Natural Product: NPC176521| Natural Product ID | NPC176521 |
|
Common Name
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
| NPJICTMALKLTFW-OXJCHFBDSA-N |
| IUPAC Name | n.a. |
| Synonyms | |
| Synthetic Gene Cluster | n.a. |
| ChEMBL Identifier | n.a. |
| PubChem CID | n.a. |
| Chemical Classification |
|
The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.
Chemical Representations
| Standard InCHIKey | NPJICTMALKLTFW-OXJCHFBDSA-N |
| Standard InCHI | InChI=1S/C35H60O6/c1-7-22(20(2)3)9-8-21(4)26-12-13-27-25-11-10-23-18-24(14-16-34(23,5)28(25)15-17-35(26,27)6)40-33-32(39)31(38)30(37)29(19-36)41-33/h10,20-22,24-33,36-39H,7-9,11-19H2,1-6H3/t21-,22+,24-,25+,26-,27-,28+,29-,30-,31+,32-,33+,34-,35-/m1/s1 |
| SMILES | CC[C@@H](CC[C@@H](C)[C@H]1CC[C@@H]2[C@@H]3CC=C4C[C@@H](CC[C@@]4(C)[C@H]3CC[C@]12C)O[C@@H]1[C@@H]([C@H]([C@@H]([C@@H](CO)O1)O)O)O)C(C)C |
  Calculated Properties| Molecular Weight:   | 576.44 | Volume:   | 621.239 Van der Waals volume.
|
| Dense:   | 0.928 | LogP:   | 5.35 The logarithm of the n-octanol/water distribution coefficients.
|
| logD7.4:   | 4.754 The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
|
LogS:   | -5.648 The logarithm of aqueous solubility value.
|
| Rotatable Bonds:   | 9.0 | Rigid Bonds:   | 26.0 |
| TPSA:   | 99.38 Topological Polar Surface Area.
|
H-Bond Acceptor:   | 6.0 |
| H-Bond Donor:   | 4.0 | Rings:   | 5.0 |
| Heavy Atoms:   | 6.0 |
| QED Drug-Likeness Score:   | 0.257 | GASA:   | 1.0 GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
|
| Synthetic Accessibility Score:   | 4.99 | Fsp3:   | 0.943 |
| MCE-18:   | 90.588 MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
|
Lipinski Rule-of-5:   | Accepted |
| Pfizer Rule:   | Rejected | GSK Rule:   | Accepted |
| Golden Triangle Rule:   | Accepted | BMS Rule:   | 0 |
| Chelating Alert:   | 0 | PAINS Alert:   | 0 |
| Colloidal aggregators:   | 0.981 | Fluc inhibitor:   | 0.0 The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
|
| Blue fluorescence:   | 0.008 The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
|
Green fluorescence:   | 0.0 The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
|
| Reactive compounds:   | 0.334 | Promiscuous compounds:   | 0.002 |
| Caco-2 Permeability:   | -5.613 | MDCK Permeability:   | -5.08 |
| Pgp-inhibitor:   | 0.011 | Pgp-substrate:   | 0.004 |
| PAMPA:   |
0.323 The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
|
Human Intestinal Absorption (HIA):   | 0.0 |
| 20% Bioavailability (F20%):   | 0.078 | 30% Bioavailability (F30%):   | 0.889 |
| 50% Bioavailability (F50%):   | 0.996 |
| Blood-Brain-Barrier Penetration (BBB):   | 0.0 | MRP1:   | 0.086 |
| Plasma Protein Binding (PPB):   | 86.854% | Volume Distribution (VD):   | -0.349 |
| Fu: |
11.966% The fraction unbound in plasms.
|
OATP1B1 inhibitor:   | 1.0 |
| OATP1B3 inhibitor:   | 0.999 | BCRP inhibitor:   | 0.001 |
| BSEP inhibitor:   | 0.001 |
| CYP1A2-inhibitor:   | 0.24 | CYP1A2-substrate:   | 0.0 |
| CYP2C19-inhibitor:   | 1.0 | CYP2C19-substrate:   | 0.099 |
| CYP2C9-inhibitor:   | 0.001 | CYP2C9-substrate:   | 0.002 |
| CYP2D6-inhibitor:   | 0.0 | CYP2D6-substrate:   | 0.005 |
| CYP3A4-inhibitor:   | 1.0 | CYP3A4-substrate:   | 1.0 |
| CYP2B6-substrate:   | 0.0 | CYP2C8-inhibitor:   | 1.0 |
| HLM stability:   |
0.565 Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.
|
| Clearance (CL):   | 2.378 | Half-life (T1/2):   | 1.226 |
| hERG Blockers:   | 0.055 | hERG Blockers (10um):   | 0.241 |
| Human Hepatotoxicity (H-HT):   | 0.793 | Drug-induced Liver Injury (DILI):   | 0.531 |
| AMES Toxicity:   | 0.274 | Rat Oral Acute Toxicity:   | 0.048 |
| Maximum Recommended Daily Dose:   | 0.113 | Skin Sensitization:   | 0.998 |
| Carcinogencity:   | 0.469 | Eye Corrosion:   | 0.002 |
| Eye Irritation:   | 0.601 | Respiratory Toxicity:   | 0.139 |
| Drug-induced Neurotoxicity:   | 0.023 | Ototoxicity:   | 0.942 |
| Hematotoxicity:   | 0.605 | Drug-induced Nephrotoxicity:   | 0.963 |
| Genotoxicity:   | 0.006 | RPMI-8226 Immunitoxicity:   | 0.159 |
| A549 Cytotoxicity:   | 0.85 | Hek293 Cytotoxicity:   | 0.36 |
| BCF:   |
2.928 Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
|
IGC50:   |
4.57 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
|
| LC50DM:   |
5.114 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
|
LC50FM:   |
5.179 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].
|
  Species Source| Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
|---|---|---|---|---|---|---|---|---|
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[ 17014425] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1002/bab.1236] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | seed | n.a. | DOI[10.1016/0031-9422(96)00258-0] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/j.indcrop.2010.09.006] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | fruit | n.a. | DOI[10.1016/S1383-5769(99)00023-9] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | rhizome | n.a. | DOI[10.1021/np100392m] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10086989] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | root | n.a. |
PMID[11374966] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11430011] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[12575075] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | stem | n.a. |
PMID[12575075] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[12932140] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | bulb | n.a. |
PMID[14994197] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[1512598] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | Seeds | n.a. | n.a. |
PMID[15165151] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | roots | n.a. | n.a. |
PMID[15387651] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | whole plant | n.a. |
PMID[15577255] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[15844951] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[16038550] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[16562834] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | tubers | n.a. | n.a. |
PMID[16792409] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[17583950] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | fruit | Indonesia | n.a. |
PMID[17896817] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | rhizome | n.a. |
PMID[18787781] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18855446] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | Vietnam | n.a. |
PMID[19026551] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | root | n.a. |
PMID[19157126] |
| NPO31564 | Cimicifuga foetida | n.a. | n.a. | n.a. | n.a. | aerial part | n.a. |
PMID[19280146] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | seeds | n.a. | n.a. |
PMID[20050684] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20455578] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | roots and rhizomes | Shaoguan, Guangdong Province, China | 2007-Dec |
PMID[20540535] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | Rhizomes | n.a. | n.a. |
PMID[20879743] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21070010] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | aerial part | n.a. |
PMID[21070010] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | seed | n.a. |
PMID[21287989] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21302967] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[21384845] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | Leaves | Huangshan, Anhui Province, China | 2008-NOV |
PMID[21384845] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | calyx | n.a. |
PMID[21561086] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21775156] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21807513] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | whole plant | n.a. |
PMID[21899269] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | Seeds | n.a. | n.a. |
PMID[22506620] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23286284] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23632365] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | fruit | n.a. |
PMID[24086493] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24108414] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | fruit | n.a. |
PMID[24155209] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24959987] |
| NPO31564 | Cimicifuga foetida | n.a. | n.a. | n.a. | rhizomes | n.a. | n.a. |
PMID[25136911] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25302569] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25900014] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26562611] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[27228227] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[27569393] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[29185738] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[30188125] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[30351923] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[31397570] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | root | n.a. |
PMID[3655791] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37324556] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37446592] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[38961030] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[6481366] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7561896] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7673942] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[9544564] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | roots | n.a. | n.a. |
PMID[9834151] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO31564 | Cimicifuga foetida | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO27018 | Cynomorium songaricum | Species | Cynomoriaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4414 | Lilium lancifolium | Species | Liliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO29146 | Polygonatum kingianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO30242 | Sterculia lychnophora | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO30972 | Morinda officinalis | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO27018 | Cynomorium songaricum | Species | Cynomoriaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO31564 | Cimicifuga foetida | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO30242 | Sterculia lychnophora | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO30972 | Morinda officinalis | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO4414 | Lilium lancifolium | Species | Liliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO27018 | Cynomorium songaricum | Species | Cynomoriaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO29146 | Polygonatum kingianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO30972 | Morinda officinalis | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO29146 | Polygonatum kingianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO30242 | Sterculia lychnophora | Species | Malvaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO29449 | Boehmeria nivea | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO31387 | Stiff silkworm | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO27018 | Cynomorium songaricum | Species | Cynomoriaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO4414 | Lilium lancifolium | Species | Liliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO31564 | Cimicifuga foetida | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO4414 | Lilium lancifolium | Species | Liliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO27018 | Cynomorium songaricum | Species | Cynomoriaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO29449 | Boehmeria nivea | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO29146 | Polygonatum kingianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO20652 | Phytolacca acinosa | Species | Phytolaccaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20096 | Cirsium japonicum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8918 | Plantago depressa | Species | Plantaginaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1756 | Cremastra appendiculata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29146 | Polygonatum kingianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO15077 | Achyranthes bidentata | Species | Amaranthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7372 | Rosa laevigata | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29449 | Boehmeria nivea | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4414 | Lilium lancifolium | Species | Liliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4340 | Peucedanum praeruptorum | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16087 | Atractylodes lancea | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO23429 | Lycium barbarum | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29209 | Litchi chinensis | Species | Sapindaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13989 | Uncaria macrophylla | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22741 | Curcuma kwangsiensis | Species | Zingiberaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO18296 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29463 | Pogostemon cablin | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8187 | Schisandra chinensis | Species | Schisandraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14650 | Lobelia chinensis | Species | Campanulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO6715 | Pseudostellaria heterophylla | Species | Caryophyllaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO6583 | Clematis chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration| Organism ID | Organism Name | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
|---|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Biological Activity
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
Experimental ADME
| Experiment Model | Experiment Tissue | ADME Type | ADME Relation | ADME Value | ADME Unit | Reference |
|---|
Experimental Toxicity
| Experiment Model | Experiment Organism | Toxicity Type | Toxicity Relation | Toxicity Value | Toxicity Unit | Reference |
|---|
Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria
| Hepatotoxicity | Carcinogenicity | Mutagenicity | Cardiotoxicity | Respiratory Toxicity | Eye Irritation | Endocrine Disruption |
|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]
  Chemically structural similarityTop-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)
Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.
●  The left chart: Distribution of similarity level between NPC176521 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Natural Product ID |
|---|---|---|
| 1.0 | High Similarity | NPC22140 |
| 1.0 | High Similarity | NPC243728 |
| 0.7973 | Intermediate Similarity | NPC486114 |
| 0.7971 | Intermediate Similarity | NPC158088 |
| 0.7681 | Intermediate Similarity | NPC473890 |
| 0.7606 | Intermediate Similarity | NPC470434 |
| 0.75 | Intermediate Similarity | NPC282669 |
| 0.726 | Intermediate Similarity | NPC608180 |
| 0.7215 | Intermediate Similarity | NPC295389 |
| 0.6585 | Remote Similarity | NPC272015 |
| 0.6471 | Remote Similarity | NPC44083 |
| 0.6301 | Remote Similarity | NPC207617 |
| 0.6301 | Remote Similarity | NPC607440 |
| 0.622 | Remote Similarity | NPC296686 |
| 0.6071 | Remote Similarity | NPC181845 |
| 0.5882 | Remote Similarity | NPC230301 |
| 0.5696 | Remote Similarity | NPC21064 |
| 0.5543 | Remote Similarity | NPC295980 |
| 0.5532 | Remote Similarity | NPC470748 |
| 0.5529 | Remote Similarity | NPC242748 |
| 0.55 | Remote Similarity | NPC285231 |
| 0.5465 | Remote Similarity | NPC220048 |
| 0.5444 | Remote Similarity | NPC86020 |
| 0.5443 | Remote Similarity | NPC267510 |
| 0.5402 | Remote Similarity | NPC318135 |
| 0.5375 | Remote Similarity | NPC154452 |
| 0.5375 | Remote Similarity | NPC121072 |
| 0.5319 | Remote Similarity | NPC94272 |
| 0.5287 | Remote Similarity | NPC251614 |
| 0.5217 | Remote Similarity | NPC162742 |
| 0.5217 | Remote Similarity | NPC304309 |
| 0.5217 | Remote Similarity | NPC470228 |
| 0.5211 | Remote Similarity | NPC20610 |
| 0.5205 | Remote Similarity | NPC153987 |
| 0.5152 | Remote Similarity | NPC477809 |
| 0.5102 | Remote Similarity | NPC98696 |
| 0.5102 | Remote Similarity | NPC486388 |
| 0.51 | Remote Similarity | NPC6806 |
| 0.5056 | Remote Similarity | NPC165439 |
| 0.5052 | Remote Similarity | NPC305423 |
| 0.5052 | Remote Similarity | NPC113044 |
| 0.5052 | Remote Similarity | NPC283829 |
| 0.5052 | Remote Similarity | NPC14704 |
| 0.5052 | Remote Similarity | NPC161676 |
| 0.5052 | Remote Similarity | NPC600116 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC176521 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Drug ID | Developmental Stage |
|---|---|---|---|
| 0.5882 | Remote Similarity | NPD7339 | Approved |
  Bioactivity similaritySimilarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.
