Natural Product: NPC19841

Natural Product ID:  NPC19841
Common Name:   Protolichesterinic Acid
IUPAC Name:   (2S,3R)-4-methylidene-5-oxo-2-tridecyloxolane-3-carboxylic acid
Synonyms:   (+)-Protolichesterinic Acid; Protolichesterinic Acid
Molecular Formula:   C19H32O4
Standard InCHIKey:  WZYZDHVPSZCEEP-DLBZAZTESA-N
Standard InCHI:  InChI=1S/C19H32O4/c1-3-4-5-6-7-8-9-10-11-12-13-14-16-17(18(20)21)15(2)19(22)23-16/h16-17H,2-14H2,1H3,(H,20,21)/t16-,17+/m0/s1
Canonical SMILES:  CCCCCCCCCCCCC[C@@H]1OC(=O)C(=C)[C@H]1C(=O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO3729 Cetraria islandica Species Parmeliaceae Eukaryota PMID[7561895]
NPO6513 Vernonia condensata Species Asteraceae Eukaryota UNPD*
NPO4633 Calypogeia integristipula Species Calypogeiaceae Eukaryota UNPD*
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota UNPD*
NPO3729 Cetraria islandica Species Parmeliaceae Eukaryota UNPD*
NPO5786 Desmodium oxyphyllum Species Fabaceae Eukaryota UNPD*
NPO25424 Putterlickia verrucosa Species Celastraceae Eukaryota UNPD*
NPO2777 Cirsium brevistylum Species Asteraceae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 24300 nM 7561895
NPT2 Others Unspecified IC50 = 29600 nM 7561895
NPT2 Others Unspecified IC50 = 21900 nM 7561895
NPT59 Individual Protein DNA polymerase beta Homo sapiens IC50 = 7400 nM 7561895
NPT2 Others Unspecified IC50 = 92800 nM 7561895
NPT91 Cell Line KB Homo sapiens ED50 > 20 ug/ml 7561895
NPT1034 Cell Line Lu1 Homo sapiens ED50 > 20 ug/ml 7561895
NPT858 Cell Line LNCaP Homo sapiens ED50 > 20 ug/ml 7561895
NPT133 Cell Line ZR-75-1 Homo sapiens ED50 > 20 ug/ml 7561895
NPT1514 Uncleic Acid DNA Bos taurus Inhibition = 1.3 % 7561895
NPT2 Others Unspecified Inhibition = 99 % 7561895
NPT2 Others Unspecified Inhibition = 52 % 7561895
NPT2 Others Unspecified Inhibition = 19 % 7561895
NPT2 Others Unspecified Ki = 10000 nM 7561895
NPT2 Others Unspecified Ki = 7100 nM 7561895
NPT1195 Cell Line PMNL IC50 = 9000 nM 10395494
NPT2 Others Unspecified IC50 > 200000 nM 10395494
NPT2 Others Unspecified Activity = 0.08 nmol 10395494
NPT1 Others Radical scavenging activity Activity < 1 /M/s 10395494
NPT941 Cell Line HaCaT Homo sapiens IC50 > 5000 nM 10395495
NPT2 Others Unspecified IC50 = 8600 nM 25027935

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC19841 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9315 High Similarity NPC48641
0.8434 Intermediate Similarity NPC469483
0.8415 Intermediate Similarity NPC158756
0.8313 Intermediate Similarity NPC470755
0.8313 Intermediate Similarity NPC255307
0.8256 Intermediate Similarity NPC19087
0.8235 Intermediate Similarity NPC476803
0.8235 Intermediate Similarity NPC476805
0.8228 Intermediate Similarity NPC97516
0.8228 Intermediate Similarity NPC122847
0.8214 Intermediate Similarity NPC162071
0.8214 Intermediate Similarity NPC475461
0.8214 Intermediate Similarity NPC469910
0.8214 Intermediate Similarity NPC305475
0.8214 Intermediate Similarity NPC150755
0.8193 Intermediate Similarity NPC96259
0.8193 Intermediate Similarity NPC476804
0.8193 Intermediate Similarity NPC114979
0.8193 Intermediate Similarity NPC141193
0.8193 Intermediate Similarity NPC191476
0.8161 Intermediate Similarity NPC184063
0.814 Intermediate Similarity NPC38392
0.814 Intermediate Similarity NPC12872
0.814 Intermediate Similarity NPC168679
0.8125 Intermediate Similarity NPC108816
0.8125 Intermediate Similarity NPC93763
0.8118 Intermediate Similarity NPC201658
0.8095 Intermediate Similarity NPC165162
0.809 Intermediate Similarity NPC475900
0.8077 Intermediate Similarity NPC140287
0.8072 Intermediate Similarity NPC169575
0.8072 Intermediate Similarity NPC131669
0.8072 Intermediate Similarity NPC473390
0.8072 Intermediate Similarity NPC475947
0.8072 Intermediate Similarity NPC40746
0.8068 Intermediate Similarity NPC469645
0.8068 Intermediate Similarity NPC469692
0.8068 Intermediate Similarity NPC475302
0.8049 Intermediate Similarity NPC25684
0.8049 Intermediate Similarity NPC24417
0.8049 Intermediate Similarity NPC301477
0.8049 Intermediate Similarity NPC141810
0.8049 Intermediate Similarity NPC471325
0.8049 Intermediate Similarity NPC281949
0.8025 Intermediate Similarity NPC470244
0.8025 Intermediate Similarity NPC167881
0.8025 Intermediate Similarity NPC617
0.8025 Intermediate Similarity NPC470239
0.8025 Intermediate Similarity NPC98557
0.8023 Intermediate Similarity NPC177629
0.8023 Intermediate Similarity NPC217983
0.8023 Intermediate Similarity NPC58219
0.8023 Intermediate Similarity NPC477302
0.8023 Intermediate Similarity NPC475819
0.8023 Intermediate Similarity NPC207114
0.8 Intermediate Similarity NPC470240
0.8 Intermediate Similarity NPC116177
0.8 Intermediate Similarity NPC261721
0.8 Intermediate Similarity NPC171204
0.8 Intermediate Similarity NPC304558
0.8 Intermediate Similarity NPC39859
0.8 Intermediate Similarity NPC238593
0.8 Intermediate Similarity NPC476028
0.8 Intermediate Similarity NPC141789
0.8 Intermediate Similarity NPC158416
0.8 Intermediate Similarity NPC470883
0.8 Intermediate Similarity NPC236692
0.8 Intermediate Similarity NPC320630
0.8 Intermediate Similarity NPC476794
0.8 Intermediate Similarity NPC7563
0.8 Intermediate Similarity NPC76862
0.8 Intermediate Similarity NPC309757
0.7978 Intermediate Similarity NPC121825
0.7955 Intermediate Similarity NPC184463
0.7952 Intermediate Similarity NPC229825
0.7952 Intermediate Similarity NPC89555
0.7931 Intermediate Similarity NPC92974
0.7931 Intermediate Similarity NPC218927
0.7931 Intermediate Similarity NPC206001
0.7931 Intermediate Similarity NPC307411
0.7927 Intermediate Similarity NPC223904
0.7907 Intermediate Similarity NPC186148
0.7901 Intermediate Similarity NPC267231
0.7889 Intermediate Similarity NPC475659
0.7882 Intermediate Similarity NPC149725
0.7882 Intermediate Similarity NPC47958
0.7882 Intermediate Similarity NPC304509
0.7865 Intermediate Similarity NPC473273
0.7865 Intermediate Similarity NPC473263
0.7865 Intermediate Similarity NPC476300
0.7865 Intermediate Similarity NPC308656
0.7865 Intermediate Similarity NPC60386
0.7865 Intermediate Similarity NPC473234
0.7857 Intermediate Similarity NPC245665
0.7857 Intermediate Similarity NPC59097
0.7857 Intermediate Similarity NPC128429
0.7857 Intermediate Similarity NPC318468
0.7848 Intermediate Similarity NPC476355
0.7841 Intermediate Similarity NPC474232
0.7841 Intermediate Similarity NPC206614
0.7841 Intermediate Similarity NPC51004
0.7841 Intermediate Similarity NPC297474
0.7841 Intermediate Similarity NPC54065
0.7841 Intermediate Similarity NPC469368
0.7841 Intermediate Similarity NPC474323
0.7838 Intermediate Similarity NPC53642
0.7838 Intermediate Similarity NPC470325
0.7831 Intermediate Similarity NPC52861
0.7821 Intermediate Similarity NPC163003
0.7821 Intermediate Similarity NPC474590
0.7816 Intermediate Similarity NPC202672
0.7816 Intermediate Similarity NPC136879
0.7816 Intermediate Similarity NPC79549
0.7805 Intermediate Similarity NPC270126
0.7805 Intermediate Similarity NPC178277
0.7802 Intermediate Similarity NPC142529
0.7802 Intermediate Similarity NPC476009
0.7802 Intermediate Similarity NPC473859
0.7802 Intermediate Similarity NPC230800
0.7802 Intermediate Similarity NPC91771
0.7791 Intermediate Similarity NPC187661
0.7791 Intermediate Similarity NPC474949
0.7791 Intermediate Similarity NPC475019
0.7791 Intermediate Similarity NPC476015
0.7791 Intermediate Similarity NPC474762
0.7791 Intermediate Similarity NPC470242
0.7778 Intermediate Similarity NPC474760
0.7765 Intermediate Similarity NPC474780
0.7765 Intermediate Similarity NPC156485
0.7765 Intermediate Similarity NPC115786
0.7765 Intermediate Similarity NPC159635
0.7753 Intermediate Similarity NPC261607
0.7753 Intermediate Similarity NPC29821
0.7753 Intermediate Similarity NPC300312
0.7753 Intermediate Similarity NPC63193
0.7753 Intermediate Similarity NPC293001
0.7753 Intermediate Similarity NPC57304
0.7753 Intermediate Similarity NPC111114
0.7753 Intermediate Similarity NPC171360
0.7753 Intermediate Similarity NPC133888
0.7753 Intermediate Similarity NPC35959
0.7753 Intermediate Similarity NPC30515
0.7753 Intermediate Similarity NPC133698
0.775 Intermediate Similarity NPC155587
0.775 Intermediate Similarity NPC193351
0.775 Intermediate Similarity NPC226669
0.775 Intermediate Similarity NPC138408
0.7738 Intermediate Similarity NPC246076
0.7727 Intermediate Similarity NPC155935
0.7727 Intermediate Similarity NPC215556
0.7717 Intermediate Similarity NPC474313
0.7717 Intermediate Similarity NPC169205
0.7711 Intermediate Similarity NPC6823
0.7711 Intermediate Similarity NPC281132
0.7701 Intermediate Similarity NPC190753
0.7701 Intermediate Similarity NPC72513
0.7701 Intermediate Similarity NPC5130
0.7701 Intermediate Similarity NPC118601
0.7692 Intermediate Similarity NPC90121
0.7692 Intermediate Similarity NPC193645
0.7692 Intermediate Similarity NPC275960
0.7692 Intermediate Similarity NPC36954
0.7692 Intermediate Similarity NPC48803
0.7683 Intermediate Similarity NPC471465
0.7683 Intermediate Similarity NPC218817
0.7683 Intermediate Similarity NPC11796
0.7683 Intermediate Similarity NPC128276
0.7683 Intermediate Similarity NPC196653
0.7674 Intermediate Similarity NPC329749
0.7674 Intermediate Similarity NPC125290
0.7667 Intermediate Similarity NPC475838
0.7667 Intermediate Similarity NPC153590
0.7667 Intermediate Similarity NPC125674
0.7667 Intermediate Similarity NPC475912
0.7667 Intermediate Similarity NPC228451
0.7667 Intermediate Similarity NPC212486
0.766 Intermediate Similarity NPC110443
0.766 Intermediate Similarity NPC185141
0.766 Intermediate Similarity NPC128733
0.766 Intermediate Similarity NPC46998
0.766 Intermediate Similarity NPC133907
0.7654 Intermediate Similarity NPC235906
0.7654 Intermediate Similarity NPC123360
0.7647 Intermediate Similarity NPC54468
0.7647 Intermediate Similarity NPC250315
0.764 Intermediate Similarity NPC129419
0.764 Intermediate Similarity NPC71533
0.764 Intermediate Similarity NPC216284
0.764 Intermediate Similarity NPC475855
0.764 Intermediate Similarity NPC179394
0.764 Intermediate Similarity NPC144133
0.764 Intermediate Similarity NPC106510
0.764 Intermediate Similarity NPC35809
0.7634 Intermediate Similarity NPC141191
0.7625 Intermediate Similarity NPC320537
0.7625 Intermediate Similarity NPC143979
0.7619 Intermediate Similarity NPC79277
0.7619 Intermediate Similarity NPC475481
0.7614 Intermediate Similarity NPC178875
0.7609 Intermediate Similarity NPC185553

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC19841 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7692 Intermediate Similarity NPD1698 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD5785 Approved
0.7273 Intermediate Similarity NPD7899 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5363 Approved
0.7253 Intermediate Similarity NPD6698 Approved
0.7253 Intermediate Similarity NPD46 Approved
0.7241 Intermediate Similarity NPD7154 Phase 3
0.7209 Intermediate Similarity NPD5369 Approved
0.7191 Intermediate Similarity NPD5786 Approved
0.7126 Intermediate Similarity NPD4269 Approved
0.7126 Intermediate Similarity NPD4270 Approved
0.7079 Intermediate Similarity NPD1733 Clinical (unspecified phase)
0.6989 Remote Similarity NPD7983 Approved
0.6957 Remote Similarity NPD1695 Approved
0.6932 Remote Similarity NPD6435 Approved
0.6907 Remote Similarity NPD4225 Approved
0.6897 Remote Similarity NPD4252 Approved
0.6897 Remote Similarity NPD5790 Clinical (unspecified phase)
0.6893 Remote Similarity NPD6371 Approved
0.6889 Remote Similarity NPD6082 Clinical (unspecified phase)
0.6854 Remote Similarity NPD5362 Discontinued
0.6774 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6774 Remote Similarity NPD6101 Approved
0.6737 Remote Similarity NPD5778 Approved
0.6737 Remote Similarity NPD5779 Approved
0.6737 Remote Similarity NPD6399 Phase 3
0.6705 Remote Similarity NPD4820 Approved
0.6705 Remote Similarity NPD4821 Approved
0.6705 Remote Similarity NPD5368 Approved
0.6705 Remote Similarity NPD4822 Approved
0.6705 Remote Similarity NPD4819 Approved
0.6702 Remote Similarity NPD7838 Discovery
0.6667 Remote Similarity NPD5282 Discontinued
0.6667 Remote Similarity NPD4271 Approved
0.6667 Remote Similarity NPD4268 Approved
0.6632 Remote Similarity NPD8035 Phase 2
0.6632 Remote Similarity NPD8034 Phase 2
0.6632 Remote Similarity NPD6411 Approved
0.6566 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6559 Remote Similarity NPD4250 Approved
0.6559 Remote Similarity NPD4251 Approved
0.6556 Remote Similarity NPD5209 Approved
0.6556 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6531 Remote Similarity NPD7839 Suspended
0.6522 Remote Similarity NPD1694 Approved
0.6477 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6452 Remote Similarity NPD4249 Approved
0.6421 Remote Similarity NPD5370 Suspended
0.6381 Remote Similarity NPD6686 Approved
0.6364 Remote Similarity NPD7115 Discovery
0.6355 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6322 Remote Similarity NPD8039 Approved
0.6304 Remote Similarity NPD5332 Approved
0.6304 Remote Similarity NPD5331 Approved
0.63 Remote Similarity NPD7902 Approved
0.6289 Remote Similarity NPD4810 Clinical (unspecified phase)
0.6289 Remote Similarity NPD7637 Suspended
0.6264 Remote Similarity NPD4790 Discontinued
0.6237 Remote Similarity NPD6400 Clinical (unspecified phase)
0.622 Remote Similarity NPD9496 Clinical (unspecified phase)
0.622 Remote Similarity NPD2685 Clinical (unspecified phase)
0.6203 Remote Similarity NPD3198 Approved
0.619 Remote Similarity NPD229 Approved
0.6184 Remote Similarity NPD3729 Clinical (unspecified phase)
0.6147 Remote Similarity NPD6053 Discontinued
0.614 Remote Similarity NPD8516 Approved
0.614 Remote Similarity NPD8515 Approved
0.614 Remote Similarity NPD8517 Approved
0.614 Remote Similarity NPD8513 Phase 3
0.6111 Remote Similarity NPD4238 Approved
0.6111 Remote Similarity NPD4802 Phase 2
0.6105 Remote Similarity NPD6422 Discontinued
0.6078 Remote Similarity NPD7638 Approved
0.6075 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6055 Remote Similarity NPD6649 Approved
0.6055 Remote Similarity NPD6650 Approved
0.6022 Remote Similarity NPD4800 Clinical (unspecified phase)
0.6019 Remote Similarity NPD7639 Approved
0.6019 Remote Similarity NPD6373 Approved
0.6019 Remote Similarity NPD7640 Approved
0.6019 Remote Similarity NPD6372 Approved
0.6 Remote Similarity NPD7900 Approved
0.6 Remote Similarity NPD4756 Discovery
0.6 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6 Remote Similarity NPD7748 Approved
0.598 Remote Similarity NPD6083 Phase 2
0.598 Remote Similarity NPD6084 Phase 2
0.5974 Remote Similarity NPD3730 Approved
0.5974 Remote Similarity NPD3728 Approved
0.5963 Remote Similarity NPD5955 Clinical (unspecified phase)
0.5962 Remote Similarity NPD5344 Discontinued
0.5952 Remote Similarity NPD7331 Phase 2
0.5941 Remote Similarity NPD5695 Phase 3
0.5938 Remote Similarity NPD7146 Approved
0.5938 Remote Similarity NPD7521 Approved
0.5938 Remote Similarity NPD6409 Approved
0.5938 Remote Similarity NPD6684 Approved
0.5938 Remote Similarity NPD5330 Approved
0.5938 Remote Similarity NPD7334 Approved
0.5934 Remote Similarity NPD3732 Approved
0.5926 Remote Similarity NPD6881 Approved
0.5926 Remote Similarity NPD6899 Approved
0.5922 Remote Similarity NPD5696 Approved
0.5904 Remote Similarity NPD3197 Phase 1
0.5904 Remote Similarity NPD7909 Approved
0.5888 Remote Similarity NPD5739 Approved
0.5888 Remote Similarity NPD7128 Approved
0.5888 Remote Similarity NPD6675 Approved
0.5888 Remote Similarity NPD6402 Approved
0.5882 Remote Similarity NPD8074 Phase 3
0.5865 Remote Similarity NPD6648 Approved
0.5862 Remote Similarity NPD8269 Approved
0.5862 Remote Similarity NPD8267 Approved
0.5862 Remote Similarity NPD8266 Approved
0.5862 Remote Similarity NPD8268 Approved
0.5833 Remote Similarity NPD5697 Approved
0.5833 Remote Similarity NPD7341 Phase 2
0.5818 Remote Similarity NPD7102 Approved
0.5818 Remote Similarity NPD7290 Approved
0.5818 Remote Similarity NPD6883 Approved
0.5816 Remote Similarity NPD5737 Approved
0.5816 Remote Similarity NPD6672 Approved
0.5816 Remote Similarity NPD6903 Approved
0.5816 Remote Similarity NPD7513 Clinical (unspecified phase)
0.5804 Remote Similarity NPD8133 Approved
0.58 Remote Similarity NPD7515 Phase 2
0.5789 Remote Similarity NPD4788 Approved
0.578 Remote Similarity NPD7320 Approved
0.5769 Remote Similarity NPD3196 Approved
0.5769 Remote Similarity NPD3195 Phase 2
0.5769 Remote Similarity NPD9298 Approved
0.5769 Remote Similarity NPD3194 Approved
0.5769 Remote Similarity NPD615 Clinical (unspecified phase)
0.5769 Remote Similarity NPD4266 Approved
0.5766 Remote Similarity NPD6869 Approved
0.5766 Remote Similarity NPD6847 Approved
0.5766 Remote Similarity NPD6617 Approved
0.5766 Remote Similarity NPD8130 Phase 1
0.5763 Remote Similarity NPD7830 Approved
0.5763 Remote Similarity NPD7642 Approved
0.5763 Remote Similarity NPD7829 Approved
0.5753 Remote Similarity NPD634 Phase 3
0.5729 Remote Similarity NPD4786 Approved
0.5727 Remote Similarity NPD4061 Clinical (unspecified phase)
0.5727 Remote Similarity NPD6014 Approved
0.5727 Remote Similarity NPD6013 Approved
0.5727 Remote Similarity NPD6012 Approved
0.5714 Remote Similarity NPD7966 Clinical (unspecified phase)
0.5714 Remote Similarity NPD3186 Phase 1
0.5714 Remote Similarity NPD8297 Approved
0.5714 Remote Similarity NPD6882 Approved
0.5688 Remote Similarity NPD5954 Clinical (unspecified phase)
0.5688 Remote Similarity NPD5701 Approved
0.5684 Remote Similarity NPD3667 Approved
0.5652 Remote Similarity NPD7500 Approved
0.5644 Remote Similarity NPD5281 Approved
0.5644 Remote Similarity NPD5693 Phase 1
0.5644 Remote Similarity NPD5284 Approved
0.5641 Remote Similarity NPD3172 Approved
0.5638 Remote Similarity NPD4695 Discontinued
0.5636 Remote Similarity NPD6011 Approved
0.5631 Remote Similarity NPD6356 Clinical (unspecified phase)
0.5625 Remote Similarity NPD2204 Approved
0.5616 Remote Similarity NPD2699 Approved
0.5612 Remote Similarity NPD3618 Phase 1
0.5612 Remote Similarity NPD3574 Clinical (unspecified phase)
0.5607 Remote Similarity NPD7632 Discontinued
0.5603 Remote Similarity NPD7641 Discontinued
0.56 Remote Similarity NPD6125 Clinical (unspecified phase)
0.56 Remote Similarity NPD622 Approved

Structure

External Identifiers

PubChem CID   468953
ChEMBL   CHEMBL490329
ZINC  

Physicochemical Properties

Molecular Weight:  324.23
ALogP:  -3.4188
MLogP:  3.11
XLogP:  6.573
# Rotatable Bonds:  15
Polar Surface Area:  63.6
# H-Bond Aceptor:  4
# H-Bond Donor:  1
# Rings:  1
# Heavy Atoms:  23

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs