57 Remote Similarity NPD3667 Approved
0.568 Remote Similarity NPD6616 Approved
0.5664 Remote Similarity NPD5141 Approved
0.566 Remote Similarity NPD5694 Approved
0.566 Remote Similarity NPD6079 Approved
0.5656 Remote Similarity NPD6319 Approved
0.5656 Remote Similarity NPD6054 Approved
0.5652 Remote Similarity NPD5345 Clinical (unspecified phase)
0.5644 Remote Similarity NPD6110 Phase 1
0.5641 Remote Similarity NPD2204 Approved
0.5641 Remote Similarity NPD7601 Clinical (unspecified phase)
0.5635 Remote Similarity NPD7078 Approved
0.5631 Remote Similarity NPD5279 Phase 3
0.5631 Remote Similarity NPD5690 Phase 2
0.5619 Remote Similarity NPD6904 Approved
0.5619 Remote Similarity NPD6080 Approved
0.5619 Remote Similarity NPD6673 Approved
0.5619 Remote Similarity NPD7285 Clinical (unspecified phase)
0.5619 Remote Similarity NPD4753 Phase 2
0.561 Remote Similarity NPD6016 Approved
0.561 Remote Similarity NPD6015 Approved
0.5607 Remote Similarity NPD5781 Clinical (unspecified phase)
0.5606 Remote Similarity NPD7966 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   24861911
ChEMBL   CHEMBL443941
ZINC  

Physicochemical Properties

Molecular Weight:  320.16
ALogP:  -1.8704
MLogP:  2.89
XLogP:  1.585
# Rotatable Bonds:  9
Polar Surface Area:  76.13
# H-Bond Aceptor:  5
# H-Bond Donor:  1
# Rings:  3
# Heavy Atoms:  23

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs