Natural Product: NPC19888

Natural Product ID:  NPC19888
Common Name:   n.a.
IUPAC Name:  
Synonyms:  
Molecular Formula:   C39H62O15
Standard InCHIKey:  OUMHCRRSFXHRBM-UINYBCMNSA-N
Standard InCHI:  InChI=1S/C39H62O15/c1-17-12-25(41)39(49-16-17)19(3)38(48)26(54-39)14-37(47)23-7-6-20-13-21(8-10-35(20,4)22(23)9-11-36(37,38)5)51-34-32(30(45)28(43)24(15-40)52-34)53-33-31(46)29(44)27(42)18(2)50-33/h6,17-19,21-34,40-48H,7-16H2,1-5H3/t17-,18+,19+,21+,22+,23-,24-,25+,26+,27+,28-,29-,30+,31-,32-,33+,34-,35+,36+,37-,38-,39+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](O[C@H]2CC[C@]3(C(=CC[C@@H]4[C@@H]3CC[C@]3([C@@]4(O)C[C@H]4[C@]3(O)[C@H](C)[C@@]3(O4)OC[C@@H](C[C@@H]3O)C)C)C2)C)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO27960 Dioscorea polygonoides Species Dioscoreaceae Eukaryota tubers PMID[16038563]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT924 Cell Line HSC-2 Homo sapiens IC50 > 200000 nM 10.1016/j.indcrop.2012.05.026
NPT116 Cell Line HL-60 Homo sapiens IC50 > 200000 nM 16168652

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC19888 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9903 High Similarity NPC197231
0.9709 High Similarity NPC42482
0.9709 High Similarity NPC40440
0.9623 High Similarity NPC477810
0.9524 High Similarity NPC477032
0.9524 High Similarity NPC477028
0.9524 High Similarity NPC124677
0.9519 High Similarity NPC306131
0.9519 High Similarity NPC477026
0.9519 High Similarity NPC475670
0.9519 High Similarity NPC477027
0.9519 High Similarity NPC70204
0.9515 High Similarity NPC470432
0.9515 High Similarity NPC230507
0.9515 High Similarity NPC305423
0.9515 High Similarity NPC14704
0.9515 High Similarity NPC161676
0.9515 High Similarity NPC283829
0.9515 High Similarity NPC113044
0.9439 High Similarity NPC167183
0.9439 High Similarity NPC32707
0.9434 High Similarity NPC254255
0.9423 High Similarity NPC98696
0.9423 High Similarity NPC476538
0.9423 High Similarity NPC476541
0.9423 High Similarity NPC476539
0.9423 High Similarity NPC476540
0.9417 High Similarity NPC26798
0.9417 High Similarity NPC474569
0.9417 High Similarity NPC242748
0.9417 High Similarity NPC181845
0.9346 High Similarity NPC476693
0.9346 High Similarity NPC79900
0.934 High Similarity NPC294129
0.934 High Similarity NPC13193
0.934 High Similarity NPC475247
0.934 High Similarity NPC476547
0.9333 High Similarity NPC194207
0.9333 High Similarity NPC208383
0.9333 High Similarity NPC477809
0.9333 High Similarity NPC476835
0.9333 High Similarity NPC300557
0.9333 High Similarity NPC73243
0.9333 High Similarity NPC84956
0.9333 High Similarity NPC244086
0.9333 High Similarity NPC475550
0.9333 High Similarity NPC309278
0.9333 High Similarity NPC249265
0.9333 High Similarity NPC102016
0.9333 High Similarity NPC46190
0.9333 High Similarity NPC232054
0.9333 High Similarity NPC6806
0.9333 High Similarity NPC475333
0.9333 High Similarity NPC95051
0.9333 High Similarity NPC150372
0.9333 High Similarity NPC248746
0.9333 High Similarity NPC171073
0.9333 High Similarity NPC218571
0.9333 High Similarity NPC470433
0.9333 High Similarity NPC224098
0.9333 High Similarity NPC22779
0.9327 High Similarity NPC226642
0.9327 High Similarity NPC190395
0.932 High Similarity NPC187400
0.932 High Similarity NPC474464
0.932 High Similarity NPC221562
0.932 High Similarity NPC470885
0.9252 High Similarity NPC263359
0.9252 High Similarity NPC31896
0.9252 High Similarity NPC244431
0.9252 High Similarity NPC112274
0.9252 High Similarity NPC32361
0.9252 High Similarity NPC210569
0.9245 High Similarity NPC247037
0.9245 High Similarity NPC87998
0.9245 High Similarity NPC477811
0.9245 High Similarity NPC23808
0.9245 High Similarity NPC269297
0.9245 High Similarity NPC224314
0.9245 High Similarity NPC141433
0.9245 High Similarity NPC222202
0.9238 High Similarity NPC220427
0.9231 High Similarity NPC473923
0.9231 High Similarity NPC473476
0.9231 High Similarity NPC474015
0.9231 High Similarity NPC309448
0.9223 High Similarity NPC475701
0.9174 High Similarity NPC477031
0.9167 High Similarity NPC51154
0.9159 High Similarity NPC13190
0.9151 High Similarity NPC302057
0.9143 High Similarity NPC473469
0.9143 High Similarity NPC94272
0.9083 High Similarity NPC11548
0.9074 High Similarity NPC42171
0.9057 High Similarity NPC7213
0.9048 High Similarity NPC152584
0.9048 High Similarity NPC127801
0.9048 High Similarity NPC208594
0.9048 High Similarity NPC194842
0.9048 High Similarity NPC160816
0.9048 High Similarity NPC208477
0.9048 High Similarity NPC69737
0.9048 High Similarity NPC269627
0.9038 High Similarity NPC472252
0.9038 High Similarity NPC114874
0.9038 High Similarity NPC120123
0.9038 High Similarity NPC131479
0.9038 High Similarity NPC245280
0.9038 High Similarity NPC8039
0.9038 High Similarity NPC286969
0.9038 High Similarity NPC211879
0.9038 High Similarity NPC189852
0.9038 High Similarity NPC155010
0.9038 High Similarity NPC473020
0.9038 High Similarity NPC157659
0.9038 High Similarity NPC213190
0.9038 High Similarity NPC16520
0.9038 High Similarity NPC31907
0.9009 High Similarity NPC476691
0.9009 High Similarity NPC476692
0.9 High Similarity NPC477030
0.9 High Similarity NPC63609
0.9 High Similarity NPC477029
0.8991 High Similarity NPC476671
0.8991 High Similarity NPC469347
0.8991 High Similarity NPC144068
0.8991 High Similarity NPC476546
0.8991 High Similarity NPC469348
0.8981 High Similarity NPC114188
0.8981 High Similarity NPC470748
0.8972 High Similarity NPC250089
0.8972 High Similarity NPC128133
0.8972 High Similarity NPC14630
0.8972 High Similarity NPC157530
0.8962 High Similarity NPC208650
0.8962 High Similarity NPC181467
0.8962 High Similarity NPC63368
0.8962 High Similarity NPC14946
0.8952 High Similarity NPC273879
0.8952 High Similarity NPC475365
0.8952 High Similarity NPC165033
0.8952 High Similarity NPC471111
0.8942 High Similarity NPC288694
0.8942 High Similarity NPC272015
0.8942 High Similarity NPC136816
0.8942 High Similarity NPC312553
0.8942 High Similarity NPC159036
0.8919 High Similarity NPC20979
0.8919 High Similarity NPC477807
0.8919 High Similarity NPC476690
0.8919 High Similarity NPC100048
0.8909 High Similarity NPC208832
0.8909 High Similarity NPC477808
0.8899 High Similarity NPC308140
0.8879 High Similarity NPC180183
0.8879 High Similarity NPC295980
0.8879 High Similarity NPC159005
0.8879 High Similarity NPC6931
0.8879 High Similarity NPC246124
0.8857 High Similarity NPC16573
0.885 High Similarity NPC475358
0.885 High Similarity NPC473566
0.8846 High Similarity NPC47566
0.8846 High Similarity NPC4831
0.8846 High Similarity NPC88000
0.8846 High Similarity NPC309425
0.8846 High Similarity NPC474022
0.8846 High Similarity NPC129372
0.8846 High Similarity NPC160734
0.8846 High Similarity NPC472023
0.8839 High Similarity NPC475403
0.8839 High Similarity NPC160888
0.8839 High Similarity NPC10366
0.8835 High Similarity NPC216260
0.8835 High Similarity NPC5358
0.8829 High Similarity NPC148965
0.8829 High Similarity NPC212660
0.8818 High Similarity NPC307642
0.8785 High Similarity NPC231340
0.8774 High Similarity NPC75608
0.8774 High Similarity NPC312774
0.8774 High Similarity NPC475521
0.8761 High Similarity NPC473633
0.8761 High Similarity NPC476085
0.8761 High Similarity NPC195560
0.8761 High Similarity NPC229962
0.875 High Similarity NPC7341
0.875 High Similarity NPC473200
0.875 High Similarity NPC282669
0.8738 High Similarity NPC473890
0.8738 High Similarity NPC243728
0.8738 High Similarity NPC76486
0.8727 High Similarity NPC216595
0.8727 High Similarity NPC473567
0.8716 High Similarity NPC103627
0.8716 High Similarity NPC170974
0.8716 High Similarity NPC191439
0.8704 High Similarity NPC472897
0.8704 High Similarity NPC128123

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC19888 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8609 High Similarity NPD8033 Approved
0.8522 High Similarity NPD8377 Approved
0.8522 High Similarity NPD8294 Approved
0.8448 Intermediate Similarity NPD8379 Approved
0.8448 Intermediate Similarity NPD8296 Approved
0.8448 Intermediate Similarity NPD8378 Approved
0.8448 Intermediate Similarity NPD8335 Approved
0.8448 Intermediate Similarity NPD8380 Approved
0.8173 Intermediate Similarity NPD8171 Discontinued
0.8034 Intermediate Similarity NPD7328 Approved
0.8034 Intermediate Similarity NPD7327 Approved
0.7966 Intermediate Similarity NPD7516 Approved
0.7833 Intermediate Similarity NPD7503 Approved
0.7788 Intermediate Similarity NPD6412 Phase 2
0.7778 Intermediate Similarity NPD8449 Approved
0.7717 Intermediate Similarity NPD8450 Suspended
0.7692 Intermediate Similarity NPD8133 Approved
0.7623 Intermediate Similarity NPD6370 Approved
0.76 Intermediate Similarity NPD7736 Approved
0.7581 Intermediate Similarity NPD7507 Approved
0.752 Intermediate Similarity NPD8293 Discontinued
0.7459 Intermediate Similarity NPD6054 Approved
0.7459 Intermediate Similarity NPD6059 Approved
0.7456 Intermediate Similarity NPD8170 Clinical (unspecified phase)
0.7402 Intermediate Similarity NPD7319 Approved
0.735 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7258 Intermediate Similarity NPD6016 Approved
0.7258 Intermediate Similarity NPD6015 Approved
0.7222 Intermediate Similarity NPD7492 Approved
0.7213 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD5988 Approved
0.7165 Intermediate Similarity NPD6616 Approved
0.7143 Intermediate Similarity NPD6067 Discontinued
0.7143 Intermediate Similarity NPD8328 Phase 3
0.7109 Intermediate Similarity NPD7078 Approved
0.7019 Intermediate Similarity NPD7525 Registered
0.7019 Intermediate Similarity NPD6928 Phase 2
0.6984 Remote Similarity NPD8513 Phase 3
0.6984 Remote Similarity NPD8516 Approved
0.6984 Remote Similarity NPD8515 Approved
0.6984 Remote Similarity NPD8517 Approved
0.6923 Remote Similarity NPD6033 Approved
0.6905 Remote Similarity NPD6319 Approved
0.6885 Remote Similarity NPD8297 Approved
0.6885 Remote Similarity NPD6882 Approved
0.6881 Remote Similarity NPD7524 Approved
0.6833 Remote Similarity NPD6686 Approved
0.68 Remote Similarity NPD6009 Approved
0.6796 Remote Similarity NPD3701 Clinical (unspecified phase)
0.6762 Remote Similarity NPD7645 Phase 2
0.6759 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6727 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6699 Remote Similarity NPD7339 Approved
0.6699 Remote Similarity NPD6942 Approved
0.6694 Remote Similarity NPD7320 Approved
0.6694 Remote Similarity NPD4632 Approved
0.669 Remote Similarity NPD7625 Phase 1
0.6667 Remote Similarity NPD6008 Approved
0.6667 Remote Similarity NPD6402 Approved
0.6667 Remote Similarity NPD7128 Approved
0.6667 Remote Similarity NPD5739 Approved
0.6667 Remote Similarity NPD6695 Phase 3
0.6667 Remote Similarity NPD6675 Approved
0.6639 Remote Similarity NPD6372 Approved
0.6639 Remote Similarity NPD6373 Approved
0.6585 Remote Similarity NPD4634 Approved
0.6581 Remote Similarity NPD7638 Approved
0.6577 Remote Similarity NPD7750 Discontinued
0.6557 Remote Similarity NPD6881 Approved
0.6557 Remote Similarity NPD6899 Approved
0.6532 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6532 Remote Similarity NPD8130 Phase 1
0.6532 Remote Similarity NPD6650 Approved
0.6532 Remote Similarity NPD6649 Approved
0.6525 Remote Similarity NPD7640 Approved
0.6525 Remote Similarity NPD7639 Approved
0.6496 Remote Similarity NPD4755 Approved
0.6476 Remote Similarity NPD6933 Approved
0.6475 Remote Similarity NPD5701 Approved
0.6475 Remote Similarity NPD5697 Approved
0.6452 Remote Similarity NPD7290 Approved
0.6452 Remote Similarity NPD6883 Approved
0.6452 Remote Similarity NPD7102 Approved
0.6444 Remote Similarity NPD5956 Approved
0.6442 Remote Similarity NPD4785 Approved
0.6442 Remote Similarity NPD4784 Approved
0.6435 Remote Similarity NPD4202 Approved
0.6435 Remote Similarity NPD6399 Phase 3
0.6408 Remote Similarity NPD4243 Approved
0.6406 Remote Similarity NPD7115 Discovery
0.64 Remote Similarity NPD6847 Approved
0.64 Remote Similarity NPD6869 Approved
0.64 Remote Similarity NPD6617 Approved
0.6389 Remote Similarity NPD6930 Phase 2
0.6389 Remote Similarity NPD6931 Approved
0.6389 Remote Similarity NPD4748 Discontinued
0.6387 Remote Similarity NPD5285 Approved
0.6387 Remote Similarity NPD4700 Approved
0.6387 Remote Similarity NPD4696 Approved
0.6387 Remote Similarity NPD5286 Approved
0.6371 Remote Similarity NPD6014 Approved
0.6371 Remote Similarity NPD6012 Approved
0.6371 Remote Similarity NPD6013 Approved
0.6364 Remote Similarity NPD7604 Phase 2
0.6356 Remote Similarity NPD6084 Phase 2
0.6356 Remote Similarity NPD6083 Phase 2
0.6336 Remote Similarity NPD5983 Phase 2
0.6333 Remote Similarity NPD4159 Approved
0.6325 Remote Similarity NPD7991 Discontinued
0.6306 Remote Similarity NPD4786 Approved
0.6296 Remote Similarity NPD6929 Approved
0.629 Remote Similarity NPD6011 Approved
0.6286 Remote Similarity NPD6924 Approved
0.6286 Remote Similarity NPD6926 Approved
0.6281 Remote Similarity NPD5225 Approved
0.6281 Remote Similarity NPD5226 Approved
0.6281 Remote Similarity NPD4633 Approved
0.6281 Remote Similarity NPD5211 Phase 2
0.6281 Remote Similarity NPD5224 Approved
0.627 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6269 Remote Similarity NPD6336 Discontinued
0.6262 Remote Similarity NPD6932 Approved
0.626 Remote Similarity NPD4768 Approved
0.626 Remote Similarity NPD4767 Approved
0.6239 Remote Similarity NPD7748 Approved
0.623 Remote Similarity NPD5174 Approved
0.623 Remote Similarity NPD5175 Approved
0.622 Remote Similarity NPD6053 Discontinued
0.6218 Remote Similarity NPD7902 Approved
0.6207 Remote Similarity NPD7087 Discontinued
0.6207 Remote Similarity NPD8035 Phase 2
0.6207 Remote Similarity NPD8034 Phase 2
0.6198 Remote Similarity NPD5223 Approved
0.6186 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6179 Remote Similarity NPD5141 Approved
0.6174 Remote Similarity NPD4753 Phase 2
0.6174 Remote Similarity NPD5328 Approved
0.6174 Remote Similarity NPD6051 Approved
0.6167 Remote Similarity NPD4225 Approved
0.616 Remote Similarity NPD4729 Approved
0.616 Remote Similarity NPD4730 Approved
0.6147 Remote Similarity NPD6683 Phase 2
0.6132 Remote Similarity NPD1811 Approved
0.6132 Remote Similarity NPD1810 Approved
0.6126 Remote Similarity NPD3667 Approved
0.6121 Remote Similarity NPD3168 Discontinued
0.6111 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6111 Remote Similarity NPD5776 Phase 2
0.6111 Remote Similarity NPD6925 Approved
0.6106 Remote Similarity NPD6893 Approved
0.6103 Remote Similarity NPD8074 Phase 3
0.6098 Remote Similarity NPD4754 Approved
0.6091 Remote Similarity NPD7514 Phase 3
0.6091 Remote Similarity NPD7509 Discontinued
0.6077 Remote Similarity NPD6274 Approved
0.6075 Remote Similarity NPD4190 Phase 3
0.6075 Remote Similarity NPD5275 Approved
0.6068 Remote Similarity NPD7515 Phase 2
0.6068 Remote Similarity NPD6079 Approved
0.6063 Remote Similarity NPD5247 Approved
0.6063 Remote Similarity NPD5248 Approved
0.6063 Remote Similarity NPD5251 Approved
0.6063 Remote Similarity NPD5250 Approved
0.6063 Remote Similarity NPD5249 Phase 3
0.6061 Remote Similarity NPD7100 Approved
0.6061 Remote Similarity NPD7101 Approved
0.6058 Remote Similarity NPD4267 Clinical (unspecified phase)
0.6055 Remote Similarity NPD7145 Approved
0.6053 Remote Similarity NPD3618 Phase 1
0.605 Remote Similarity NPD5695 Phase 3
0.6033 Remote Similarity NPD5696 Approved
0.6032 Remote Similarity NPD5128 Approved
0.6018 Remote Similarity NPD3666 Approved
0.6018 Remote Similarity NPD3665 Phase 1
0.6018 Remote Similarity NPD3133 Approved
0.6016 Remote Similarity NPD7632 Discontinued
0.6 Remote Similarity NPD4195 Approved
0.5985 Remote Similarity NPD6335 Approved
0.597 Remote Similarity NPD6291 Clinical (unspecified phase)
0.597 Remote Similarity NPD6909 Approved
0.597 Remote Similarity NPD6908 Approved
0.5966 Remote Similarity NPD7900 Approved
0.5966 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5965 Remote Similarity NPD7520 Clinical (unspecified phase)
0.5951 Remote Similarity NPD7799 Discontinued
0.5948 Remote Similarity NPD7513 Clinical (unspecified phase)
0.5948 Remote Similarity NPD6903 Approved
0.5946 Remote Similarity NPD7332 Phase 2
0.5943 Remote Similarity NPD7152 Approved
0.5943 Remote Similarity NPD7150 Approved
0.5943 Remote Similarity NPD7151 Approved
0.5942 Remote Similarity NPD8337 Approved
0.5942 Remote Similarity NPD8336 Approved
0.5938 Remote Similarity NPD5955 Clinical (unspecified phase)
0.5935 Remote Similarity NPD5344 Discontinued
0.5932 Remote Similarity NPD7637 Suspended
0.5917 Remote Similarity NPD5210 Approved
0.5917 Remote Similarity NPD4629 Approved
0.5913 Remote Similarity NPD5330 Approved
0.5913 Remote Similarity NPD7146 Approved

Structure

External Identifiers

PubChem CID   11331726
ChEMBL   CHEMBL499489
ZINC  

Physicochemical Properties

Molecular Weight:  770.41
ALogP:  -4.3612
MLogP:  4.1
XLogP:  0.194
# Rotatable Bonds:  19
Polar Surface Area:  237.45
# H-Bond Aceptor:  15
# H-Bond Donor:  9
# Rings:  8
# Heavy Atoms:  54

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs