Natural Product: NPC475632

Natural Product ID:  NPC475632
Common Name:   (2S)-2-[(3S,8R,9S,10R,13S,14S,16S,17S)-16-[(2S,3R,4S,5S)-3,5-Dihydroxy-4-[(2S,3R,4S,5R)-3,4,5-Trihydroxyoxan-2-Yl]Oxyoxan-2-Yl]Oxy-3,17-Dihydroxy-10,13-Dimethyl-1,2,3,4,7,8,9,11,12,14,15,16-Dodecahydrocyclopenta[A]Phenanthren-17-Yl]-6-Methylheptan-3-One
IUPAC Name:   (2S)-2-[(3S,8R,9S,10R,13S,14S,16S,17S)-16-[(2S,3R,4S,5S)-3,5-dihydroxy-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-3,17-dihydroxy-10,13-dimethyl-1,2,3,4,7,8,9,11,12,14,15,16-dodecahydrocyclopenta[a]phenanthren-17-yl]-6-methylheptan-3-one
Synonyms:  
Molecular Formula:   C37H60O12
Standard InCHIKey:  NBDNCFSGTFOYKR-GDHSCZBXSA-N
Standard InCHI:  InChI=1S/C37H60O12/c1-18(2)6-9-25(39)19(3)37(45)28(48-34-31(44)32(27(41)17-47-34)49-33-30(43)29(42)26(40)16-46-33)15-24-22-8-7-20-14-21(38)10-12-35(20,4)23(22)11-13-36(24,37)5/h7,18-19,21-24,26-34,38,40-45H,6,8-17H2,1-5H3/t19-,21+,22-,23+,24+,26-,27+,28+,29+,30-,31-,32+,33+,34+,35+,36+,37-/m1/s1
Canonical SMILES:  CC(CCC(=O)[C@H]([C@@]1(O)[C@@H](O[C@@H]2OC[C@@H]([C@@H]([C@H]2O)O[C@@H]2OC[C@H]([C@@H]([C@H]2O)O)O)O)C[C@@H]2[C@]1(C)CC[C@H]1[C@H]2CC=C2[C@]1(C)CC[C@@H](C2)O)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28180 Ornithogalum saundersiae Species Hyacinthaceae Eukaryota bulbs PMID[11170674]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT116 Cell Line HL-60 Homo sapiens IC50 = 190 nM 17938185

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC475632 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC86020
0.9818 High Similarity NPC475187
0.9643 High Similarity NPC156789
0.9558 High Similarity NPC160084
0.9474 High Similarity NPC473474
0.9358 High Similarity NPC210420
0.9358 High Similarity NPC474265
0.9211 High Similarity NPC475182
0.9204 High Similarity NPC161738
0.9189 High Similarity NPC473882
0.9189 High Similarity NPC474557
0.9174 High Similarity NPC154856
0.9174 High Similarity NPC52241
0.9174 High Similarity NPC475317
0.9107 High Similarity NPC279638
0.9043 High Similarity NPC249553
0.9043 High Similarity NPC182900
0.9009 High Similarity NPC130427
0.8981 High Similarity NPC474569
0.8974 High Similarity NPC248202
0.8966 High Similarity NPC169816
0.8966 High Similarity NPC305771
0.8966 High Similarity NPC475431
0.8966 High Similarity NPC15918
0.8966 High Similarity NPC94072
0.8957 High Similarity NPC471406
0.8929 High Similarity NPC477944
0.8929 High Similarity NPC260665
0.8879 High Similarity NPC476545
0.8879 High Similarity NPC476543
0.8879 High Similarity NPC476544
0.885 High Similarity NPC165439
0.8829 High Similarity NPC27551
0.8829 High Similarity NPC114961
0.8818 High Similarity NPC295980
0.8818 High Similarity NPC295389
0.8761 High Similarity NPC73455
0.8761 High Similarity NPC200944
0.8761 High Similarity NPC251309
0.875 High Similarity NPC470748
0.875 High Similarity NPC69273
0.875 High Similarity NPC293623
0.875 High Similarity NPC168899
0.8739 High Similarity NPC174367
0.8739 High Similarity NPC246205
0.8739 High Similarity NPC40440
0.8739 High Similarity NPC47113
0.8739 High Similarity NPC42482
0.8729 High Similarity NPC476542
0.8729 High Similarity NPC256983
0.8684 High Similarity NPC74727
0.8673 High Similarity NPC233003
0.8655 High Similarity NPC473505
0.8655 High Similarity NPC476674
0.8644 High Similarity NPC28532
0.8636 High Similarity NPC473923
0.8636 High Similarity NPC473476
0.8636 High Similarity NPC210178
0.8636 High Similarity NPC63023
0.8636 High Similarity NPC95243
0.8636 High Similarity NPC181845
0.8636 High Similarity NPC242748
0.8632 High Similarity NPC129393
0.8621 High Similarity NPC45475
0.8618 High Similarity NPC475487
0.8609 High Similarity NPC473126
0.8609 High Similarity NPC477031
0.8607 High Similarity NPC173347
0.8607 High Similarity NPC241008
0.8596 High Similarity NPC204458
0.8596 High Similarity NPC189884
0.8596 High Similarity NPC178981
0.8596 High Similarity NPC47063
0.8596 High Similarity NPC138334
0.8584 High Similarity NPC477032
0.8584 High Similarity NPC274833
0.8584 High Similarity NPC263827
0.8584 High Similarity NPC285410
0.8584 High Similarity NPC250481
0.8584 High Similarity NPC477028
0.8584 High Similarity NPC124677
0.8584 High Similarity NPC477073
0.8584 High Similarity NPC197231
0.8584 High Similarity NPC114188
0.8583 High Similarity NPC476673
0.8571 High Similarity NPC1980
0.8571 High Similarity NPC238005
0.8571 High Similarity NPC118225
0.8571 High Similarity NPC141196
0.8559 High Similarity NPC113044
0.8559 High Similarity NPC14704
0.8559 High Similarity NPC470432
0.8559 High Similarity NPC305423
0.8559 High Similarity NPC283829
0.8559 High Similarity NPC230507
0.8559 High Similarity NPC94272
0.8559 High Similarity NPC161676
0.8547 High Similarity NPC190939
0.8547 High Similarity NPC197003
0.8547 High Similarity NPC319570
0.8545 High Similarity NPC187400
0.8545 High Similarity NPC100955
0.8545 High Similarity NPC221562
0.8545 High Similarity NPC470885
0.8545 High Similarity NPC121566
0.8537 High Similarity NPC473519
0.8537 High Similarity NPC473805
0.8532 High Similarity NPC272015
0.8525 High Similarity NPC476966
0.8522 High Similarity NPC477580
0.8522 High Similarity NPC116024
0.8509 High Similarity NPC37739
0.8509 High Similarity NPC207845
0.8509 High Similarity NPC1046
0.8509 High Similarity NPC128925
0.8509 High Similarity NPC19888
0.8509 High Similarity NPC80843
0.8509 High Similarity NPC46388
0.8509 High Similarity NPC472719
0.8509 High Similarity NPC256798
0.8509 High Similarity NPC254255
0.85 High Similarity NPC318135
0.85 High Similarity NPC475194
0.85 High Similarity NPC177820
0.85 High Similarity NPC130229
0.85 High Similarity NPC30188
0.8496 Intermediate Similarity NPC106760
0.8496 Intermediate Similarity NPC129340
0.8482 Intermediate Similarity NPC476541
0.8482 Intermediate Similarity NPC98696
0.8482 Intermediate Similarity NPC476540
0.8482 Intermediate Similarity NPC476538
0.8482 Intermediate Similarity NPC476539
0.8475 Intermediate Similarity NPC308459
0.8475 Intermediate Similarity NPC473645
0.8475 Intermediate Similarity NPC473130
0.8468 Intermediate Similarity NPC316915
0.8468 Intermediate Similarity NPC26798
0.8468 Intermediate Similarity NPC102015
0.8468 Intermediate Similarity NPC309448
0.8468 Intermediate Similarity NPC162033
0.8462 Intermediate Similarity NPC239293
0.8462 Intermediate Similarity NPC470513
0.8462 Intermediate Similarity NPC105800
0.8462 Intermediate Similarity NPC470514
0.8462 Intermediate Similarity NPC232237
0.8448 Intermediate Similarity NPC160415
0.8448 Intermediate Similarity NPC58448
0.8448 Intermediate Similarity NPC37134
0.8448 Intermediate Similarity NPC291903
0.8443 Intermediate Similarity NPC311534
0.8435 Intermediate Similarity NPC477074
0.8435 Intermediate Similarity NPC269315
0.8435 Intermediate Similarity NPC475208
0.8435 Intermediate Similarity NPC102619
0.8435 Intermediate Similarity NPC238935
0.8435 Intermediate Similarity NPC271138
0.843 Intermediate Similarity NPC198714
0.843 Intermediate Similarity NPC104427
0.8421 Intermediate Similarity NPC191763
0.8421 Intermediate Similarity NPC269466
0.8421 Intermediate Similarity NPC211798
0.8421 Intermediate Similarity NPC108748
0.8421 Intermediate Similarity NPC473481
0.8421 Intermediate Similarity NPC235841
0.8421 Intermediate Similarity NPC11035
0.8421 Intermediate Similarity NPC297208
0.8421 Intermediate Similarity NPC13193
0.8421 Intermediate Similarity NPC31839
0.8421 Intermediate Similarity NPC30397
0.8407 Intermediate Similarity NPC306131
0.8407 Intermediate Similarity NPC477809
0.8407 Intermediate Similarity NPC300557
0.8407 Intermediate Similarity NPC84956
0.8407 Intermediate Similarity NPC102016
0.8407 Intermediate Similarity NPC22779
0.8407 Intermediate Similarity NPC73243
0.8407 Intermediate Similarity NPC475550
0.8407 Intermediate Similarity NPC150372
0.8407 Intermediate Similarity NPC224098
0.8407 Intermediate Similarity NPC249265
0.8407 Intermediate Similarity NPC477026
0.8407 Intermediate Similarity NPC244086
0.8407 Intermediate Similarity NPC309278
0.8407 Intermediate Similarity NPC208383
0.8407 Intermediate Similarity NPC46190
0.8407 Intermediate Similarity NPC232054
0.8407 Intermediate Similarity NPC265655
0.8407 Intermediate Similarity NPC477027
0.8407 Intermediate Similarity NPC6806
0.8407 Intermediate Similarity NPC95051
0.8407 Intermediate Similarity NPC477070
0.8407 Intermediate Similarity NPC171073
0.8407 Intermediate Similarity NPC470433
0.8407 Intermediate Similarity NPC218853
0.8407 Intermediate Similarity NPC194207
0.8407 Intermediate Similarity NPC8431
0.8407 Intermediate Similarity NPC475333
0.8407 Intermediate Similarity NPC218571
0.8407 Intermediate Similarity NPC248746

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC475632 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8727 High Similarity NPD6412 Phase 2
0.8182 Intermediate Similarity NPD6370 Approved
0.8145 Intermediate Similarity NPD7736 Approved
0.812 Intermediate Similarity NPD8133 Approved
0.8115 Intermediate Similarity NPD8328 Phase 3
0.8087 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.8067 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.8065 Intermediate Similarity NPD8293 Discontinued
0.8017 Intermediate Similarity NPD6054 Approved
0.8017 Intermediate Similarity NPD6059 Approved
0.7951 Intermediate Similarity NPD8033 Approved
0.7937 Intermediate Similarity NPD7319 Approved
0.7869 Intermediate Similarity NPD8377 Approved
0.7869 Intermediate Similarity NPD8294 Approved
0.784 Intermediate Similarity NPD7507 Approved
0.7805 Intermediate Similarity NPD8335 Approved
0.7805 Intermediate Similarity NPD8380 Approved
0.7805 Intermediate Similarity NPD8378 Approved
0.7805 Intermediate Similarity NPD6015 Approved
0.7805 Intermediate Similarity NPD8379 Approved
0.7805 Intermediate Similarity NPD6016 Approved
0.7805 Intermediate Similarity NPD8296 Approved
0.776 Intermediate Similarity NPD7492 Approved
0.7742 Intermediate Similarity NPD5988 Approved
0.7739 Intermediate Similarity NPD8170 Clinical (unspecified phase)
0.7724 Intermediate Similarity NPD6319 Approved
0.7698 Intermediate Similarity NPD6616 Approved
0.7638 Intermediate Similarity NPD7078 Approved
0.7561 Intermediate Similarity NPD7328 Approved
0.7561 Intermediate Similarity NPD7327 Approved
0.7542 Intermediate Similarity NPD6686 Approved
0.752 Intermediate Similarity NPD8513 Phase 3
0.752 Intermediate Similarity NPD8516 Approved
0.752 Intermediate Similarity NPD8517 Approved
0.752 Intermediate Similarity NPD8515 Approved
0.752 Intermediate Similarity NPD7503 Approved
0.75 Intermediate Similarity NPD7516 Approved
0.7477 Intermediate Similarity NPD6399 Phase 3
0.7442 Intermediate Similarity NPD6033 Approved
0.7438 Intermediate Similarity NPD8297 Approved
0.7438 Intermediate Similarity NPD6882 Approved
0.7417 Intermediate Similarity NPD4634 Approved
0.7402 Intermediate Similarity NPD6067 Discontinued
0.7339 Intermediate Similarity NPD6009 Approved
0.7339 Intermediate Similarity NPD7115 Discovery
0.7333 Intermediate Similarity NPD6373 Approved
0.7333 Intermediate Similarity NPD6372 Approved
0.7236 Intermediate Similarity NPD4632 Approved
0.7227 Intermediate Similarity NPD6402 Approved
0.7227 Intermediate Similarity NPD5739 Approved
0.7227 Intermediate Similarity NPD7128 Approved
0.7227 Intermediate Similarity NPD6675 Approved
0.7222 Intermediate Similarity NPD4786 Approved
0.7217 Intermediate Similarity NPD6083 Phase 2
0.7217 Intermediate Similarity NPD6084 Phase 2
0.7213 Intermediate Similarity NPD6650 Approved
0.7213 Intermediate Similarity NPD6649 Approved
0.7197 Intermediate Similarity NPD5956 Approved
0.7168 Intermediate Similarity NPD8171 Discontinued
0.7107 Intermediate Similarity NPD6881 Approved
0.7107 Intermediate Similarity NPD7320 Approved
0.7107 Intermediate Similarity NPD6899 Approved
0.709 Intermediate Similarity NPD8449 Approved
0.7083 Intermediate Similarity NPD6008 Approved
0.7073 Intermediate Similarity NPD8130 Phase 1
0.7073 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7069 Intermediate Similarity NPD4755 Approved
0.7054 Intermediate Similarity NPD4753 Phase 2
0.7037 Intermediate Similarity NPD8450 Suspended
0.7037 Intermediate Similarity NPD3667 Approved
0.7025 Intermediate Similarity NPD5701 Approved
0.7025 Intermediate Similarity NPD5697 Approved
0.7018 Intermediate Similarity NPD4202 Approved
0.7009 Intermediate Similarity NPD5696 Approved
0.6992 Remote Similarity NPD7102 Approved
0.6992 Remote Similarity NPD6883 Approved
0.6992 Remote Similarity NPD7290 Approved
0.6949 Remote Similarity NPD4696 Approved
0.6949 Remote Similarity NPD5285 Approved
0.6949 Remote Similarity NPD4700 Approved
0.6949 Remote Similarity NPD5286 Approved
0.6935 Remote Similarity NPD6617 Approved
0.6935 Remote Similarity NPD6869 Approved
0.6935 Remote Similarity NPD6847 Approved
0.6923 Remote Similarity NPD7902 Approved
0.6911 Remote Similarity NPD6013 Approved
0.6911 Remote Similarity NPD6014 Approved
0.6911 Remote Similarity NPD6012 Approved
0.6909 Remote Similarity NPD3666 Approved
0.6909 Remote Similarity NPD3133 Approved
0.6909 Remote Similarity NPD3665 Phase 1
0.6897 Remote Similarity NPD5210 Approved
0.6897 Remote Similarity NPD5695 Phase 3
0.6897 Remote Similarity NPD4629 Approved
0.687 Remote Similarity NPD7604 Phase 2
0.6846 Remote Similarity NPD5983 Phase 2
0.6833 Remote Similarity NPD5226 Approved
0.6833 Remote Similarity NPD4633 Approved
0.6833 Remote Similarity NPD5211 Phase 2
0.6833 Remote Similarity NPD5224 Approved
0.6833 Remote Similarity NPD5225 Approved
0.6829 Remote Similarity NPD6011 Approved
0.6829 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6822 Remote Similarity NPD4522 Approved
0.6814 Remote Similarity NPD7513 Clinical (unspecified phase)
0.681 Remote Similarity NPD7748 Approved
0.6803 Remote Similarity NPD4768 Approved
0.6803 Remote Similarity NPD4767 Approved
0.68 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6791 Remote Similarity NPD8337 Approved
0.6791 Remote Similarity NPD8336 Approved
0.6786 Remote Similarity NPD6684 Approved
0.6786 Remote Similarity NPD6409 Approved
0.6786 Remote Similarity NPD3618 Phase 1
0.6786 Remote Similarity NPD7334 Approved
0.6786 Remote Similarity NPD7146 Approved
0.6786 Remote Similarity NPD5330 Approved
0.6786 Remote Similarity NPD7521 Approved
0.6783 Remote Similarity NPD8034 Phase 2
0.6783 Remote Similarity NPD8035 Phase 2
0.6777 Remote Similarity NPD5174 Approved
0.6777 Remote Similarity NPD5175 Approved
0.6767 Remote Similarity NPD6336 Discontinued
0.6754 Remote Similarity NPD5328 Approved
0.675 Remote Similarity NPD5223 Approved
0.6727 Remote Similarity NPD4221 Approved
0.6727 Remote Similarity NPD4223 Phase 3
0.6723 Remote Similarity NPD7638 Approved
0.6721 Remote Similarity NPD5141 Approved
0.672 Remote Similarity NPD6371 Approved
0.6716 Remote Similarity NPD8074 Phase 3
0.6696 Remote Similarity NPD5329 Approved
0.6694 Remote Similarity NPD4730 Approved
0.6694 Remote Similarity NPD4729 Approved
0.6667 Remote Similarity NPD7639 Approved
0.6667 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7900 Approved
0.6667 Remote Similarity NPD7640 Approved
0.6667 Remote Similarity NPD6903 Approved
0.6639 Remote Similarity NPD4754 Approved
0.6638 Remote Similarity NPD7515 Phase 2
0.6638 Remote Similarity NPD5284 Approved
0.6638 Remote Similarity NPD5281 Approved
0.6638 Remote Similarity NPD6079 Approved
0.6637 Remote Similarity NPD6098 Approved
0.6637 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6614 Remote Similarity NPD6053 Discontinued
0.6613 Remote Similarity NPD7899 Clinical (unspecified phase)
0.661 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6609 Remote Similarity NPD6904 Approved
0.6609 Remote Similarity NPD6673 Approved
0.6609 Remote Similarity NPD6080 Approved
0.6607 Remote Similarity NPD3668 Phase 3
0.6607 Remote Similarity NPD4197 Approved
0.6589 Remote Similarity NPD6274 Approved
0.6587 Remote Similarity NPD5247 Approved
0.6587 Remote Similarity NPD5249 Phase 3
0.6587 Remote Similarity NPD5250 Approved
0.6587 Remote Similarity NPD5251 Approved
0.6587 Remote Similarity NPD5248 Approved
0.6579 Remote Similarity NPD7524 Approved
0.6565 Remote Similarity NPD7101 Approved
0.6565 Remote Similarity NPD7100 Approved
0.656 Remote Similarity NPD5128 Approved
0.6555 Remote Similarity NPD4697 Phase 3
0.6525 Remote Similarity NPD5282 Discontinued
0.6522 Remote Similarity NPD6672 Approved
0.6522 Remote Similarity NPD5737 Approved
0.6518 Remote Similarity NPD4788 Approved
0.6508 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6496 Remote Similarity NPD6411 Approved
0.6496 Remote Similarity NPD7637 Suspended
0.6491 Remote Similarity NPD4689 Approved
0.6491 Remote Similarity NPD5205 Approved
0.6491 Remote Similarity NPD4693 Phase 3
0.6491 Remote Similarity NPD4688 Approved
0.6491 Remote Similarity NPD4138 Approved
0.6491 Remote Similarity NPD4690 Approved
0.6489 Remote Similarity NPD6335 Approved
0.6486 Remote Similarity NPD5369 Approved
0.6481 Remote Similarity NPD3701 Clinical (unspecified phase)
0.6466 Remote Similarity NPD6908 Approved
0.6466 Remote Similarity NPD6909 Approved
0.646 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6457 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6446 Remote Similarity NPD4225 Approved
0.6435 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6417 Remote Similarity NPD5221 Approved
0.6417 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6417 Remote Similarity NPD5222 Approved
0.6412 Remote Similarity NPD8137 Clinical (unspecified phase)
0.6412 Remote Similarity NPD6317 Approved
0.6406 Remote Similarity NPD5217 Approved
0.6406 Remote Similarity NPD5216 Approved
0.6406 Remote Similarity NPD5215 Approved
0.6404 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6396 Remote Similarity NPD7525 Registered
0.6389 Remote Similarity NPD6942 Approved
0.6389 Remote Similarity NPD7339 Approved
0.6379 Remote Similarity NPD5208 Approved

Structure

External Identifiers

PubChem CID   44584790
ChEMBL   CHEMBL509794
ZINC  

Physicochemical Properties

Molecular Weight:  696.41
ALogP:  -2.43
MLogP:  4.21
XLogP:  2.444
# Rotatable Bonds:  21
Polar Surface Area:  195.6
# H-Bond Aceptor:  12
# H-Bond Donor:  7
# Rings:  6
# Heavy Atoms:  49

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs