Natural Product: NPC194937

Natural Product ID:  NPC194937
Common Name:   Gardenoin D
IUPAC Name:  
Synonyms:   Gardenoin D
Molecular Formula:   C30H48O3
Standard InCHIKey:  JFCYFLMAPFEZKC-RISGNIHZSA-N
Standard InCHI:  InChI=1S/C30H48O3/c1-20(2)8-7-9-21(3)23-12-14-28(6)25-11-10-24(22(4)18-31)29(15-13-26(32)33)19-30(25,29)17-16-27(23,28)5/h8,21,23-25,31H,4,7,9-19H2,1-3,5-6H3,(H,32,33)/t21-,23-,24+,25+,27-,28+,29-,30+/m1/s1
Canonical SMILES:  OCC(=C)[C@@H]1CC[C@@H]2[C@]3([C@]1(CCC(=O)O)C3)CC[C@]1([C@@]2(C)CC[C@@H]1[C@@H](CCC=C(C)C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota Exudates PMID[20028108]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT323 Cell Line SW-620 Homo sapiens IC50 > 5 ug/ml 20022253
NPT65 Cell Line HepG2 Homo sapiens IC50 > 5 ug/ml 9917284
NPT2 Others Unspecified IC50 > 5 ug/ml PubChem BioAssay data set
NPT845 Cell Line BT-474 Homo sapiens IC50 > 5 ug/ml PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC194937 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC476038
0.9873 High Similarity NPC283733
0.9359 High Similarity NPC158846
0.9259 High Similarity NPC165064
0.9176 High Similarity NPC476187
0.9036 High Similarity NPC186975
0.8987 High Similarity NPC239098
0.8953 High Similarity NPC470113
0.8941 High Similarity NPC66344
0.8941 High Similarity NPC128496
0.8929 High Similarity NPC236618
0.8902 High Similarity NPC215893
0.8864 High Similarity NPC476174
0.8824 High Similarity NPC117122
0.881 High Similarity NPC155011
0.881 High Similarity NPC475007
0.881 High Similarity NPC70661
0.8764 High Similarity NPC29152
0.8706 High Similarity NPC474684
0.8706 High Similarity NPC142361
0.8706 High Similarity NPC96496
0.8706 High Similarity NPC128644
0.869 High Similarity NPC471224
0.869 High Similarity NPC269638
0.8667 High Similarity NPC156546
0.8659 High Similarity NPC147066
0.8652 High Similarity NPC293052
0.8642 High Similarity NPC477371
0.8588 High Similarity NPC469994
0.8571 High Similarity NPC164577
0.8571 High Similarity NPC19849
0.8571 High Similarity NPC472864
0.8554 High Similarity NPC477858
0.8519 High Similarity NPC321690
0.8506 High Similarity NPC475921
0.8506 High Similarity NPC474704
0.85 High Similarity NPC20466
0.8488 Intermediate Similarity NPC187376
0.8488 Intermediate Similarity NPC136948
0.8488 Intermediate Similarity NPC159046
0.8488 Intermediate Similarity NPC233836
0.8471 Intermediate Similarity NPC474083
0.8452 Intermediate Similarity NPC167103
0.8452 Intermediate Similarity NPC97913
0.8434 Intermediate Similarity NPC477372
0.8434 Intermediate Similarity NPC38350
0.8434 Intermediate Similarity NPC201912
0.8427 Intermediate Similarity NPC477855
0.8409 Intermediate Similarity NPC469400
0.8391 Intermediate Similarity NPC472870
0.8372 Intermediate Similarity NPC472869
0.8372 Intermediate Similarity NPC55309
0.8372 Intermediate Similarity NPC28252
0.8353 Intermediate Similarity NPC59453
0.8353 Intermediate Similarity NPC85774
0.8353 Intermediate Similarity NPC214043
0.8353 Intermediate Similarity NPC263974
0.8353 Intermediate Similarity NPC82902
0.8353 Intermediate Similarity NPC221758
0.8353 Intermediate Similarity NPC472865
0.8333 Intermediate Similarity NPC91369
0.8333 Intermediate Similarity NPC124207
0.8333 Intermediate Similarity NPC133391
0.8333 Intermediate Similarity NPC170985
0.8333 Intermediate Similarity NPC260956
0.8333 Intermediate Similarity NPC469406
0.8333 Intermediate Similarity NPC320514
0.8315 Intermediate Similarity NPC189520
0.8315 Intermediate Similarity NPC110923
0.8315 Intermediate Similarity NPC154101
0.8315 Intermediate Similarity NPC74296
0.8295 Intermediate Similarity NPC2983
0.8295 Intermediate Similarity NPC476733
0.8295 Intermediate Similarity NPC262043
0.8295 Intermediate Similarity NPC77168
0.8295 Intermediate Similarity NPC84271
0.8295 Intermediate Similarity NPC102414
0.8295 Intermediate Similarity NPC215029
0.8295 Intermediate Similarity NPC155479
0.8295 Intermediate Similarity NPC474570
0.8295 Intermediate Similarity NPC214387
0.8295 Intermediate Similarity NPC473999
0.8295 Intermediate Similarity NPC309603
0.8293 Intermediate Similarity NPC179028
0.828 Intermediate Similarity NPC470074
0.8276 Intermediate Similarity NPC312215
0.8276 Intermediate Similarity NPC167877
0.8276 Intermediate Similarity NPC317590
0.8272 Intermediate Similarity NPC246445
0.8261 Intermediate Similarity NPC475894
0.8261 Intermediate Similarity NPC107243
0.8256 Intermediate Similarity NPC29447
0.8256 Intermediate Similarity NPC474218
0.8256 Intermediate Similarity NPC469948
0.8256 Intermediate Similarity NPC202868
0.8242 Intermediate Similarity NPC84383
0.8235 Intermediate Similarity NPC83569
0.8235 Intermediate Similarity NPC477373
0.8235 Intermediate Similarity NPC310470
0.8235 Intermediate Similarity NPC69279
0.8235 Intermediate Similarity NPC245866
0.8228 Intermediate Similarity NPC160817
0.8222 Intermediate Similarity NPC470224
0.8222 Intermediate Similarity NPC470375
0.8222 Intermediate Similarity NPC243866
0.8222 Intermediate Similarity NPC476304
0.8222 Intermediate Similarity NPC470376
0.8214 Intermediate Similarity NPC103754
0.8214 Intermediate Similarity NPC229584
0.8214 Intermediate Similarity NPC14203
0.8214 Intermediate Similarity NPC474484
0.8211 Intermediate Similarity NPC476237
0.8202 Intermediate Similarity NPC477147
0.8202 Intermediate Similarity NPC477149
0.8202 Intermediate Similarity NPC471896
0.8202 Intermediate Similarity NPC48010
0.8193 Intermediate Similarity NPC215843
0.8193 Intermediate Similarity NPC274996
0.8193 Intermediate Similarity NPC196827
0.8193 Intermediate Similarity NPC327674
0.8182 Intermediate Similarity NPC16377
0.8182 Intermediate Similarity NPC242864
0.8182 Intermediate Similarity NPC146937
0.8182 Intermediate Similarity NPC294480
0.8172 Intermediate Similarity NPC98868
0.8171 Intermediate Similarity NPC471899
0.8171 Intermediate Similarity NPC107039
0.8171 Intermediate Similarity NPC471897
0.8171 Intermediate Similarity NPC68828
0.8171 Intermediate Similarity NPC66105
0.8171 Intermediate Similarity NPC61952
0.8161 Intermediate Similarity NPC474732
0.8161 Intermediate Similarity NPC31564
0.8161 Intermediate Similarity NPC145879
0.8161 Intermediate Similarity NPC82979
0.8161 Intermediate Similarity NPC322159
0.8161 Intermediate Similarity NPC51014
0.8161 Intermediate Similarity NPC474733
0.8161 Intermediate Similarity NPC474778
0.8161 Intermediate Similarity NPC212843
0.8152 Intermediate Similarity NPC327788
0.8152 Intermediate Similarity NPC235053
0.8152 Intermediate Similarity NPC250757
0.8152 Intermediate Similarity NPC301534
0.8152 Intermediate Similarity NPC472941
0.8152 Intermediate Similarity NPC456
0.8152 Intermediate Similarity NPC155676
0.8148 Intermediate Similarity NPC476844
0.8148 Intermediate Similarity NPC192540
0.8148 Intermediate Similarity NPC279666
0.8148 Intermediate Similarity NPC476795
0.814 Intermediate Similarity NPC237712
0.814 Intermediate Similarity NPC178025
0.814 Intermediate Similarity NPC473246
0.814 Intermediate Similarity NPC181743
0.814 Intermediate Similarity NPC16287
0.814 Intermediate Similarity NPC248758
0.8132 Intermediate Similarity NPC476186
0.8125 Intermediate Similarity NPC330659
0.8125 Intermediate Similarity NPC161187
0.8125 Intermediate Similarity NPC244708
0.8118 Intermediate Similarity NPC151519
0.8118 Intermediate Similarity NPC145143
0.8118 Intermediate Similarity NPC296367
0.8111 Intermediate Similarity NPC212301
0.8111 Intermediate Similarity NPC110657
0.8111 Intermediate Similarity NPC473998
0.8111 Intermediate Similarity NPC23217
0.8111 Intermediate Similarity NPC45269
0.8111 Intermediate Similarity NPC475806
0.8111 Intermediate Similarity NPC473986
0.8111 Intermediate Similarity NPC474018
0.8111 Intermediate Similarity NPC86266
0.8095 Intermediate Similarity NPC472478
0.8095 Intermediate Similarity NPC104545
0.809 Intermediate Similarity NPC262858
0.809 Intermediate Similarity NPC310236
0.809 Intermediate Similarity NPC174342
0.809 Intermediate Similarity NPC54689
0.809 Intermediate Similarity NPC281524
0.809 Intermediate Similarity NPC146554
0.809 Intermediate Similarity NPC472240
0.8085 Intermediate Similarity NPC218383
0.8085 Intermediate Similarity NPC477521
0.8085 Intermediate Similarity NPC476303
0.8077 Intermediate Similarity NPC160209
0.8072 Intermediate Similarity NPC269543
0.8072 Intermediate Similarity NPC297996
0.8072 Intermediate Similarity NPC260385
0.8072 Intermediate Similarity NPC321514
0.8072 Intermediate Similarity NPC59436
0.8072 Intermediate Similarity NPC280654
0.8072 Intermediate Similarity NPC110094
0.8072 Intermediate Similarity NPC82635
0.8072 Intermediate Similarity NPC198240
0.8072 Intermediate Similarity NPC247783
0.8068 Intermediate Similarity NPC90652
0.8068 Intermediate Similarity NPC58063
0.8068 Intermediate Similarity NPC475740
0.8068 Intermediate Similarity NPC93778

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC194937 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8353 Intermediate Similarity NPD4786 Approved
0.8118 Intermediate Similarity NPD3667 Approved
0.8046 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.8022 Intermediate Similarity NPD6399 Phase 3
0.7931 Intermediate Similarity NPD3666 Approved
0.7931 Intermediate Similarity NPD3133 Approved
0.7931 Intermediate Similarity NPD3665 Phase 1
0.7889 Intermediate Similarity NPD5328 Approved
0.7872 Intermediate Similarity NPD6084 Phase 2
0.7872 Intermediate Similarity NPD6083 Phase 2
0.7857 Intermediate Similarity NPD5784 Clinical (unspecified phase)
0.7778 Intermediate Similarity NPD6672 Approved
0.7778 Intermediate Similarity NPD5737 Approved
0.7753 Intermediate Similarity NPD7146 Approved
0.7753 Intermediate Similarity NPD7334 Approved
0.7753 Intermediate Similarity NPD7521 Approved
0.7753 Intermediate Similarity NPD3618 Phase 1
0.7753 Intermediate Similarity NPD6409 Approved
0.7753 Intermediate Similarity NPD6684 Approved
0.7753 Intermediate Similarity NPD5330 Approved
0.7717 Intermediate Similarity NPD6079 Approved
0.7701 Intermediate Similarity NPD4221 Approved
0.7701 Intermediate Similarity NPD4223 Phase 3
0.7692 Intermediate Similarity NPD4753 Phase 2
0.764 Intermediate Similarity NPD5329 Approved
0.7614 Intermediate Similarity NPD4788 Approved
0.7582 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD6903 Approved
0.7556 Intermediate Similarity NPD6098 Approved
0.7556 Intermediate Similarity NPD5279 Phase 3
0.7528 Intermediate Similarity NPD4197 Approved
0.7527 Intermediate Similarity NPD7515 Phase 2
0.7526 Intermediate Similarity NPD7640 Approved
0.7526 Intermediate Similarity NPD7639 Approved
0.75 Intermediate Similarity NPD4752 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD6942 Approved
0.75 Intermediate Similarity NPD7339 Approved
0.7474 Intermediate Similarity NPD5695 Phase 3
0.7474 Intermediate Similarity NPD6356 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD4202 Approved
0.7423 Intermediate Similarity NPD7638 Approved
0.7423 Intermediate Similarity NPD5696 Approved
0.7416 Intermediate Similarity NPD5362 Discontinued
0.7381 Intermediate Similarity NPD6924 Approved
0.7381 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD6926 Approved
0.7363 Intermediate Similarity NPD4690 Approved
0.7363 Intermediate Similarity NPD5205 Approved
0.7363 Intermediate Similarity NPD4693 Phase 3
0.7363 Intermediate Similarity NPD4689 Approved
0.7363 Intermediate Similarity NPD4138 Approved
0.7363 Intermediate Similarity NPD4688 Approved
0.7356 Intermediate Similarity NPD6929 Approved
0.7347 Intermediate Similarity NPD6404 Discontinued
0.734 Intermediate Similarity NPD8035 Phase 2
0.734 Intermediate Similarity NPD7637 Suspended
0.734 Intermediate Similarity NPD5284 Approved
0.734 Intermediate Similarity NPD5281 Approved
0.734 Intermediate Similarity NPD8034 Phase 2
0.7333 Intermediate Similarity NPD3668 Phase 3
0.7327 Intermediate Similarity NPD6402 Approved
0.7327 Intermediate Similarity NPD7128 Approved
0.7327 Intermediate Similarity NPD5739 Approved
0.7327 Intermediate Similarity NPD6675 Approved
0.7312 Intermediate Similarity NPD6904 Approved
0.7312 Intermediate Similarity NPD6080 Approved
0.7312 Intermediate Similarity NPD6673 Approved
0.7292 Intermediate Similarity NPD4629 Approved
0.7292 Intermediate Similarity NPD5210 Approved
0.7273 Intermediate Similarity NPD6931 Approved
0.7273 Intermediate Similarity NPD6930 Phase 2
0.7273 Intermediate Similarity NPD7525 Registered
0.725 Intermediate Similarity NPD3171 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD3617 Approved
0.7216 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.7216 Intermediate Similarity NPD5221 Approved
0.7216 Intermediate Similarity NPD4697 Phase 3
0.7216 Intermediate Similarity NPD5222 Approved
0.7209 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7209 Intermediate Similarity NPD6117 Approved
0.7209 Intermediate Similarity NPD6933 Approved
0.7204 Intermediate Similarity NPD5208 Approved
0.72 Intermediate Similarity NPD5211 Phase 2
0.7191 Intermediate Similarity NPD6902 Approved
0.7188 Intermediate Similarity NPD6001 Approved
0.7188 Intermediate Similarity NPD7748 Approved
0.7184 Intermediate Similarity NPD7320 Approved
0.7184 Intermediate Similarity NPD6881 Approved
0.7184 Intermediate Similarity NPD6899 Approved
0.7174 Intermediate Similarity NPD5690 Phase 2
0.7174 Intermediate Similarity NPD4694 Approved
0.7174 Intermediate Similarity NPD4623 Approved
0.7174 Intermediate Similarity NPD5280 Approved
0.7174 Intermediate Similarity NPD4519 Discontinued
0.7158 Intermediate Similarity NPD5693 Phase 1
0.7143 Intermediate Similarity NPD4755 Approved
0.7143 Intermediate Similarity NPD4243 Approved
0.7143 Intermediate Similarity NPD5173 Approved
0.713 Intermediate Similarity NPD7115 Discovery
0.7126 Intermediate Similarity NPD6116 Phase 1
0.7126 Intermediate Similarity NPD6925 Approved
0.7126 Intermediate Similarity NPD5776 Phase 2
0.7115 Intermediate Similarity NPD6373 Approved
0.7115 Intermediate Similarity NPD6372 Approved
0.7111 Intermediate Similarity NPD4269 Approved
0.7111 Intermediate Similarity NPD4270 Approved
0.7108 Intermediate Similarity NPD6922 Approved
0.7108 Intermediate Similarity NPD6923 Approved
0.7087 Intermediate Similarity NPD5697 Approved
0.7087 Intermediate Similarity NPD5701 Approved
0.7059 Intermediate Similarity NPD5141 Approved
0.7048 Intermediate Similarity NPD7290 Approved
0.7048 Intermediate Similarity NPD7102 Approved
0.7048 Intermediate Similarity NPD6883 Approved
0.7045 Intermediate Similarity NPD6118 Approved
0.7045 Intermediate Similarity NPD6114 Approved
0.7045 Intermediate Similarity NPD7145 Approved
0.7045 Intermediate Similarity NPD6115 Approved
0.7045 Intermediate Similarity NPD6697 Approved
0.7033 Intermediate Similarity NPD5332 Approved
0.7033 Intermediate Similarity NPD6695 Phase 3
0.7033 Intermediate Similarity NPD5331 Approved
0.7024 Intermediate Similarity NPD4747 Approved
0.7024 Intermediate Similarity NPD4789 Approved
0.7024 Intermediate Similarity NPD7143 Approved
0.7024 Intermediate Similarity NPD7144 Approved
0.7019 Intermediate Similarity NPD6011 Approved
0.7 Intermediate Similarity NPD4692 Approved
0.7 Intermediate Similarity NPD5286 Approved
0.7 Intermediate Similarity NPD4790 Discontinued
0.7 Intermediate Similarity NPD4700 Approved
0.7 Intermediate Similarity NPD4696 Approved
0.7 Intermediate Similarity NPD5285 Approved
0.7 Intermediate Similarity NPD4139 Approved
0.6989 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6981 Remote Similarity NPD6617 Approved
0.6981 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6981 Remote Similarity NPD6847 Approved
0.6981 Remote Similarity NPD8130 Phase 1
0.6981 Remote Similarity NPD6650 Approved
0.6981 Remote Similarity NPD6869 Approved
0.6981 Remote Similarity NPD6649 Approved
0.6979 Remote Similarity NPD6050 Approved
0.6977 Remote Similarity NPD4785 Approved
0.6977 Remote Similarity NPD4784 Approved
0.697 Remote Similarity NPD7902 Approved
0.6966 Remote Similarity NPD4195 Approved
0.6957 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6952 Remote Similarity NPD6013 Approved
0.6952 Remote Similarity NPD6012 Approved
0.6952 Remote Similarity NPD6014 Approved
0.6951 Remote Similarity NPD4224 Phase 2
0.6947 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6947 Remote Similarity NPD6051 Approved
0.6941 Remote Similarity NPD7150 Approved
0.6941 Remote Similarity NPD6081 Approved
0.6941 Remote Similarity NPD4809 Clinical (unspecified phase)
0.6941 Remote Similarity NPD7152 Approved
0.6941 Remote Similarity NPD7151 Approved
0.6941 Remote Similarity NPD4808 Clinical (unspecified phase)
0.6931 Remote Similarity NPD5223 Approved
0.6916 Remote Similarity NPD8297 Approved
0.6916 Remote Similarity NPD6882 Approved
0.6915 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6907 Remote Similarity NPD5133 Approved
0.6905 Remote Similarity NPD4137 Phase 3
0.6897 Remote Similarity NPD3702 Approved
0.6889 Remote Similarity NPD4252 Approved
0.6889 Remote Similarity NPD4822 Approved
0.6889 Remote Similarity NPD4821 Approved
0.6889 Remote Similarity NPD4819 Approved
0.6889 Remote Similarity NPD7514 Phase 3
0.6889 Remote Similarity NPD5368 Approved
0.6889 Remote Similarity NPD4695 Discontinued
0.6889 Remote Similarity NPD4820 Approved
0.6882 Remote Similarity NPD5363 Approved
0.6882 Remote Similarity NPD6893 Approved
0.6875 Remote Similarity NPD5785 Approved
0.6875 Remote Similarity NPD5207 Approved
0.6875 Remote Similarity NPD5692 Phase 3
0.6863 Remote Similarity NPD5224 Approved
0.6863 Remote Similarity NPD7632 Discontinued
0.6863 Remote Similarity NPD5225 Approved
0.6863 Remote Similarity NPD4633 Approved
0.6863 Remote Similarity NPD5226 Approved
0.6854 Remote Similarity NPD4268 Approved
0.6854 Remote Similarity NPD4271 Approved
0.6854 Remote Similarity NPD7322 Clinical (unspecified phase)
0.6848 Remote Similarity NPD7154 Phase 3
0.6824 Remote Similarity NPD4245 Approved
0.6824 Remote Similarity NPD4691 Approved
0.6824 Remote Similarity NPD4244 Approved
0.6813 Remote Similarity NPD5369 Approved
0.6809 Remote Similarity NPD5786 Approved
0.6804 Remote Similarity NPD5694 Approved
0.6804 Remote Similarity NPD6411 Approved
0.6796 Remote Similarity NPD4754 Approved
0.6796 Remote Similarity NPD5174 Approved
0.6796 Remote Similarity NPD5175 Approved
0.6786 Remote Similarity NPD3621 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   16099423
ChEMBL   CHEMBL552273
ZINC  

Physicochemical Properties

Molecular Weight:  456.36
ALogP:  3.0403
MLogP:  4.43
XLogP:  10.16
# Rotatable Bonds:  16
Polar Surface Area:  57.53
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  33

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs