Structure

Physi-Chem Properties

Molecular Weight:  454.31
Volume:  510.833
LogP:  6.066
LogD:  3.977
LogS:  -3.109
# Rotatable Bonds:  11
TPSA:  57.56
# H-Bond Aceptor:  4
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.229
Synthetic Accessibility Score:  2.676
Fsp3:  0.4
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.105
MDCK Permeability:  1.38023078761762e-05
Pgp-inhibitor:  0.926
Pgp-substrate:  0.704
Human Intestinal Absorption (HIA):  0.782
20% Bioavailability (F20%):  0.718
30% Bioavailability (F30%):  0.997

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.804
Plasma Protein Binding (PPB):  94.6548080444336%
Volume Distribution (VD):  1.616
Pgp-substrate:  2.1395492553710938%

ADMET: Metabolism

CYP1A2-inhibitor:  0.593
CYP1A2-substrate:  0.848
CYP2C19-inhibitor:  0.642
CYP2C19-substrate:  0.445
CYP2C9-inhibitor:  0.136
CYP2C9-substrate:  0.083
CYP2D6-inhibitor:  0.995
CYP2D6-substrate:  0.918
CYP3A4-inhibitor:  0.551
CYP3A4-substrate:  0.133

ADMET: Excretion

Clearance (CL):  3.947
Half-life (T1/2):  0.058

ADMET: Toxicity

hERG Blockers:  0.033
Human Hepatotoxicity (H-HT):  0.977
Drug-inuced Liver Injury (DILI):  0.881
AMES Toxicity:  0.964
Rat Oral Acute Toxicity:  0.082
Maximum Recommended Daily Dose:  0.96
Skin Sensitization:  0.529
Carcinogencity:  0.913
Eye Corrosion:  0.003
Eye Irritation:  0.288
Respiratory Toxicity:  0.132

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC313449

Natural Product ID:  NPC313449
Common Name*:   Dequalinium
IUPAC Name:   1-[10-(4-amino-2-methylquinolin-1-ium-1-yl)decyl]-2-methylquinolin-1-ium-4-amine
Synonyms:   Dequalinium
Standard InCHIKey:  PCSWXVJAIHCTMO-UHFFFAOYSA-P
Standard InCHI:  InChI=1S/C30H38N4/c1-23-21-27(31)25-15-9-11-17-29(25)33(23)19-13-7-5-3-4-6-8-14-20-34-24(2)22-28(32)26-16-10-12-18-30(26)34/h9-12,15-18,21-22,31-32H,3-8,13-14,19-20H2,1-2H3/p+2
SMILES:  CC1=[N+](C2=CC=CC=C2C(=C1)N)CCCCCCCCCC[N+]3=C(C=C(C4=CC=CC=C43)N)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL333826
PubChem CID:   2993
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0001253] Quinolines and derivatives
        • [CHEMONTID:0000053] Aminoquinolines and derivatives
          • [CHEMONTID:0004537] 4-aminoquinolines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO20130 Decodon verticillatus Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2646 Moschus moschiferus Species Moschidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12246 Moschus chrysogaster Species Moschidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO463 Moschus berezovskii Species Moschidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20130 Decodon verticillatus Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO463 Moschus berezovskii Species Moschidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2646 Moschus moschiferus Species Moschidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20130 Decodon verticillatus Species Lythraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20130 Decodon verticillatus Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2646 Moschus moschiferus Species Moschidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4593 Lagerstroemia indica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO463 Moschus berezovskii Species Moschidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT483 Individual Protein Prelamin-A/C Homo sapiens Potency = 794.3 nM PMID[507118]
NPT47 Individual Protein ATP-dependent DNA helicase Q1 Homo sapiens Potency = 39810.7 nM PMID[507119]
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 19952.6 nM PMID[507120]
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 31622.8 nM PMID[507119]
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 15848.9 nM PMID[507118]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 35481.3 nM PMID[507119]
NPT1197 Individual Protein Huntingtin Homo sapiens Potency = 7943.3 nM PMID[507118]
NPT537 Individual Protein Ras-related protein Rab-9A Homo sapiens Potency = 158489.3 nM PMID[507121]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 44668.4 nM PMID[507119]
NPT210 Individual Protein Thyroid stimulating hormone receptor Homo sapiens Potency = 7943.3 nM PMID[507118]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 22387.2 nM PMID[507118]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 3162.3 nM PMID[507119]
NPT531 Individual Protein Nuclear receptor ROR-gamma Mus musculus Potency = 35481.3 nM PMID[507119]
NPT211 Individual Protein Hypoxia-inducible factor 1 alpha Homo sapiens Potency = 1995.3 nM PMID[507118]
NPT211 Individual Protein Hypoxia-inducible factor 1 alpha Homo sapiens Potency = 10000.0 nM PMID[507120]
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 4466.8 nM PMID[507119]
NPT583 Individual Protein Inositol monophosphatase 1 Rattus norvegicus Potency = 10000.0 nM PMID[507119]
NPT538 Individual Protein Niemann-Pick C1 protein Homo sapiens Potency = 183563.5 nM PMID[507121]
NPT531 Individual Protein Nuclear receptor ROR-gamma Mus musculus Potency = 2238.7 nM PMID[507119]
NPT539 Individual Protein Cellular tumor antigen p53 Homo sapiens Potency = 31622.8 nM PMID[507119]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 1584.9 nM PMID[507119]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 6309.6 nM PMID[507118]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens Potency = 10000.0 nM PMID[507118]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens Potency = 31622.8 nM PMID[507120]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens Potency = 15848.9 nM PMID[507119]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 3162.3 nM PMID[507120]
NPT47 Individual Protein ATP-dependent DNA helicase Q1 Homo sapiens Potency = 14125.4 nM PMID[507119]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 8196.1 nM PMID[507121]
NPT152 Individual Protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 20596.2 nM PMID[507121]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Potency n.a. 12589.3 nM PMID[507121]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 29934.9 nM PMID[507121]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 7943.3 nM PMID[507118]
NPT62 Individual Protein 6-phospho-1-fructokinase Trypanosoma brucei Potency n.a. 9528.3 nM PMID[507121]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 44668.4 nM PMID[507121]
NPT1139 Individual Protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 5011.9 nM PMID[507118]
NPT1139 Individual Protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 1584.9 nM PMID[507119]
NPT1139 Individual Protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 5011.9 nM PMID[507120]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 32629.4 nM PMID[507121]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens AC50 = 31622.78 nM PMID[507120]
NPT208 Individual Protein Cytochrome P450 1A2 Homo sapiens AC50 = 10000.0 nM PMID[507118]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens AC50 = 1584.89 nM PMID[507119]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens AC50 = 10000.0 nM PMID[507118]
NPT208 Individual Protein Cytochrome P450 1A2 Homo sapiens AC50 = 15848.93 nM PMID[507119]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens AC50 = 3162.28 nM PMID[507120]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens AC50 = 15848.93 nM PMID[507119]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens AC50 = 6309.57 nM PMID[507118]
NPT478 Individual Protein Ataxin-2 Homo sapiens Potency n.a. 15848.9 nM PMID[507121]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 26679.5 nM PMID[507121]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 3548.1 nM PMID[507122]
NPT71 Cell Line HEK293 Homo sapiens Potency n.a. 18348.9 nM PMID[507121]
NPT519 Cell Line SH-SY5Y Homo sapiens Potency n.a. 22387.2 nM PMID[507121]
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 35481.3 nM PMID[507118]
NPT445 Individual Protein Peripheral myelin protein 22 Rattus norvegicus Potency n.a. 3463.7 nM PMID[507118]
NPT478 Individual Protein Ataxin-2 Homo sapiens Potency n.a. 22387.2 nM PMID[507121]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 9441.1 nM PMID[507122]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 7499.3 nM PMID[507122]
NPT104 Individual Protein Cerebroside-sulfatase Homo sapiens Potency n.a. 5358.2 nM PMID[507121]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 39810.7 nM PMID[507119]
NPT858 Cell Line LNCaP Homo sapiens IC50 = 4.94 ug.mL-1 PMID[507124]
NPT2 Others Unspecified Potency = 22387.2 nM PMID[507119]
NPT2 Others Unspecified Potency = 10000.0 nM PMID[507118]
NPT2 Others Unspecified Potency = 12589.3 nM PMID[507119]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae Potency = 2592.9 nM PMID[507121]
NPT93 Individual Protein Survival motor neuron protein Homo sapiens Potency = 12589.3 nM PMID[507118]
NPT940 Individual Protein Serine/threonine-protein kinase mTOR Homo sapiens Potency = 18492.7 nM PMID[507121]
NPT791 Individual Protein Cruzipain Trypanosoma cruzi Potency = 25118.9 nM PMID[507119]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 39810.7 nM PMID[507119]
NPT792 Individual Protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 39810.7 nM PMID[507120]
NPT792 Individual Protein Arachidonate 15-lipoxygenase Homo sapiens Potency = 19952.6 nM PMID[507119]
NPT940 Individual Protein Serine/threonine-protein kinase mTOR Homo sapiens Potency = 7362.1 nM PMID[507121]
NPT791 Individual Protein Cruzipain Trypanosoma cruzi Potency = 12589.3 nM PMID[507119]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 39810.7 nM PMID[507119]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 12589.3 nM PMID[507118]
NPT95 Individual Protein Muscarinic acetylcholine receptor M1 Rattus norvegicus Potency = 1778.3 nM PMID[507120]
NPT96 Individual Protein Thrombopoietin Homo sapiens Potency = 5011.9 nM PMID[507120]
NPT95 Individual Protein Muscarinic acetylcholine receptor M1 Rattus norvegicus Potency = 2238.7 nM PMID[507120]
NPT2 Others Unspecified Potency = 15848.9 nM PMID[507118]
NPT800 Individual Protein M-phase phosphoprotein 8 Homo sapiens Potency n.a. 37685.8 nM PMID[507121]
NPT803 Individual Protein Flap endonuclease 1 Homo sapiens Potency n.a. 21192.3 nM PMID[507121]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 891.3 nM PMID[507121]
NPT698 Individual Protein Regulator of G-protein signaling 4 Homo sapiens Potency n.a. 23778.1 nM PMID[507121]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 181.1 nM PMID[507118]
NPT2 Others Unspecified Potency n.a. 9196.2 nM PMID[507119]
NPT2 Others Unspecified Potency n.a. 9196.2 nM PMID[507121]
NPT2 Others Unspecified Potency n.a. 9196.2 nM PMID[507118]
NPT2 Others Unspecified Potency n.a. 9196.2 nM PMID[507123]
NPT2 Others Unspecified Potency n.a. 9196.2 nM PMID[507120]
NPT2 Others Unspecified Potency n.a. 15471.9 nM PMID[507118]
NPT920 Individual Protein Alpha-synuclein Homo sapiens Potency n.a. 23109.3 nM PMID[507121]
NPT2 Others Unspecified Potency n.a. 28183.8 nM PMID[507122]
NPT78 Individual Protein Beta amyloid A4 protein Homo sapiens Potency n.a. 16360.1 nM PMID[507121]
NPT2 Others Unspecified Potency n.a. 31622.8 nM PMID[507122]
NPT2 Others Unspecified Potency n.a. 3981.1 nM PMID[507121]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 24.6 ug.mL-1 PMID[507124]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 10.33 ug.mL-1 PMID[507124]
NPT2 Others Unspecified IC50 n.a. 10000.0 nM PMID[507125]
NPT2 Others Unspecified IC50 n.a. 20000.0 nM PMID[507125]
NPT2 Others Unspecified IC50 = 5717.2 nM PMID[507125]
NPT2 Others Unspecified IC50 = 3833.8 nM PMID[507125]
NPT2 Others Unspecified IC50 = 1292.6 nM PMID[507125]
NPT2 Others Unspecified IC50 = 2454.1 nM PMID[507125]
NPT2 Others Unspecified IC50 = 15870.1 nM PMID[507125]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Hit score = -0.1244 n.a. PMID[507126]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 25.14 % PMID[507127]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.25 % PMID[507128]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC313449 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8632 High Similarity NPC192209
0.8609 High Similarity NPC296163
0.8609 High Similarity NPC187036
0.84 Intermediate Similarity NPC9856
0.8174 Intermediate Similarity NPC302790
0.8151 Intermediate Similarity NPC288232
0.7965 Intermediate Similarity NPC291610
0.7833 Intermediate Similarity NPC314141
0.7538 Intermediate Similarity NPC476950
0.748 Intermediate Similarity NPC475915
0.7462 Intermediate Similarity NPC252794
0.7417 Intermediate Similarity NPC164802
0.7381 Intermediate Similarity NPC264580
0.7333 Intermediate Similarity NPC79618
0.7333 Intermediate Similarity NPC184437
0.7324 Intermediate Similarity NPC469740
0.7313 Intermediate Similarity NPC53044
0.7313 Intermediate Similarity NPC22079
0.7246 Intermediate Similarity NPC314102
0.7246 Intermediate Similarity NPC251722
0.7244 Intermediate Similarity NPC81561
0.7234 Intermediate Similarity NPC136002
0.7234 Intermediate Similarity NPC20144
0.723 Intermediate Similarity NPC475990
0.7188 Intermediate Similarity NPC162689
0.7188 Intermediate Similarity NPC54102
0.7165 Intermediate Similarity NPC148140
0.7143 Intermediate Similarity NPC471574
0.7143 Intermediate Similarity NPC145754
0.7133 Intermediate Similarity NPC469735
0.7123 Intermediate Similarity NPC117032
0.7122 Intermediate Similarity NPC125746
0.7121 Intermediate Similarity NPC122718
0.7101 Intermediate Similarity NPC198988
0.7092 Intermediate Similarity NPC59084
0.7092 Intermediate Similarity NPC2949
0.7092 Intermediate Similarity NPC238499
0.7077 Intermediate Similarity NPC257490
0.7059 Intermediate Similarity NPC476687
0.7059 Intermediate Similarity NPC476685
0.7059 Intermediate Similarity NPC476689
0.7055 Intermediate Similarity NPC206592
0.7049 Intermediate Similarity NPC434
0.7042 Intermediate Similarity NPC63157
0.7042 Intermediate Similarity NPC473868
0.7029 Intermediate Similarity NPC300299
0.7021 Intermediate Similarity NPC88097
0.7014 Intermediate Similarity NPC469525
0.7007 Intermediate Similarity NPC475450
0.7 Intermediate Similarity NPC112373
0.7 Intermediate Similarity NPC258531
0.7 Intermediate Similarity NPC161956
0.7 Intermediate Similarity NPC221786
0.7 Intermediate Similarity NPC474880
0.6978 Remote Similarity NPC325599
0.6972 Remote Similarity NPC469768
0.6972 Remote Similarity NPC469784
0.6972 Remote Similarity NPC469767
0.6972 Remote Similarity NPC469779
0.6972 Remote Similarity NPC469780
0.6972 Remote Similarity NPC469783
0.6972 Remote Similarity NPC469761
0.697 Remote Similarity NPC41174
0.6954 Remote Similarity NPC229173
0.6947 Remote Similarity NPC215519
0.6939 Remote Similarity NPC33421
0.693 Remote Similarity NPC476160
0.6929 Remote Similarity NPC325252
0.6923 Remote Similarity NPC177684
0.6923 Remote Similarity NPC291962
0.6923 Remote Similarity NPC469766
0.6918 Remote Similarity NPC21605
0.6917 Remote Similarity NPC46358
0.6901 Remote Similarity NPC104483
0.6901 Remote Similarity NPC73767
0.6901 Remote Similarity NPC301760
0.6889 Remote Similarity NPC250361
0.6889 Remote Similarity NPC478079
0.6889 Remote Similarity NPC469949
0.6887 Remote Similarity NPC318065
0.6887 Remote Similarity NPC206819
0.6879 Remote Similarity NPC150259
0.6861 Remote Similarity NPC473587
0.6835 Remote Similarity NPC473930
0.6818 Remote Similarity NPC103292
0.6812 Remote Similarity NPC475428
0.681 Remote Similarity NPC108800
0.6809 Remote Similarity NPC218268
0.6806 Remote Similarity NPC277157
0.6788 Remote Similarity NPC473762
0.6786 Remote Similarity NPC229477
0.6783 Remote Similarity NPC110126
0.6783 Remote Similarity NPC78154
0.6783 Remote Similarity NPC2823
0.6783 Remote Similarity NPC191444
0.6763 Remote Similarity NPC179365
0.6761 Remote Similarity NPC84911
0.6757 Remote Similarity NPC37548
0.6755 Remote Similarity NPC51054
0.6742 Remote Similarity NPC279385
0.6742 Remote Similarity NPC179605
0.6741 Remote Similarity NPC476322
0.6735 Remote Similarity NPC143872
0.6733 Remote Similarity NPC281094
0.6724 Remote Similarity NPC470926
0.6721 Remote Similarity NPC474430
0.6713 Remote Similarity NPC130251
0.6712 Remote Similarity NPC242556
0.6711 Remote Similarity NPC53947
0.6696 Remote Similarity NPC176858
0.6696 Remote Similarity NPC169016
0.6692 Remote Similarity NPC313673
0.6691 Remote Similarity NPC282398
0.669 Remote Similarity NPC96102
0.669 Remote Similarity NPC29886
0.669 Remote Similarity NPC261195
0.6689 Remote Similarity NPC476219
0.6689 Remote Similarity NPC477134
0.6688 Remote Similarity NPC474897
0.6667 Remote Similarity NPC226143
0.6667 Remote Similarity NPC204141
0.6667 Remote Similarity NPC56765
0.6667 Remote Similarity NPC470440
0.6667 Remote Similarity NPC262295
0.6644 Remote Similarity NPC187951
0.6643 Remote Similarity NPC101165
0.6643 Remote Similarity NPC82295
0.6643 Remote Similarity NPC105127
0.6642 Remote Similarity NPC476140
0.6641 Remote Similarity NPC476566
0.6622 Remote Similarity NPC288838
0.6621 Remote Similarity NPC115611
0.6619 Remote Similarity NPC476131
0.6617 Remote Similarity NPC317564
0.6609 Remote Similarity NPC111233
0.6607 Remote Similarity NPC134825
0.6601 Remote Similarity NPC286427
0.66 Remote Similarity NPC24678
0.66 Remote Similarity NPC105818
0.66 Remote Similarity NPC40070
0.6597 Remote Similarity NPC169433
0.6593 Remote Similarity NPC328683
0.6593 Remote Similarity NPC283130
0.6591 Remote Similarity NPC240136
0.6591 Remote Similarity NPC471402
0.6591 Remote Similarity NPC297486
0.6587 Remote Similarity NPC77294
0.6582 Remote Similarity NPC194411
0.6581 Remote Similarity NPC476231
0.6579 Remote Similarity NPC38736
0.6579 Remote Similarity NPC470507
0.6579 Remote Similarity NPC476297
0.6577 Remote Similarity NPC109787
0.6571 Remote Similarity NPC69914
0.656 Remote Similarity NPC473498
0.6558 Remote Similarity NPC41257
0.6556 Remote Similarity NPC470233
0.6555 Remote Similarity NPC329430
0.6554 Remote Similarity NPC314372
0.6552 Remote Similarity NPC315348
0.6552 Remote Similarity NPC32002
0.6552 Remote Similarity NPC316811
0.6552 Remote Similarity NPC312092
0.6547 Remote Similarity NPC472245
0.6547 Remote Similarity NPC473417
0.6547 Remote Similarity NPC89490
0.6544 Remote Similarity NPC290094
0.6541 Remote Similarity NPC91958
0.6538 Remote Similarity NPC205652
0.6536 Remote Similarity NPC285469
0.6536 Remote Similarity NPC476464
0.6533 Remote Similarity NPC2272
0.6533 Remote Similarity NPC124005
0.6532 Remote Similarity NPC275467
0.6531 Remote Similarity NPC190296
0.6528 Remote Similarity NPC83214
0.6519 Remote Similarity NPC182570
0.6519 Remote Similarity NPC48564
0.6519 Remote Similarity NPC39818
0.6519 Remote Similarity NPC265605
0.6513 Remote Similarity NPC469763
0.6513 Remote Similarity NPC232798
0.6513 Remote Similarity NPC73952
0.6513 Remote Similarity NPC25008
0.6513 Remote Similarity NPC259644
0.6513 Remote Similarity NPC469786
0.6513 Remote Similarity NPC325903
0.6513 Remote Similarity NPC469765
0.6513 Remote Similarity NPC469760
0.651 Remote Similarity NPC254798
0.651 Remote Similarity NPC129042
0.6507 Remote Similarity NPC284635
0.6507 Remote Similarity NPC279081
0.6504 Remote Similarity NPC239854
0.65 Remote Similarity NPC475090
0.65 Remote Similarity NPC329896
0.65 Remote Similarity NPC475105
0.6494 Remote Similarity NPC216643
0.6494 Remote Similarity NPC193740
0.6494 Remote Similarity NPC104345

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC313449 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD7481 Approved
1.0 High Similarity NPD7480 Approved
0.8319 Intermediate Similarity NPD993 Approved
0.8319 Intermediate Similarity NPD990 Approved
0.8246 Intermediate Similarity NPD6300 Approved
0.8246 Intermediate Similarity NPD6299 Approved
0.8016 Intermediate Similarity NPD2840 Approved
0.8 Intermediate Similarity NPD3545 Approved
0.8 Intermediate Similarity NPD3546 Approved
0.7966 Intermediate Similarity NPD2999 Approved
0.7966 Intermediate Similarity NPD3001 Approved
0.7949 Intermediate Similarity NPD4116 Approved
0.7931 Intermediate Similarity NPD4115 Approved
0.7931 Intermediate Similarity NPD4114 Approved
0.7797 Intermediate Similarity NPD7633 Discontinued
0.7794 Intermediate Similarity NPD6301 Phase 2
0.7686 Intermediate Similarity NPD2913 Approved
0.7686 Intermediate Similarity NPD2914 Approved
0.7667 Intermediate Similarity NPD2039 Approved
0.7667 Intermediate Similarity NPD2038 Approved
0.7656 Intermediate Similarity NPD4985 Clinical (unspecified phase)
0.7627 Intermediate Similarity NPD5253 Approved
0.7623 Intermediate Similarity NPD5631 Phase 3
0.7519 Intermediate Similarity NPD1937 Approved
0.75 Intermediate Similarity NPD2467 Approved
0.75 Intermediate Similarity NPD2463 Approved
0.75 Intermediate Similarity NPD4735 Approved
0.75 Intermediate Similarity NPD4734 Approved
0.75 Intermediate Similarity NPD2464 Approved
0.7426 Intermediate Similarity NPD3864 Clinical (unspecified phase)
0.7424 Intermediate Similarity NPD4019 Clinical (unspecified phase)
0.7417 Intermediate Similarity NPD477 Phase 1
0.7407 Intermediate Similarity NPD3385 Approved
0.7398 Intermediate Similarity NPD5180 Approved
0.7398 Intermediate Similarity NPD5179 Approved
0.7398 Intermediate Similarity NPD5181 Approved
0.7368 Intermediate Similarity NPD4866 Approved
0.7368 Intermediate Similarity NPD4867 Approved
0.7368 Intermediate Similarity NPD3841 Phase 3
0.7339 Intermediate Similarity NPD5629 Discontinued
0.7308 Intermediate Similarity NPD2940 Approved
0.7308 Intermediate Similarity NPD2938 Approved
0.7273 Intermediate Similarity NPD1721 Clinical (unspecified phase)
0.7239 Intermediate Similarity NPD3654 Approved
0.7239 Intermediate Similarity NPD1001 Discontinued
0.7234 Intermediate Similarity NPD4637 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD4047 Discontinued
0.7227 Intermediate Similarity NPD1728 Clinical (unspecified phase)
0.7214 Intermediate Similarity NPD3943 Clinical (unspecified phase)
0.7213 Intermediate Similarity NPD3548 Approved
0.7213 Intermediate Similarity NPD1539 Approved
0.7213 Intermediate Similarity NPD1108 Approved
0.7213 Intermediate Similarity NPD1107 Approved
0.7197 Intermediate Similarity NPD6900 Discontinued
0.7188 Intermediate Similarity NPD3499 Approved
0.7188 Intermediate Similarity NPD3498 Approved
0.7188 Intermediate Similarity NPD1306 Clinical (unspecified phase)
0.7174 Intermediate Similarity NPD1255 Approved
0.7174 Intermediate Similarity NPD1256 Approved
0.7174 Intermediate Similarity NPD1254 Approved
0.7174 Intermediate Similarity NPD1253 Approved
0.7133 Intermediate Similarity NPD5839 Clinical (unspecified phase)
0.7132 Intermediate Similarity NPD2340 Discontinued
0.7123 Intermediate Similarity NPD3248 Phase 1
0.7122 Intermediate Similarity NPD45 Approved
0.7122 Intermediate Similarity NPD6554 Approved
0.7113 Intermediate Similarity NPD6506 Clinical (unspecified phase)
0.7109 Intermediate Similarity NPD5657 Phase 3
0.7109 Intermediate Similarity NPD1668 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD1064 Approved
0.7107 Intermediate Similarity NPD1065 Approved
0.7103 Intermediate Similarity NPD4374 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD5787 Discontinued
0.709 Intermediate Similarity NPD2118 Approved
0.709 Intermediate Similarity NPD2119 Approved
0.7087 Intermediate Similarity NPD6070 Approved
0.7087 Intermediate Similarity NPD6069 Approved
0.7063 Intermediate Similarity NPD5254 Discontinued
0.7059 Intermediate Similarity NPD6822 Approved
0.7059 Intermediate Similarity NPD6820 Approved
0.7049 Intermediate Similarity NPD2243 Clinical (unspecified phase)
0.7029 Intermediate Similarity NPD6821 Approved
0.7023 Intermediate Similarity NPD4775 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD2538 Approved
0.7 Intermediate Similarity NPD2539 Approved
0.7 Intermediate Similarity NPD6892 Discontinued
0.7 Intermediate Similarity NPD2244 Clinical (unspecified phase)
0.6993 Remote Similarity NPD2866 Approved
0.6993 Remote Similarity NPD7099 Approved
0.6992 Remote Similarity NPD2679 Approved
0.6992 Remote Similarity NPD8128 Discontinued
0.6992 Remote Similarity NPD2678 Approved
0.6986 Remote Similarity NPD5546 Clinical (unspecified phase)
0.6986 Remote Similarity NPD3100 Discontinued
0.6985 Remote Similarity NPD947 Approved
0.6985 Remote Similarity NPD4857 Phase 1
0.698 Remote Similarity NPD7091 Discontinued
0.6978 Remote Similarity NPD1883 Approved
0.697 Remote Similarity NPD7461 Approved
0.6966 Remote Similarity NPD1683 Approved
0.6963 Remote Similarity NPD995 Clinical (unspecified phase)
0.6953 Remote Similarity NPD6660 Discontinued
0.6947 Remote Similarity NPD4811 Discontinued
0.6944 Remote Similarity NPD3401 Clinical (unspecified phase)
0.694 Remote Similarity NPD1949 Approved
0.694 Remote Similarity NPD1950 Approved
0.6934 Remote Similarity NPD3475 Approved
0.6934 Remote Similarity NPD3476 Approved
0.6917 Remote Similarity NPD1417 Approved
0.6917 Remote Similarity NPD1419 Approved
0.6912 Remote Similarity NPD8263 Discontinued
0.6911 Remote Similarity NPD458 Approved
0.6906 Remote Similarity NPD3944 Approved
0.6906 Remote Similarity NPD3942 Approved
0.6901 Remote Similarity NPD4451 Approved
0.6901 Remote Similarity NPD4450 Approved
0.6901 Remote Similarity NPD1902 Approved
0.6901 Remote Similarity NPD1953 Discontinued
0.6901 Remote Similarity NPD1904 Approved
0.6889 Remote Similarity NPD6713 Approved
0.6889 Remote Similarity NPD6712 Approved
0.6884 Remote Similarity NPD3137 Clinical (unspecified phase)
0.6884 Remote Similarity NPD1316 Discontinued
0.6884 Remote Similarity NPD1251 Discontinued
0.6875 Remote Similarity NPD1723 Phase 2
0.6875 Remote Similarity NPD1720 Phase 2
0.687 Remote Similarity NPD2997 Approved
0.687 Remote Similarity NPD2998 Approved
0.687 Remote Similarity NPD3000 Approved
0.6866 Remote Similarity NPD2143 Discontinued
0.6861 Remote Similarity NPD4300 Clinical (unspecified phase)
0.6861 Remote Similarity NPD5782 Phase 3
0.6857 Remote Similarity NPD2292 Approved
0.6857 Remote Similarity NPD1998 Approved
0.6857 Remote Similarity NPD2867 Approved
0.685 Remote Similarity NPD3147 Approved
0.685 Remote Similarity NPD3150 Approved
0.685 Remote Similarity NPD2658 Approved
0.685 Remote Similarity NPD3149 Approved
0.685 Remote Similarity NPD2659 Approved
0.685 Remote Similarity NPD3148 Approved
0.6849 Remote Similarity NPD7469 Discontinued
0.6849 Remote Similarity NPD7441 Clinical (unspecified phase)
0.6842 Remote Similarity NPD3623 Clinical (unspecified phase)
0.6842 Remote Similarity NPD3622 Clinical (unspecified phase)
0.6838 Remote Similarity NPD992 Clinical (unspecified phase)
0.6838 Remote Similarity NPD991 Phase 2
0.6831 Remote Similarity NPD1864 Clinical (unspecified phase)
0.6831 Remote Similarity NPD1870 Approved
0.6831 Remote Similarity NPD1866 Approved
0.6831 Remote Similarity NPD3276 Approved
0.6828 Remote Similarity NPD4509 Discontinued
0.6824 Remote Similarity NPD8353 Approved
0.6824 Remote Similarity NPD6575 Clinical (unspecified phase)
0.6824 Remote Similarity NPD8355 Approved
0.6815 Remote Similarity NPD5838 Phase 2
0.6809 Remote Similarity NPD6358 Phase 2
0.6806 Remote Similarity NPD5527 Clinical (unspecified phase)
0.6806 Remote Similarity NPD5526 Phase 2
0.6803 Remote Similarity NPD5423 Phase 2
0.68 Remote Similarity NPD6285 Phase 2
0.6797 Remote Similarity NPD1813 Discontinued
0.6797 Remote Similarity NPD7220 Approved
0.6794 Remote Similarity NPD2210 Approved
0.6794 Remote Similarity NPD2212 Approved
0.6789 Remote Similarity NPD5372 Approved
0.6789 Remote Similarity NPD5371 Approved
0.6788 Remote Similarity NPD3424 Clinical (unspecified phase)
0.6786 Remote Similarity NPD2470 Clinical (unspecified phase)
0.6786 Remote Similarity NPD4029 Approved
0.6786 Remote Similarity NPD4030 Approved
0.6786 Remote Similarity NPD4028 Approved
0.6783 Remote Similarity NPD786 Approved
0.6772 Remote Similarity NPD1762 Approved
0.6772 Remote Similarity NPD1764 Approved
0.6769 Remote Similarity NPD153 Clinical (unspecified phase)
0.6767 Remote Similarity NPD2131 Approved
0.6763 Remote Similarity NPD6740 Clinical (unspecified phase)
0.6761 Remote Similarity NPD2733 Approved
0.6752 Remote Similarity NPD6549 Approved
0.6752 Remote Similarity NPD6548 Approved
0.6748 Remote Similarity NPD563 Approved
0.6748 Remote Similarity NPD564 Approved
0.6741 Remote Similarity NPD5136 Clinical (unspecified phase)
0.6739 Remote Similarity NPD6489 Phase 3
0.6738 Remote Similarity NPD2399 Clinical (unspecified phase)
0.6735 Remote Similarity NPD4402 Clinical (unspecified phase)
0.6733 Remote Similarity NPD8354 Approved
0.6716 Remote Similarity NPD1561 Phase 2
0.6715 Remote Similarity NPD3008 Approved
0.6715 Remote Similarity NPD3012 Approved
0.6715 Remote Similarity NPD3011 Approved
0.6714 Remote Similarity NPD7200 Approved
0.6713 Remote Similarity NPD2304 Approved
0.6712 Remote Similarity NPD6017 Discontinued
0.6711 Remote Similarity NPD4462 Approved
0.6711 Remote Similarity NPD4463 Approved
0.6696 Remote Similarity NPD5656 Clinical (unspecified phase)
0.6695 Remote Similarity NPD5554 Approved
0.6692 Remote Similarity NPD3483 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data