Natural Product: NPC221148

Natural Product ID:  NPC221148
Common Name:   Spectinomycin
IUPAC Name:  
Synonyms:   Spectinomycin; Trobicin
Molecular Formula:   C14H24N2O7
Standard InCHIKey:  UNFWWIHTNXNPBV-WXKVUWSESA-N
Standard InCHI:  InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1
Canonical SMILES:  CN[C@H]1[C@H](O)[C@H]2O[C@@H]3O[C@H](C)CC(=O)[C@@]3(O[C@@H]2[C@H]([C@H]1O)NC)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   BGC0000715;BGC0000716 ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28993.16 Streptomyces venezuelae sm5 Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO28993 Streptomyces venezuelae Species Streptomycetaceae Bacteria StreptomeDB*
NPO22373 Streptomyces spectabilis Species Streptomycetaceae Bacteria StreptomeDB*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT144 Individual Protein Telomerase reverse transcriptase Homo sapiens Inhibition = 0 % 15177454
NPT2 Others Unspecified Inhibition = 0 % 15177454
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 256 ug/ml 17145801
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC < 0.25 ug/ml 17145801
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 32 ug/ml 17145801
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 128 ug/ml 17145801
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 64 ug/ml 17145801
NPT19 Organism Escherichia coli Escherichia coli MIC = 20 ug/ml 17210778
NPT19 Organism Escherichia coli Escherichia coli MIC > 300 ug/ml 17210778
NPT746 Organism Pasteurella multocida Pasteurella multocida MIC > 8192 ug/ml 17371823
NPT746 Organism Pasteurella multocida Pasteurella multocida MIC = 4096 ug/ml 17371823
NPT746 Organism Pasteurella multocida Pasteurella multocida MIC = 8192 ug/ml 17371823
NPT746 Organism Pasteurella multocida Pasteurella multocida MIC = 16 ug/ml 17371823
NPT19 Organism Escherichia coli Escherichia coli MIC = 16 ug/ml 17438056
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium MIC = 32 ug/ml 17438056
NPT2756 Organism Mycoplasma putrefaciens Mycoplasma putrefaciens MIC50 = 16 ug/ml 17638695
NPT2756 Organism Mycoplasma putrefaciens Mycoplasma putrefaciens MIC90 = 16 ug/ml 17638695
NPT2756 Organism Mycoplasma putrefaciens Mycoplasma putrefaciens MIC = 32 ug/ml 17638695
NPT2756 Organism Mycoplasma putrefaciens Mycoplasma putrefaciens MIC90 = 32 ug/ml 17638695
NPT19 Organism Escherichia coli Escherichia coli MIC > 256 ug/ml 17875999
NPT19 Organism Escherichia coli Escherichia coli MIC = 16 ug/ml 17875999
NPT19 Organism Escherichia coli Escherichia coli MIC90 = 20 ug/ml 19959361
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 128 ug/ml 20188576
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64 ug/ml 20008780
NPT1101 Organism Staphylococcus aureus subsp. aureus RN4220 Staphylococcus aureus subsp. aureus RN4220 MIC = 64 ug/ml 20008780
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae MIC = 8 ug/ml 18663018
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae MIC = 16 ug/ml 18663018
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 64 ug/ml 20498323
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 1024 ug/ml 20498323
NPT2907 Organism Burkholderia pseudomallei Burkholderia pseudomallei MIC = 2048 ug/ml 20498323
NPT19 Organism Escherichia coli Escherichia coli MIC = 8 ug/ml 20547812
NPT19 Organism Escherichia coli Escherichia coli MIC = 256 ug/ml 20547812
NPT2 Others Unspecified MIC = 6 ug/ml 20547812
NPT2 Others Unspecified MIC = 128 ug/ml 20547812
NPT19 Organism Escherichia coli Escherichia coli MIC = 4 ug/ml 20547812
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 256 ug/ml 20547812
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 512 ug/ml 20547812
NPT720 Organism Enterobacter aerogenes Enterobacter aerogenes MIC = 8 ug/ml 20547812
NPT720 Organism Enterobacter aerogenes Enterobacter aerogenes MIC = 128 ug/ml 20547812
NPT1101 Organism Staphylococcus aureus subsp. aureus RN4220 Staphylococcus aureus subsp. aureus RN4220 MIC = 64 ug/ml 18519725
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 64 ug/ml 18519725
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium MIC > 256 ug/ml 19470505
NPT19 Organism Escherichia coli Escherichia coli MIC = 25 ug/ml 20876376
NPT19 Organism Escherichia coli Escherichia coli MIC = 12.5 ug/ml 20876376
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae Activity = 100 % 21098249
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae MIC50 <= 32 ug/ml 21098249
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae MIC90 <= 32 ug/ml 21098249
NPT1522 Organism Neisseria gonorrhoeae Neisseria gonorrhoeae Activity = 0 % 21098249
NPT317 Uncleic Acid Nucleic Acid Kd > 100000 nM 22257890
NPT1107 Organism Mycobacterium smegmatis str. MC2 155 Mycobacterium smegmatis str. MC2 155 MIC = 32 ug/ml 23205944
NPT2759 Organism Streptomyces acidiscabies Streptomyces acidiscabies Activity = 59 % 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei Activity = 1.1 % 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei Activity = 0.8 % 10.1584/jpestics.28.183
NPT2759 Organism Streptomyces acidiscabies Streptomyces acidiscabies Activity = 8.31 % 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei Activity = 5.01 % 10.1584/jpestics.28.183
NPT2758 Organism Streptomyces alboniger Streptomyces alboniger IZ = 35 mm 10.1584/jpestics.28.183
NPT2759 Organism Streptomyces acidiscabies Streptomyces acidiscabies IZ = 20 mm 10.1584/jpestics.28.183
NPT2759 Organism Streptomyces acidiscabies Streptomyces acidiscabies IZ = 31 mm 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei IZ = 27 mm 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei IZ = 19 mm 10.1584/jpestics.28.183
NPT2760 Organism Streptomyces scabiei Streptomyces scabiei IZ = 11 mm 10.1584/jpestics.28.183
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency 3548.1 nM PubChem BioAssay data set
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 84.12 nM 10.1039/C3MD00387F
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 84.12 nM 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 5.25 nM 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis FC = 16 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis FC = 2 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis FC = 4 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 10.52 nM 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 42.05 nM 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC99 = 21.04 nM 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis Ratio = 0.062 24997576
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis Ratio = 0.5 24997576

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC221148 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7981 Intermediate Similarity NPC56298
0.7981 Intermediate Similarity NPC471628
0.7981 Intermediate Similarity NPC315036
0.7895 Intermediate Similarity NPC315969
0.7845 Intermediate Similarity NPC94319
0.7812 Intermediate Similarity NPC263058
0.7778 Intermediate Similarity NPC477060
0.7778 Intermediate Similarity NPC123746
0.7778 Intermediate Similarity NPC43850
0.7778 Intermediate Similarity NPC314007
0.7778 Intermediate Similarity NPC314408
0.7624 Intermediate Similarity NPC176381
0.7624 Intermediate Similarity NPC195969
0.75 Intermediate Similarity NPC313552
0.7429 Intermediate Similarity NPC330590
0.7426 Intermediate Similarity NPC214376
0.7404 Intermediate Similarity NPC315334
0.7345 Intermediate Similarity NPC121479
0.7345 Intermediate Similarity NPC57436
0.7143 Intermediate Similarity NPC70574
0.7041 Intermediate Similarity NPC98750
0.7009 Intermediate Similarity NPC241597
0.7 Intermediate Similarity NPC36927
0.7 Intermediate Similarity NPC271772
0.697 Remote Similarity NPC318258
0.6827 Remote Similarity NPC306838
0.6822 Remote Similarity NPC328646
0.68 Remote Similarity NPC83248
0.68 Remote Similarity NPC100204
0.6765 Remote Similarity NPC165119
0.6535 Remote Similarity NPC316807
0.6535 Remote Similarity NPC150557
0.6476 Remote Similarity NPC192025
0.6476 Remote Similarity NPC125253
0.6476 Remote Similarity NPC253975
0.6421 Remote Similarity NPC322801
0.6421 Remote Similarity NPC291650
0.6421 Remote Similarity NPC129100
0.6408 Remote Similarity NPC471420
0.6348 Remote Similarity NPC188453
0.6348 Remote Similarity NPC42320
0.6296 Remote Similarity NPC470282
0.6262 Remote Similarity NPC83839
0.6172 Remote Similarity NPC139857
0.6083 Remote Similarity NPC137453
0.6077 Remote Similarity NPC75839
0.6077 Remote Similarity NPC68327
0.6071 Remote Similarity NPC208537
0.6071 Remote Similarity NPC270005
0.6061 Remote Similarity NPC223174
0.6061 Remote Similarity NPC327486
0.6061 Remote Similarity NPC327753
0.6047 Remote Similarity NPC20035
0.5962 Remote Similarity NPC314968
0.5962 Remote Similarity NPC314772
0.5946 Remote Similarity NPC292345
0.5882 Remote Similarity NPC227622
0.5827 Remote Similarity NPC313813
0.5826 Remote Similarity NPC470283
0.5816 Remote Similarity NPC315980
0.5804 Remote Similarity NPC470284
0.58 Remote Similarity NPC268922
0.5769 Remote Similarity NPC305261
0.5714 Remote Similarity NPC314306
0.57 Remote Similarity NPC471418
0.5686 Remote Similarity NPC476695
0.5686 Remote Similarity NPC476694
0.5686 Remote Similarity NPC476696
0.567 Remote Similarity NPC22774
0.567 Remote Similarity NPC150680
0.567 Remote Similarity NPC306462
0.567 Remote Similarity NPC218150
0.567 Remote Similarity NPC69669
0.567 Remote Similarity NPC2432
0.5657 Remote Similarity NPC303798
0.5657 Remote Similarity NPC286851
0.5656 Remote Similarity NPC189854
0.5656 Remote Similarity NPC92874
0.5656 Remote Similarity NPC62845
0.5656 Remote Similarity NPC166242
0.5656 Remote Similarity NPC322449
0.5625 Remote Similarity NPC259586
0.562 Remote Similarity NPC251884
0.561 Remote Similarity NPC10897
0.561 Remote Similarity NPC325900

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC221148 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD1449 Approved
1.0 High Similarity NPD1450 Approved
0.9314 High Similarity NPD2690 Discontinued
0.8137 Intermediate Similarity NPD4282 Approved
0.7981 Intermediate Similarity NPD4835 Approved
0.7981 Intermediate Similarity NPD4836 Approved
0.7981 Intermediate Similarity NPD4837 Approved
0.7981 Intermediate Similarity NPD4838 Approved
0.7857 Intermediate Similarity NPD3200 Clinical (unspecified phase)
0.7845 Intermediate Similarity NPD4827 Approved
0.7845 Intermediate Similarity NPD4828 Approved
0.7845 Intermediate Similarity NPD4826 Approved
0.7778 Intermediate Similarity NPD3202 Approved
0.7778 Intermediate Similarity NPD3203 Approved
0.7778 Intermediate Similarity NPD3209 Approved
0.7778 Intermediate Similarity NPD3207 Approved
0.7778 Intermediate Similarity NPD3208 Approved
0.7778 Intermediate Similarity NPD3201 Approved
0.7624 Intermediate Similarity NPD5794 Approved
0.7624 Intermediate Similarity NPD5795 Approved
0.7624 Intermediate Similarity NPD5796 Clinical (unspecified phase)
0.7624 Intermediate Similarity NPD5798 Approved
0.7624 Intermediate Similarity NPD5797 Approved
0.7615 Intermediate Similarity NPD5376 Approved
0.7429 Intermediate Similarity NPD5378 Approved
0.7429 Intermediate Similarity NPD5377 Approved
0.7429 Intermediate Similarity NPD5381 Approved
0.7426 Intermediate Similarity NPD2698 Approved
0.7364 Intermediate Similarity NPD2700 Approved
0.7345 Intermediate Similarity NPD4833 Approved
0.7345 Intermediate Similarity NPD35 Approved
0.7034 Intermediate Similarity NPD4830 Approved
0.7034 Intermediate Similarity NPD4832 Approved
0.7034 Intermediate Similarity NPD4831 Approved
0.7009 Intermediate Similarity NPD3731 Phase 3
0.6972 Remote Similarity NPD881 Approved
0.6964 Remote Similarity NPD8045 Clinical (unspecified phase)
0.6949 Remote Similarity NPD3204 Clinical (unspecified phase)
0.6916 Remote Similarity NPD1447 Phase 3
0.6916 Remote Similarity NPD1446 Phase 3
0.681 Remote Similarity NPD6941 Approved
0.6727 Remote Similarity NPD6428 Approved
0.6726 Remote Similarity NPD7141 Clinical (unspecified phase)
0.6726 Remote Similarity NPD7139 Approved
0.6726 Remote Similarity NPD7140 Approved
0.6667 Remote Similarity NPD8345 Approved
0.6667 Remote Similarity NPD8346 Approved
0.6667 Remote Similarity NPD8347 Approved
0.661 Remote Similarity NPD8087 Discontinued
0.6607 Remote Similarity NPD2255 Approved
0.656 Remote Similarity NPD6436 Phase 3
0.6421 Remote Similarity NPD9031 Approved
0.6421 Remote Similarity NPD9032 Approved
0.6421 Remote Similarity NPD9030 Approved
0.6421 Remote Similarity NPD9033 Approved
0.6356 Remote Similarity NPD8307 Discontinued
0.6218 Remote Similarity NPD8140 Approved
0.6182 Remote Similarity NPD3716 Discontinued
0.6132 Remote Similarity NPD883 Phase 2
0.6132 Remote Similarity NPD882 Phase 2
0.6111 Remote Similarity NPD394 Phase 3
0.6061 Remote Similarity NPD9445 Approved
0.604 Remote Similarity NPD67 Phase 2
0.604 Remote Similarity NPD9034 Approved
0.5966 Remote Similarity NPD8275 Approved
0.5966 Remote Similarity NPD8276 Approved
0.5962 Remote Similarity NPD9434 Approved
0.5962 Remote Similarity NPD9435 Approved
0.5954 Remote Similarity NPD577 Phase 3
0.5954 Remote Similarity NPD591 Approved
0.5946 Remote Similarity NPD618 Clinical (unspecified phase)
0.5882 Remote Similarity NPD8086 Approved
0.5882 Remote Similarity NPD8139 Approved
0.5882 Remote Similarity NPD8084 Approved
0.5882 Remote Similarity NPD8138 Approved
0.5882 Remote Similarity NPD8082 Approved
0.5882 Remote Similarity NPD8085 Approved
0.5882 Remote Similarity NPD8083 Approved
0.5868 Remote Similarity NPD8393 Approved
0.5865 Remote Similarity NPD372 Clinical (unspecified phase)
0.5789 Remote Similarity NPD9239 Approved
0.5789 Remote Similarity NPD9240 Approved
0.5785 Remote Similarity NPD8081 Approved
0.575 Remote Similarity NPD8300 Approved
0.575 Remote Similarity NPD8301 Approved
0.5714 Remote Similarity NPD6430 Approved
0.5714 Remote Similarity NPD6429 Approved
0.5714 Remote Similarity NPD4759 Clinical (unspecified phase)
0.567 Remote Similarity NPD9026 Phase 2
0.567 Remote Similarity NPD9028 Phase 2
0.567 Remote Similarity NPD9027 Phase 3
0.567 Remote Similarity NPD9029 Phase 3
0.5631 Remote Similarity NPD6704 Discontinued
0.56 Remote Similarity NPD8305 Approved
0.56 Remote Similarity NPD8306 Approved

Structure

External Identifiers

PubChem CID   15541
ChEMBL   CHEMBL1167
ZINC  

Physicochemical Properties

Molecular Weight:  332.16
ALogP:  -2.8577
MLogP:  2.01
XLogP:  -1.913
# Rotatable Bonds:  8
Polar Surface Area:  129.51
# H-Bond Aceptor:  9
# H-Bond Donor:  5
# Rings:  3
# Heavy Atoms:  23

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