Natural Product: NPC263058

Natural Product ID:  NPC263058
Common Name:   Neamine
IUPAC Name:   (2R,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-[(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl]oxyoxane-3,4-diol
Synonyms:   Neamine
Molecular Formula:   C12H26N4O6
Standard InCHIKey:  SYJXFKPQNSDJLI-HKEUSBCWSA-N
Standard InCHI:  InChI=1S/C12H26N4O6/c13-2-5-8(18)9(19)6(16)12(21-5)22-11-4(15)1-3(14)7(17)10(11)20/h3-12,17-20H,1-2,13-16H2/t3-,4+,5-,6-,7+,8-,9-,10-,11-,12-/m1/s1
Canonical SMILES:  NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@H]([C@@H]([C@H]2O)O)N)[C@@H]([C@H]([C@@H]1O)O)N
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO22678 Streptomyces albogriseus Species Streptomycetaceae Bacteria StreptomeDB*
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria StreptomeDB*
NPO24176.21 Streptomyces fradiae ncimb 8233 Subspecies Streptomycetaceae Bacteria StreptomeDB*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT317 Uncleic Acid Nucleic Acid MIC > 100000 nM 9457241
NPT2 Others Unspecified Ratio = 24000000 M-1 s-1 9934457
NPT2 Others Unspecified Ratio = 1300000 M-1 s-1 9934457
NPT4978 Individual Protein Phosphatidylcholine-retinol O-acyltransferase Homo sapiens IC50 = 38600 nM 12617917
NPT4978 Individual Protein Phosphatidylcholine-retinol O-acyltransferase Homo sapiens IC50 = 102000 nM 12617917
NPT4978 Individual Protein Phosphatidylcholine-retinol O-acyltransferase Homo sapiens IC50 = 197000 nM 12617917
NPT4978 Individual Protein Phosphatidylcholine-retinol O-acyltransferase Homo sapiens IC50 = 198000 nM 12617917
NPT5553 Individual Protein Human immunodeficiency virus type 1 Tat protein Human immunodeficiency virus type 1 group M subtype B (isolate PCV12)(HIV-1) IC50 = 28000 nM 11229778
NPT4977 Individual Protein Human immunodeficiency virus type 1 REV Human immunodeficiency virus 1 IC50 = 21000 nM 11229778
NPT4383 Uncleic Acid Ribosomal RNA A-site Kd = 7800 nM 11206440
NPT2 Others Unspecified IC50 = 10000 nM 16153833
NPT2 Others Unspecified IC50 = 40000 nM 16153833
NPT4383 Uncleic Acid Ribosomal RNA A-site Kd = 5000 nM 16168642
NPT317 Uncleic Acid Nucleic Acid IC50 > 50000 nM 16168642
NPT4383 Uncleic Acid Ribosomal RNA A-site Kd = 7390 nM 16942021
NPT150 Individual Protein Anthrax lethal factor Bacillus anthracis Ki = 42900 nM 16870442
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 512 ug/ml 17088479
NPT19 Organism Escherichia coli Escherichia coli MIC = 96 ug/ml 17088479
NPT19 Organism Escherichia coli Escherichia coli MIC = 1536 ug/ml 17088479
NPT19 Organism Escherichia coli Escherichia coli MIC < 6.25 ug/ml 17317190
NPT938 Organism Cavia porcellus Cavia porcellus Activity = 0 % 17416529
NPT938 Organism Cavia porcellus Cavia porcellus Activity = 100 % 17416529
NPT32 Organism Mus musculus Mus musculus LD50 = 161 mg/kg 18790644
NPT19 Organism Escherichia coli Escherichia coli MIC = 96 ug/ml 18790644
NPT2 Others Unspecified Kd = 11000 nM 18829307
NPT2 Others Unspecified Kd = 26000 nM 18829307
NPT2 Others Unspecified Ratio = 2.36 18829307
NPT317 Uncleic Acid Nucleic Acid Kd = 19000 nM 19327991
NPT317 Uncleic Acid Nucleic Acid Kd = 24000 nM 19327991
NPT19 Organism Escherichia coli Escherichia coli MIC = 50000 nM 19327991
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 50000 nM 19327991
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 100000 nM 19327991
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 32 ug/ml 20000576
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 16 ug/ml 20000576
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC > 128 ug/ml 20000576
NPT2898 Organism Acinetobacter lwoffii Acinetobacter lwoffii MIC = 2 ug/ml 20000576
NPT2898 Organism Acinetobacter lwoffii Acinetobacter lwoffii MIC > 128 ug/ml 20000576
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 128 ug/ml 20000576
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 32 ug/ml 20000576
NPT19 Organism Escherichia coli Escherichia coli MIC = 32 ug/ml 20000576
NPT19 Organism Escherichia coli Escherichia coli MIC > 128 ug/ml 20000576
NPT1548 Organism Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 MIC > 128 ug/ml 20000576
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 128 ug/ml 20000576
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 2 ug/ml 20133139
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 16 ug/ml 20133139
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 125 ug/ml 20133139
NPT19 Organism Escherichia coli Escherichia coli MIC = 32 ug/ml 20133139
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 4 ug/ml 20133139
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 64 ug/ml 20133139
NPT317 Uncleic Acid Nucleic Acid EC50 = 9500 nM 21041083
NPT2 Others Unspecified IC50 = 5000 nM 21041083
NPT2 Others Unspecified IC50 = 120000 nM 21041083
NPT19 Organism Escherichia coli Escherichia coli MIC = 32 ug/ml 24083676
NPT19 Organism Escherichia coli Escherichia coli MIC > 128 ug/ml 24083676
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 32 ug/ml 24083676
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 128 ug/ml 24083676
NPT2898 Organism Acinetobacter lwoffii Acinetobacter lwoffii MIC > 128 ug/ml 24083676
NPT2898 Organism Acinetobacter lwoffii Acinetobacter lwoffii MIC = 2 ug/ml 24083676
NPT2 Others Unspecified MIC >= 128 ug/ml 24083676
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC > 128 ug/ml 24083676
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 16 ug/ml 24083676
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 32 ug/ml 24083676
NPT1466 Organism Escherichia coli K12 Escherichia coli K-12 MIC = 150 ug/ml 24457095
NPT1466 Organism Escherichia coli K12 Escherichia coli K-12 MIC = 300 ug/ml 24457095
NPT19 Organism Escherichia coli Escherichia coli MIC = 14 ug/ml 24457095
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 73 ug/ml 24457095
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 5 ug/ml 24457095
NPT2 Others Unspecified IC50 = 5000 nM 24457095
NPT2 Others Unspecified EC50 = 9500 nM 24457095
NPT2 Others Unspecified Kd = 10000 nM 28018574
NPT19 Organism Escherichia coli Escherichia coli MIC = 50000 nM 28018574
NPT2 Others Unspecified Kd = 5400 nM 25819332
NPT2 Others Unspecified Inhibition = 10 % 26264847
NPT2 Others Unspecified IC50 = 298000 nM 26264847
NPT2 Others Unspecified IC50 = 751000 nM 26264847
NPT2 Others Unspecified Kd = 160000 nM 26264847
NPT2 Others Unspecified Kd = 24900 nM 26264847
NPT2 Others Unspecified Kd = 187000 nM 26264847
NPT2 Others Unspecified Kd = 394000 nM 26264847
NPT2 Others Unspecified Ratio = 2.5 26264847
NPT2 Others Unspecified Kd = 248000 nM 26264847
NPT2 Others Unspecified Ratio = 1.5 26264847
NPT2 Others Unspecified Activity = 72 % 26264847

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC263058 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9868 High Similarity NPC315969
0.9383 High Similarity NPC477060
0.9383 High Similarity NPC314007
0.9383 High Similarity NPC214376
0.9383 High Similarity NPC314408
0.9383 High Similarity NPC43850
0.9383 High Similarity NPC123746
0.9259 High Similarity NPC313552
0.9157 High Similarity NPC195969
0.9157 High Similarity NPC176381
0.8837 High Similarity NPC315334
0.8636 High Similarity NPC330590
0.8261 Intermediate Similarity NPC315036
0.8261 Intermediate Similarity NPC56298
0.8261 Intermediate Similarity NPC471628
0.8171 Intermediate Similarity NPC318258
0.8026 Intermediate Similarity NPC322801
0.8026 Intermediate Similarity NPC129100
0.8026 Intermediate Similarity NPC291650
0.7812 Intermediate Similarity NPC221148
0.7529 Intermediate Similarity NPC70574
0.7525 Intermediate Similarity NPC121479
0.7525 Intermediate Similarity NPC57436
0.7412 Intermediate Similarity NPC98750
0.7412 Intermediate Similarity NPC316807
0.7356 Intermediate Similarity NPC271772
0.7356 Intermediate Similarity NPC36927
0.7326 Intermediate Similarity NPC100204
0.7326 Intermediate Similarity NPC83248
0.7312 Intermediate Similarity NPC328646
0.7308 Intermediate Similarity NPC241597
0.7273 Intermediate Similarity NPC165119
0.7253 Intermediate Similarity NPC470282
0.7143 Intermediate Similarity NPC306838
0.7073 Intermediate Similarity NPC223174
0.7073 Intermediate Similarity NPC327753
0.7073 Intermediate Similarity NPC327486
0.6818 Remote Similarity NPC150557
0.6786 Remote Similarity NPC94319
0.6739 Remote Similarity NPC192025
0.6739 Remote Similarity NPC125253
0.6739 Remote Similarity NPC253975
0.6705 Remote Similarity NPC314772
0.6705 Remote Similarity NPC314968
0.6667 Remote Similarity NPC471420
0.6667 Remote Similarity NPC83839
0.6477 Remote Similarity NPC244539
0.6458 Remote Similarity NPC470284
0.6404 Remote Similarity NPC313762
0.6263 Remote Similarity NPC208537
0.6263 Remote Similarity NPC270005
0.6262 Remote Similarity NPC317534
0.619 Remote Similarity NPC315980
0.6139 Remote Similarity NPC470283
0.6068 Remote Similarity NPC20035
0.6047 Remote Similarity NPC471418
0.6042 Remote Similarity NPC476523
0.6026 Remote Similarity NPC107914
0.6026 Remote Similarity NPC58629
0.6026 Remote Similarity NPC145112
0.6026 Remote Similarity NPC269166
0.6026 Remote Similarity NPC242073
0.6026 Remote Similarity NPC157514
0.6026 Remote Similarity NPC246558
0.6026 Remote Similarity NPC165198
0.6026 Remote Similarity NPC67660
0.6026 Remote Similarity NPC89145
0.6024 Remote Similarity NPC150680
0.6024 Remote Similarity NPC306462
0.6024 Remote Similarity NPC22774
0.6024 Remote Similarity NPC69669
0.6024 Remote Similarity NPC2432
0.6024 Remote Similarity NPC218150
0.5977 Remote Similarity NPC268922
0.5976 Remote Similarity NPC143326
0.5974 Remote Similarity NPC233726
0.5974 Remote Similarity NPC124963
0.5974 Remote Similarity NPC326533
0.5974 Remote Similarity NPC23134
0.5965 Remote Similarity NPC313813
0.5949 Remote Similarity NPC303727
0.5882 Remote Similarity NPC471780
0.5882 Remote Similarity NPC223386
0.5882 Remote Similarity NPC142290
0.5882 Remote Similarity NPC471892
0.5882 Remote Similarity NPC198341
0.5882 Remote Similarity NPC75435
0.5843 Remote Similarity NPC255535
0.5843 Remote Similarity NPC476695
0.5843 Remote Similarity NPC28959
0.5843 Remote Similarity NPC285014
0.5843 Remote Similarity NPC137554
0.5843 Remote Similarity NPC476696
0.5843 Remote Similarity NPC476694
0.5843 Remote Similarity NPC299603
0.5833 Remote Similarity NPC314398
0.5833 Remote Similarity NPC314413
0.5833 Remote Similarity NPC68327
0.5833 Remote Similarity NPC239705
0.5833 Remote Similarity NPC17455
0.5823 Remote Similarity NPC130683
0.5823 Remote Similarity NPC323361
0.5818 Remote Similarity NPC59589
0.5814 Remote Similarity NPC286851
0.5814 Remote Similarity NPC303798
0.5798 Remote Similarity NPC139857
0.5794 Remote Similarity NPC42320
0.5794 Remote Similarity NPC188453
0.578 Remote Similarity NPC62845
0.578 Remote Similarity NPC166242
0.578 Remote Similarity NPC92874
0.578 Remote Similarity NPC322449
0.578 Remote Similarity NPC189854
0.5732 Remote Similarity NPC472025
0.573 Remote Similarity NPC473710
0.573 Remote Similarity NPC475694
0.5727 Remote Similarity NPC10897
0.5727 Remote Similarity NPC325900
0.5714 Remote Similarity NPC42503
0.5714 Remote Similarity NPC299781
0.5714 Remote Similarity NPC157193
0.5714 Remote Similarity NPC282143
0.5702 Remote Similarity NPC75839
0.5663 Remote Similarity NPC290106
0.5663 Remote Similarity NPC290179
0.5663 Remote Similarity NPC317023
0.5663 Remote Similarity NPC193593
0.5663 Remote Similarity NPC76726
0.5663 Remote Similarity NPC34877
0.5663 Remote Similarity NPC143809
0.5644 Remote Similarity NPC292345
0.5641 Remote Similarity NPC323574
0.5632 Remote Similarity NPC69798
0.5632 Remote Similarity NPC101746
0.5632 Remote Similarity NPC473952
0.5632 Remote Similarity NPC77191
0.5632 Remote Similarity NPC116377
0.5631 Remote Similarity NPC61894
0.5631 Remote Similarity NPC475603
0.561 Remote Similarity NPC8979
0.561 Remote Similarity NPC148424
0.5604 Remote Similarity NPC474468

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC263058 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9383 High Similarity NPD3208 Approved
0.9383 High Similarity NPD3209 Approved
0.9383 High Similarity NPD3202 Approved
0.9383 High Similarity NPD2698 Approved
0.9383 High Similarity NPD3207 Approved
0.9383 High Similarity NPD3203 Approved
0.9383 High Similarity NPD3201 Approved
0.9259 High Similarity NPD3200 Clinical (unspecified phase)
0.9157 High Similarity NPD5796 Clinical (unspecified phase)
0.9157 High Similarity NPD5797 Approved
0.9157 High Similarity NPD5794 Approved
0.9157 High Similarity NPD5798 Approved
0.9157 High Similarity NPD5795 Approved
0.8636 High Similarity NPD5378 Approved
0.8636 High Similarity NPD5377 Approved
0.8636 High Similarity NPD5381 Approved
0.8444 Intermediate Similarity NPD4282 Approved
0.8261 Intermediate Similarity NPD4835 Approved
0.8261 Intermediate Similarity NPD4837 Approved
0.8261 Intermediate Similarity NPD4836 Approved
0.8261 Intermediate Similarity NPD4838 Approved
0.8026 Intermediate Similarity NPD9033 Approved
0.8026 Intermediate Similarity NPD9032 Approved
0.8026 Intermediate Similarity NPD9030 Approved
0.8026 Intermediate Similarity NPD9031 Approved
0.7835 Intermediate Similarity NPD5376 Approved
0.7812 Intermediate Similarity NPD1450 Approved
0.7812 Intermediate Similarity NPD1449 Approved
0.7525 Intermediate Similarity NPD35 Approved
0.7525 Intermediate Similarity NPD4833 Approved
0.7439 Intermediate Similarity NPD67 Phase 2
0.7439 Intermediate Similarity NPD9034 Approved
0.7374 Intermediate Similarity NPD2700 Approved
0.7308 Intermediate Similarity NPD3731 Phase 3
0.7282 Intermediate Similarity NPD2690 Discontinued
0.717 Intermediate Similarity NPD4832 Approved
0.717 Intermediate Similarity NPD4830 Approved
0.717 Intermediate Similarity NPD4831 Approved
0.7073 Intermediate Similarity NPD9445 Approved
0.701 Intermediate Similarity NPD6428 Approved
0.6786 Remote Similarity NPD4828 Approved
0.6786 Remote Similarity NPD4826 Approved
0.6786 Remote Similarity NPD4827 Approved
0.6786 Remote Similarity NPD6436 Phase 3
0.6759 Remote Similarity NPD3204 Clinical (unspecified phase)
0.6705 Remote Similarity NPD9435 Approved
0.6705 Remote Similarity NPD9434 Approved
0.6602 Remote Similarity NPD8045 Clinical (unspecified phase)
0.66 Remote Similarity NPD881 Approved
0.6562 Remote Similarity NPD3716 Discontinued
0.6296 Remote Similarity NPD6941 Approved
0.6222 Remote Similarity NPD372 Clinical (unspecified phase)
0.62 Remote Similarity NPD1446 Phase 3
0.62 Remote Similarity NPD1447 Phase 3
0.6186 Remote Similarity NPD4759 Clinical (unspecified phase)
0.6146 Remote Similarity NPD394 Phase 3
0.6067 Remote Similarity NPD389 Phase 3
0.6042 Remote Similarity NPD361 Discontinued
0.6026 Remote Similarity NPD892 Phase 3
0.6026 Remote Similarity NPD891 Phase 3
0.6026 Remote Similarity NPD888 Phase 3
0.6026 Remote Similarity NPD890 Clinical (unspecified phase)
0.6026 Remote Similarity NPD893 Approved
0.6024 Remote Similarity NPD9028 Phase 2
0.6024 Remote Similarity NPD9029 Phase 3
0.6024 Remote Similarity NPD9026 Phase 2
0.6024 Remote Similarity NPD9027 Phase 3
0.5974 Remote Similarity NPD904 Phase 3
0.5974 Remote Similarity NPD905 Approved
0.5946 Remote Similarity NPD8087 Discontinued
0.5905 Remote Similarity NPD2255 Approved
0.5888 Remote Similarity NPD7140 Approved
0.5888 Remote Similarity NPD7139 Approved
0.5888 Remote Similarity NPD7141 Clinical (unspecified phase)
0.5882 Remote Similarity NPD1457 Discontinued
0.5823 Remote Similarity NPD894 Approved
0.5823 Remote Similarity NPD887 Approved
0.5823 Remote Similarity NPD895 Approved
0.5823 Remote Similarity NPD889 Approved
0.5783 Remote Similarity NPD9239 Approved
0.5783 Remote Similarity NPD9455 Approved
0.5783 Remote Similarity NPD9240 Approved
0.5714 Remote Similarity NPD393 Approved
0.5702 Remote Similarity NPD591 Approved
0.5702 Remote Similarity NPD577 Phase 3
0.5696 Remote Similarity NPD2269 Approved
0.567 Remote Similarity NPD882 Phase 2
0.567 Remote Similarity NPD883 Phase 2
0.5644 Remote Similarity NPD618 Clinical (unspecified phase)
0.563 Remote Similarity NPD8345 Approved
0.563 Remote Similarity NPD8347 Approved
0.563 Remote Similarity NPD8346 Approved

Structure

External Identifiers

PubChem CID   72392
ChEMBL   CHEMBL427409
ZINC  

Physicochemical Properties

Molecular Weight:  322.19
ALogP:  -5.7468
MLogP:  1.68
XLogP:  -3.52
# Rotatable Bonds:  11
Polar Surface Area:  203.46
# H-Bond Aceptor:  10
# H-Bond Donor:  8
# Rings:  2
# Heavy Atoms:  22

Download Data

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Biological Activities  
Similar NPs/Drugs