Natural Product ID:   | NPC221148 |
Common Name:   | Spectinomycin |
IUPAC Name:   | |
Synonyms:   | Spectinomycin; Trobicin |
Molecular Formula:   | C14H24N2O7 |
Standard InCHIKey:   | UNFWWIHTNXNPBV-WXKVUWSESA-N |
Standard InCHI:   | InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1 |
Canonical SMILES:   | CN[C@H]1[C@H](O)[C@H]2O[C@@H]3O[C@H](C)CC(=O)[C@@]3(O[C@@H]2[C@H]([C@H]1O)NC)O |
First Find Year:   | |
Max Developmental Stage:   | |
Synthetic Gene Cluster:   | BGC0000715;BGC0000716 ; |
Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
---|---|---|---|---|---|---|---|---|
NPO28993.16 | Streptomyces venezuelae sm5 | Subspecies | Streptomycetaceae | Bacteria | StreptomeDB* | |||
NPO28993 | Streptomyces venezuelae | Species | Streptomycetaceae | Bacteria | StreptomeDB* | |||
NPO22373 | Streptomyces spectabilis | Species | Streptomycetaceae | Bacteria | StreptomeDB* |
Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
---|---|---|---|---|---|---|---|---|
NPT144 | Individual Protein | Telomerase reverse transcriptase | Homo sapiens | Inhibition | = | 0 | % | 15177454 |
NPT2 | Others | Unspecified | Inhibition | = | 0 | % | 15177454 | |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 256 | ug/ml | 17145801 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | < | 0.25 | ug/ml | 17145801 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 32 | ug/ml | 17145801 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 128 | ug/ml | 17145801 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 64 | ug/ml | 17145801 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 20 | ug/ml | 17210778 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | > | 300 | ug/ml | 17210778 |
NPT746 | Organism | Pasteurella multocida | Pasteurella multocida | MIC | > | 8192 | ug/ml | 17371823 |
NPT746 | Organism | Pasteurella multocida | Pasteurella multocida | MIC | = | 4096 | ug/ml | 17371823 |
NPT746 | Organism | Pasteurella multocida | Pasteurella multocida | MIC | = | 8192 | ug/ml | 17371823 |
NPT746 | Organism | Pasteurella multocida | Pasteurella multocida | MIC | = | 16 | ug/ml | 17371823 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 16 | ug/ml | 17438056 |
NPT566 | Organism | Salmonella typhimurium | Salmonella enterica subsp. enterica serovar Typhimurium | MIC | = | 32 | ug/ml | 17438056 |
NPT2756 | Organism | Mycoplasma putrefaciens | Mycoplasma putrefaciens | MIC50 | = | 16 | ug/ml | 17638695 |
NPT2756 | Organism | Mycoplasma putrefaciens | Mycoplasma putrefaciens | MIC90 | = | 16 | ug/ml | 17638695 |
NPT2756 | Organism | Mycoplasma putrefaciens | Mycoplasma putrefaciens | MIC | = | 32 | ug/ml | 17638695 |
NPT2756 | Organism | Mycoplasma putrefaciens | Mycoplasma putrefaciens | MIC90 | = | 32 | ug/ml | 17638695 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | > | 256 | ug/ml | 17875999 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 16 | ug/ml | 17875999 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC90 | = | 20 | ug/ml | 19959361 |
NPT16 | Organism | Staphylococcus aureus | Staphylococcus aureus | MIC | = | 128 | ug/ml | 20188576 |
NPT16 | Organism | Staphylococcus aureus | Staphylococcus aureus | MIC | = | 64 | ug/ml | 20008780 |
NPT1101 | Organism | Staphylococcus aureus subsp. aureus RN4220 | Staphylococcus aureus subsp. aureus RN4220 | MIC | = | 64 | ug/ml | 20008780 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | MIC | = | 8 | ug/ml | 18663018 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | MIC | = | 16 | ug/ml | 18663018 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 64 | ug/ml | 20498323 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 1024 | ug/ml | 20498323 |
NPT2907 | Organism | Burkholderia pseudomallei | Burkholderia pseudomallei | MIC | = | 2048 | ug/ml | 20498323 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 8 | ug/ml | 20547812 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 256 | ug/ml | 20547812 |
NPT2 | Others | Unspecified | MIC | = | 6 | ug/ml | 20547812 | |
NPT2 | Others | Unspecified | MIC | = | 128 | ug/ml | 20547812 | |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 4 | ug/ml | 20547812 |
NPT18 | Organism | Pseudomonas aeruginosa | Pseudomonas aeruginosa | MIC | = | 256 | ug/ml | 20547812 |
NPT18 | Organism | Pseudomonas aeruginosa | Pseudomonas aeruginosa | MIC | = | 512 | ug/ml | 20547812 |
NPT720 | Organism | Enterobacter aerogenes | Enterobacter aerogenes | MIC | = | 8 | ug/ml | 20547812 |
NPT720 | Organism | Enterobacter aerogenes | Enterobacter aerogenes | MIC | = | 128 | ug/ml | 20547812 |
NPT1101 | Organism | Staphylococcus aureus subsp. aureus RN4220 | Staphylococcus aureus subsp. aureus RN4220 | MIC | = | 64 | ug/ml | 18519725 |
NPT16 | Organism | Staphylococcus aureus | Staphylococcus aureus | MIC | = | 64 | ug/ml | 18519725 |
NPT566 | Organism | Salmonella typhimurium | Salmonella enterica subsp. enterica serovar Typhimurium | MIC | > | 256 | ug/ml | 19470505 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 25 | ug/ml | 20876376 |
NPT19 | Organism | Escherichia coli | Escherichia coli | MIC | = | 12.5 | ug/ml | 20876376 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | Activity | = | 100 | % | 21098249 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | MIC50 | <= | 32 | ug/ml | 21098249 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | MIC90 | <= | 32 | ug/ml | 21098249 |
NPT1522 | Organism | Neisseria gonorrhoeae | Neisseria gonorrhoeae | Activity | = | 0 | % | 21098249 |
NPT317 | Uncleic Acid | Nucleic Acid | Kd | > | 100000 | nM | 22257890 | |
NPT1107 | Organism | Mycobacterium smegmatis str. MC2 155 | Mycobacterium smegmatis str. MC2 155 | MIC | = | 32 | ug/ml | 23205944 |
NPT2759 | Organism | Streptomyces acidiscabies | Streptomyces acidiscabies | Activity | = | 59 | % | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | Activity | = | 1.1 | % | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | Activity | = | 0.8 | % | 10.1584/jpestics.28.183 |
NPT2759 | Organism | Streptomyces acidiscabies | Streptomyces acidiscabies | Activity | = | 8.31 | % | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | Activity | = | 5.01 | % | 10.1584/jpestics.28.183 |
NPT2758 | Organism | Streptomyces alboniger | Streptomyces alboniger | IZ | = | 35 | mm | 10.1584/jpestics.28.183 |
NPT2759 | Organism | Streptomyces acidiscabies | Streptomyces acidiscabies | IZ | = | 20 | mm | 10.1584/jpestics.28.183 |
NPT2759 | Organism | Streptomyces acidiscabies | Streptomyces acidiscabies | IZ | = | 31 | mm | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | IZ | = | 27 | mm | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | IZ | = | 19 | mm | 10.1584/jpestics.28.183 |
NPT2760 | Organism | Streptomyces scabiei | Streptomyces scabiei | IZ | = | 11 | mm | 10.1584/jpestics.28.183 |
NPT49 | Individual Protein | DNA-(apurinic or apyrimidinic site) lyase | Homo sapiens | Potency | 3548.1 | nM | PubChem BioAssay data set | |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 84.12 | nM | 10.1039/C3MD00387F |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 84.12 | nM | 24997576 |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 5.25 | nM | 24997576 |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | FC | = | 16 | 24997576 | |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | FC | = | 2 | 24997576 | |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | FC | = | 4 | 24997576 | |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 10.52 | nM | 24997576 |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 42.05 | nM | 24997576 |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | MIC99 | = | 21.04 | nM | 24997576 |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | Ratio | = | 0.062 | 24997576 | |
NPT602 | Organism | Mycobacterium smegmatis | Mycobacterium smegmatis | Ratio | = | 0.5 | 24997576 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC221148 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
Similarity Score | Similarity Level | Natural Product ID |
---|---|---|
0.7981 | Intermediate Similarity | NPC56298 |
0.7981 | Intermediate Similarity | NPC471628 |
0.7981 | Intermediate Similarity | NPC315036 |
0.7895 | Intermediate Similarity | NPC315969 |
0.7845 | Intermediate Similarity | NPC94319 |
0.7812 | Intermediate Similarity | NPC263058 |
0.7778 | Intermediate Similarity | NPC477060 |
0.7778 | Intermediate Similarity | NPC123746 |
0.7778 | Intermediate Similarity | NPC43850 |
0.7778 | Intermediate Similarity | NPC314007 |
0.7778 | Intermediate Similarity | NPC314408 |
0.7624 | Intermediate Similarity | NPC176381 |
0.7624 | Intermediate Similarity | NPC195969 |
0.75 | Intermediate Similarity | NPC313552 |
0.7429 | Intermediate Similarity | NPC330590 |
0.7426 | Intermediate Similarity | NPC214376 |
0.7404 | Intermediate Similarity | NPC315334 |
0.7345 | Intermediate Similarity | NPC121479 |
0.7345 | Intermediate Similarity | NPC57436 |
0.7143 | Intermediate Similarity | NPC70574 |
0.7041 | Intermediate Similarity | NPC98750 |
0.7009 | Intermediate Similarity | NPC241597 |
0.7 | Intermediate Similarity | NPC36927 |
0.7 | Intermediate Similarity | NPC271772 |
0.697 | Remote Similarity | NPC318258 |
0.6827 | Remote Similarity | NPC306838 |
0.6822 | Remote Similarity | NPC328646 |
0.68 | Remote Similarity | NPC83248 |
0.68 | Remote Similarity | NPC100204 |
0.6765 | Remote Similarity | NPC165119 |
0.6535 | Remote Similarity | NPC316807 |
0.6535 | Remote Similarity | NPC150557 |
0.6476 | Remote Similarity | NPC192025 |
0.6476 | Remote Similarity | NPC125253 |
0.6476 | Remote Similarity | NPC253975 |
0.6421 | Remote Similarity | NPC322801 |
0.6421 | Remote Similarity | NPC291650 |
0.6421 | Remote Similarity | NPC129100 |
0.6408 | Remote Similarity | NPC471420 |
0.6348 | Remote Similarity | NPC188453 |
0.6348 | Remote Similarity | NPC42320 |
0.6296 | Remote Similarity | NPC470282 |
0.6262 | Remote Similarity | NPC83839 |
0.6172 | Remote Similarity | NPC139857 |
0.6083 | Remote Similarity | NPC137453 |
0.6077 | Remote Similarity | NPC75839 |
0.6077 | Remote Similarity | NPC68327 |
0.6071 | Remote Similarity | NPC208537 |
0.6071 | Remote Similarity | NPC270005 |
0.6061 | Remote Similarity | NPC223174 |
0.6061 | Remote Similarity | NPC327486 |
0.6061 | Remote Similarity | NPC327753 |
0.6047 | Remote Similarity | NPC20035 |
0.5962 | Remote Similarity | NPC314968 |
0.5962 | Remote Similarity | NPC314772 |
0.5946 | Remote Similarity | NPC292345 |
0.5882 | Remote Similarity | NPC227622 |
0.5827 | Remote Similarity | NPC313813 |
0.5826 | Remote Similarity | NPC470283 |
0.5816 | Remote Similarity | NPC315980 |
0.5804 | Remote Similarity | NPC470284 |
0.58 | Remote Similarity | NPC268922 |
0.5769 | Remote Similarity | NPC305261 |
0.5714 | Remote Similarity | NPC314306 |
0.57 | Remote Similarity | NPC471418 |
0.5686 | Remote Similarity | NPC476695 |
0.5686 | Remote Similarity | NPC476694 |
0.5686 | Remote Similarity | NPC476696 |
0.567 | Remote Similarity | NPC22774 |
0.567 | Remote Similarity | NPC150680 |
0.567 | Remote Similarity | NPC306462 |
0.567 | Remote Similarity | NPC218150 |
0.567 | Remote Similarity | NPC69669 |
0.567 | Remote Similarity | NPC2432 |
0.5657 | Remote Similarity | NPC303798 |
0.5657 | Remote Similarity | NPC286851 |
0.5656 | Remote Similarity | NPC189854 |
0.5656 | Remote Similarity | NPC92874 |
0.5656 | Remote Similarity | NPC62845 |
0.5656 | Remote Similarity | NPC166242 |
0.5656 | Remote Similarity | NPC322449 |
0.5625 | Remote Similarity | NPC259586 |
0.562 | Remote Similarity | NPC251884 |
0.561 | Remote Similarity | NPC10897 |
0.561 | Remote Similarity | NPC325900 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC221148 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
Similarity Score | Similarity Level | Drug ID | Developmental Stage |
---|---|---|---|
1.0 | High Similarity | NPD1449 | Approved |
1.0 | High Similarity | NPD1450 | Approved |
0.9314 | High Similarity | NPD2690 | Discontinued |
0.8137 | Intermediate Similarity | NPD4282 | Approved |
0.7981 | Intermediate Similarity | NPD4835 | Approved |
0.7981 | Intermediate Similarity | NPD4836 | Approved |
0.7981 | Intermediate Similarity | NPD4837 | Approved |
0.7981 | Intermediate Similarity | NPD4838 | Approved |
0.7857 | Intermediate Similarity | NPD3200 | Clinical (unspecified phase) |
0.7845 | Intermediate Similarity | NPD4827 | Approved |
0.7845 | Intermediate Similarity | NPD4828 | Approved |
0.7845 | Intermediate Similarity | NPD4826 | Approved |
0.7778 | Intermediate Similarity | NPD3202 | Approved |
0.7778 | Intermediate Similarity | NPD3203 | Approved |
0.7778 | Intermediate Similarity | NPD3209 | Approved |
0.7778 | Intermediate Similarity | NPD3207 | Approved |
0.7778 | Intermediate Similarity | NPD3208 | Approved |
0.7778 | Intermediate Similarity | NPD3201 | Approved |
0.7624 | Intermediate Similarity | NPD5794 | Approved |
0.7624 | Intermediate Similarity | NPD5795 | Approved |
0.7624 | Intermediate Similarity | NPD5796 | Clinical (unspecified phase) |
0.7624 | Intermediate Similarity | NPD5798 | Approved |
0.7624 | Intermediate Similarity | NPD5797 | Approved |
0.7615 | Intermediate Similarity | NPD5376 | Approved |
0.7429 | Intermediate Similarity | NPD5378 | Approved |
0.7429 | Intermediate Similarity | NPD5377 | Approved |
0.7429 | Intermediate Similarity | NPD5381 | Approved |
0.7426 | Intermediate Similarity | NPD2698 | Approved |
0.7364 | Intermediate Similarity | NPD2700 | Approved |
0.7345 | Intermediate Similarity | NPD4833 | Approved |
0.7345 | Intermediate Similarity | NPD35 | Approved |
0.7034 | Intermediate Similarity | NPD4830 | Approved |
0.7034 | Intermediate Similarity | NPD4832 | Approved |
0.7034 | Intermediate Similarity | NPD4831 | Approved |
0.7009 | Intermediate Similarity | NPD3731 | Phase 3 |
0.6972 | Remote Similarity | NPD881 | Approved |
0.6964 | Remote Similarity | NPD8045 | Clinical (unspecified phase) |
0.6949 | Remote Similarity | NPD3204 | Clinical (unspecified phase) |
0.6916 | Remote Similarity | NPD1447 | Phase 3 |
0.6916 | Remote Similarity | NPD1446 | Phase 3 |
0.681 | Remote Similarity | NPD6941 | Approved |
0.6727 | Remote Similarity | NPD6428 | Approved |
0.6726 | Remote Similarity | NPD7141 | Clinical (unspecified phase) |
0.6726 | Remote Similarity | NPD7139 | Approved |
0.6726 | Remote Similarity | NPD7140 | Approved |
0.6667 | Remote Similarity | NPD8345 | Approved |
0.6667 | Remote Similarity | NPD8346 | Approved |
0.6667 | Remote Similarity | NPD8347 | Approved |
0.661 | Remote Similarity | NPD8087 | Discontinued |
0.6607 | Remote Similarity | NPD2255 | Approved |
0.656 | Remote Similarity | NPD6436 | Phase 3 |
0.6421 | Remote Similarity | NPD9031 | Approved |
0.6421 | Remote Similarity | NPD9032 | Approved |
0.6421 | Remote Similarity | NPD9030 | Approved |
0.6421 | Remote Similarity | NPD9033 | Approved |
0.6356 | Remote Similarity | NPD8307 | Discontinued |
0.6218 | Remote Similarity | NPD8140 | Approved |
0.6182 | Remote Similarity | NPD3716 | Discontinued |
0.6132 | Remote Similarity | NPD883 | Phase 2 |
0.6132 | Remote Similarity | NPD882 | Phase 2 |
0.6111 | Remote Similarity | NPD394 | Phase 3 |
0.6061 | Remote Similarity | NPD9445 | Approved |
0.604 | Remote Similarity | NPD67 | Phase 2 |
0.604 | Remote Similarity | NPD9034 | Approved |
0.5966 | Remote Similarity | NPD8275 | Approved |
0.5966 | Remote Similarity | NPD8276 | Approved |
0.5962 | Remote Similarity | NPD9434 | Approved |
0.5962 | Remote Similarity | NPD9435 | Approved |
0.5954 | Remote Similarity | NPD577 | Phase 3 |
0.5954 | Remote Similarity | NPD591 | Approved |
0.5946 | Remote Similarity | NPD618 | Clinical (unspecified phase) |
0.5882 | Remote Similarity | NPD8086 | Approved |
0.5882 | Remote Similarity | NPD8139 | Approved |
0.5882 | Remote Similarity | NPD8084 | Approved |
0.5882 | Remote Similarity | NPD8138 | Approved |
0.5882 | Remote Similarity | NPD8082 | Approved |
0.5882 | Remote Similarity | NPD8085 | Approved |
0.5882 | Remote Similarity | NPD8083 | Approved |
0.5868 | Remote Similarity | NPD8393 | Approved |
0.5865 | Remote Similarity | NPD372 | Clinical (unspecified phase) |
0.5789 | Remote Similarity | NPD9239 | Approved |
0.5789 | Remote Similarity | NPD9240 | Approved |
0.5785 | Remote Similarity | NPD8081 | Approved |
0.575 | Remote Similarity | NPD8300 | Approved |
0.575 | Remote Similarity | NPD8301 | Approved |
0.5714 | Remote Similarity | NPD6430 | Approved |
0.5714 | Remote Similarity | NPD6429 | Approved |
0.5714 | Remote Similarity | NPD4759 | Clinical (unspecified phase) |
0.567 | Remote Similarity | NPD9026 | Phase 2 |
0.567 | Remote Similarity | NPD9028 | Phase 2 |
0.567 | Remote Similarity | NPD9027 | Phase 3 |
0.567 | Remote Similarity | NPD9029 | Phase 3 |
0.5631 | Remote Similarity | NPD6704 | Discontinued |
0.56 | Remote Similarity | NPD8305 | Approved |
0.56 | Remote Similarity | NPD8306 | Approved |
PubChem CID   | 15541 |
ChEMBL   | CHEMBL1167 |
ZINC   |
Molecular Weight:   | 332.16 |
ALogP:   | -2.8577 |
MLogP:   | 2.01 |
XLogP:   | -1.913 |
# Rotatable Bonds:   | 8 |
Polar Surface Area:   | 129.51 |
# H-Bond Aceptor:   | 9 |
# H-Bond Donor:   | 5 |
# Rings:   | 3 |
# Heavy Atoms:   | 23 |