Natural Product: NPC329305

Natural Product ID:  NPC329305
Common Name:   Spiruchostatin C
IUPAC Name:   (1S,5S,6R,9S,15E,20R)-6-[(2S)-butan-2-yl]-5-hydroxy-20-(2-methylsulfinylethyl)-2-oxa-11,12-dithia-7,19,22-triazabicyclo[7.7.6]docos-15-ene-3,8,18,21-tetrone
Synonyms:   Spiruchostatin C
Molecular Formula:   C23H37N3O7S3
Standard InCHIKey:  DISXKJJDDVRQSD-KLMIADJASA-N
Standard InCHI:  InChI=1S/C23H37N3O7S3/c1-4-14(2)21-18(27)12-20(29)33-15-7-5-6-9-34-35-13-17(23(31)26-21)25-22(30)16(8-10-36(3)32)24-19(28)11-15/h5,7,14-18,21,27H,4,6,8-13H2,1-3H3,(H,24,28)(H,25,30)(H,26,31)/b7-5+/t14-,15+,16+,17+,18-,21+,36?/m0/s1
Canonical SMILES:  CC[C@@H]([C@H]1N=C(O)[C@H]2CSSCC/C=C/[C@@H](OC(=O)C[C@@H]1O)CC(=N[C@@H](C(=N2)O)CCS(=O)C)O)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO3190 Burkholderia thailandensis Species Burkholderiaceae Bacteria PMID[21967146]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT371 Cell Line UO-31 Homo sapiens TGI = 320 nM 21967146
NPT369 Cell Line ACHN Homo sapiens TGI = 180 nM 21967146
NPT784 Cell Line MDA-MB-468 Homo sapiens TGI = 23 nM 21967146
NPT406 Cell Line RXF 393 Homo sapiens TGI = 16 nM 21967146
NPT407 Cell Line COLO 205 Homo sapiens TGI = 8 nM 21967146
NPT403 Cell Line UACC-257 Homo sapiens TGI = 33 nM 21967146
NPT380 Cell Line U-251 Homo sapiens TGI = 12 nM 21967146
NPT82 Cell Line MDA-MB-231 Homo sapiens TGI = 150 nM 21967146
NPT376 Cell Line A498 Homo sapiens TGI = 12 nM 21967146
NPT399 Cell Line SF-295 Homo sapiens TGI = 110 nM 21967146
NPT388 Cell Line NCI-H322M Homo sapiens TGI = 100 nM 21967146
NPT308 Cell Line CAKI-1 Homo sapiens TGI = 880 nM 21967146
NPT368 Cell Line SN12C Homo sapiens TGI = 160 nM 21967146
NPT4859 Cell Line NCI TGI = 830 nM 21967146
NPT4859 Cell Line NCI LC50 = 7700 nM 21967146
NPT371 Cell Line UO-31 Homo sapiens Ratio = 4.9 21967146
NPT369 Cell Line ACHN Homo sapiens Ratio = 4 21967146
NPT784 Cell Line MDA-MB-468 Homo sapiens Ratio = 3.9 21967146
NPT406 Cell Line RXF 393 Homo sapiens Ratio = 3.8 21967146
NPT407 Cell Line COLO 205 Homo sapiens Ratio = 3.8 21967146
NPT403 Cell Line UACC-257 Homo sapiens Ratio = 2.9 21967146
NPT380 Cell Line U-251 Homo sapiens Ratio = 2.7 21967146
NPT82 Cell Line MDA-MB-231 Homo sapiens Ratio = 2.4 21967146
NPT376 Cell Line A498 Homo sapiens Ratio = 2.4 21967146
NPT399 Cell Line SF-295 Homo sapiens Ratio = 2.3 21967146
NPT388 Cell Line NCI-H322M Homo sapiens Ratio = 2.3 21967146
NPT308 Cell Line CAKI-1 Homo sapiens Ratio = 2.1 21967146
NPT368 Cell Line SN12C Homo sapiens Ratio = 2.1 21967146
NPT406 Cell Line RXF 393 Homo sapiens Ratio = 1.8 21967146
NPT407 Cell Line COLO 205 Homo sapiens Ratio = 6 21967146
NPT380 Cell Line U-251 Homo sapiens Ratio = 3.6 21967146
NPT376 Cell Line A498 Homo sapiens Ratio = 3.6 21967146
NPT406 Cell Line RXF 393 Homo sapiens LC50 = 170 nM 21967146
NPT407 Cell Line COLO 205 Homo sapiens LC50 = 15 nM 21967146
NPT380 Cell Line U-251 Homo sapiens LC50 = 37 nM 21967146
NPT376 Cell Line A498 Homo sapiens LC50 = 55 nM 21967146
NPT684 Individual Protein Histone deacetylase 1 Homo sapiens Ratio IC50 = 3 23313638
NPT2 Others Unspecified Ratio IC50 = 346 23313638
NPT5666 Individual Protein Histone deacetylase 6 Mus musculus IC50 = 320 nM 23313638
NPT684 Individual Protein Histone deacetylase 1 Homo sapiens IC50 = 0.93 nM 23313638
NPT306 Cell Line PC-3 Homo sapiens GI50 = 23 nM 23313638
NPT90 Cell Line DU-145 Homo sapiens GI50 = 10 nM 23313638
NPT2723 Cell Line MKN-74 Homo sapiens GI50 = 15 nM 23313638
NPT1097 Cell Line MKN-45 Homo sapiens GI50 = 100 nM 23313638
NPT1179 Cell Line MKN-28 Homo sapiens GI50 = 130 nM 23313638
NPT2398 Cell Line MKN-7 Homo sapiens GI50 = 150 nM 23313638
NPT2 Others Unspecified GI50 = 16 nM 23313638
NPT2722 Cell Line St-4 Homo sapiens GI50 = 190 nM 23313638
NPT369 Cell Line ACHN Homo sapiens GI50 = 130 nM 23313638
NPT2 Others Unspecified GI50 = 35 nM 23313638
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 = 15 nM 23313638
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 = 10 nM 23313638
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 = 10 nM 23313638
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 = 58 nM 23313638
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 = 16 nM 23313638
NPT390 Cell Line LOX IMVI Homo sapiens GI50 = 10 nM 23313638
NPT576 Cell Line DMS-114 Homo sapiens GI50 = 10 nM 23313638
NPT572 Cell Line DMS-273 Homo sapiens GI50 = 32 nM 23313638
NPT81 Cell Line A549 Homo sapiens GI50 = 10 nM 23313638
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 16 nM 23313638
NPT455 Cell Line NCI-H522 Homo sapiens GI50 = 10 nM 23313638
NPT405 Cell Line NCI-H226 Homo sapiens GI50 = 53 nM 23313638
NPT370 Cell Line NCI-H23 Homo sapiens GI50 = 10 nM 23313638
NPT393 Cell Line HCT-116 Homo sapiens GI50 = 10 nM 23313638
NPT148 Cell Line HCT-15 Homo sapiens GI50 = 3800 nM 23313638
NPT139 Cell Line HT-29 Homo sapiens GI50 = 10 nM 23313638
NPT386 Cell Line KM12 Homo sapiens GI50 = 10 nM 23313638
NPT2 Others Unspecified GI50 = 11 nM 23313638
NPT578 Cell Line SNB-78 Homo sapiens GI50 = 78 nM 23313638
NPT392 Cell Line SNB-75 Homo sapiens GI50 = 10 nM 23313638
NPT374 Cell Line SF-539 Homo sapiens GI50 = 10 nM 23313638
NPT399 Cell Line SF-295 Homo sapiens GI50 = 32 nM 23313638
NPT395 Cell Line SF-268 Homo sapiens GI50 = 25 nM 23313638
NPT380 Cell Line U-251 Homo sapiens GI50 = 52 nM 23313638
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 = 14 nM 23313638
NPT83 Cell Line MCF7 Homo sapiens GI50 = 47 nM 23313638
NPT2 Others Unspecified GI50 = 150 nM 23313638
NPT2 Others Unspecified GI50 = 25 nM 23313638
NPT2 Others Unspecified GI50 = 20 nM 23313638

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC329305 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7542 Intermediate Similarity NPC201968
0.7521 Intermediate Similarity NPC50694
0.7232 Intermediate Similarity NPC474873
0.7034 Intermediate Similarity NPC127578
0.7018 Intermediate Similarity NPC325339
0.7018 Intermediate Similarity NPC72401
0.6972 Remote Similarity NPC319473
0.6949 Remote Similarity NPC474891
0.6903 Remote Similarity NPC132931
0.6838 Remote Similarity NPC101106
0.6838 Remote Similarity NPC135216
0.6789 Remote Similarity NPC159369
0.6789 Remote Similarity NPC39290
0.6777 Remote Similarity NPC279383
0.6777 Remote Similarity NPC268327
0.6777 Remote Similarity NPC273215
0.6777 Remote Similarity NPC295444
0.6762 Remote Similarity NPC474312
0.6752 Remote Similarity NPC74035
0.6723 Remote Similarity NPC287572
0.6723 Remote Similarity NPC474969
0.6723 Remote Similarity NPC471636
0.6723 Remote Similarity NPC476034
0.6639 Remote Similarity NPC250187
0.6602 Remote Similarity NPC316242
0.6585 Remote Similarity NPC475988
0.6583 Remote Similarity NPC475150
0.6555 Remote Similarity NPC271269
0.6545 Remote Similarity NPC193386
0.6538 Remote Similarity NPC315535
0.6538 Remote Similarity NPC478017
0.6538 Remote Similarity NPC315131
0.6504 Remote Similarity NPC469865
0.648 Remote Similarity NPC477554
0.6471 Remote Similarity NPC14537
0.6466 Remote Similarity NPC234542
0.6439 Remote Similarity NPC477793
0.6439 Remote Similarity NPC329919
0.6429 Remote Similarity NPC477553
0.6417 Remote Similarity NPC473252
0.6417 Remote Similarity NPC154601
0.641 Remote Similarity NPC473224
0.64 Remote Similarity NPC471645
0.6393 Remote Similarity NPC473578
0.6381 Remote Similarity NPC127526
0.6381 Remote Similarity NPC473984
0.6379 Remote Similarity NPC476344
0.6378 Remote Similarity NPC477555
0.6371 Remote Similarity NPC474995
0.6364 Remote Similarity NPC251330
0.6299 Remote Similarity NPC147707
0.6283 Remote Similarity NPC319021
0.6268 Remote Similarity NPC160222
0.6268 Remote Similarity NPC193753
0.625 Remote Similarity NPC469895
0.625 Remote Similarity NPC474563
0.6207 Remote Similarity NPC150041
0.6198 Remote Similarity NPC205176
0.6183 Remote Similarity NPC478015
0.6183 Remote Similarity NPC478014
0.6183 Remote Similarity NPC478016
0.6179 Remote Similarity NPC307903
0.6179 Remote Similarity NPC140251
0.616 Remote Similarity NPC29501
0.6154 Remote Similarity NPC123141
0.6148 Remote Similarity NPC475918
0.6148 Remote Similarity NPC472615
0.6142 Remote Similarity NPC472536
0.6142 Remote Similarity NPC474984
0.6142 Remote Similarity NPC103391
0.6134 Remote Similarity NPC233932
0.6129 Remote Similarity NPC474725
0.6126 Remote Similarity NPC261380
0.6102 Remote Similarity NPC167380
0.6098 Remote Similarity NPC475800
0.608 Remote Similarity NPC122926
0.608 Remote Similarity NPC113012
0.6075 Remote Similarity NPC474833
0.6066 Remote Similarity NPC472616
0.6063 Remote Similarity NPC273814
0.6058 Remote Similarity NPC268844
0.6058 Remote Similarity NPC314686
0.6036 Remote Similarity NPC158756
0.6033 Remote Similarity NPC128501
0.6032 Remote Similarity NPC476875
0.6032 Remote Similarity NPC12270
0.6017 Remote Similarity NPC121857
0.6017 Remote Similarity NPC475503
0.6017 Remote Similarity NPC175614
0.5982 Remote Similarity NPC470755
0.5981 Remote Similarity NPC281296
0.597 Remote Similarity NPC160493
0.5968 Remote Similarity NPC271562
0.5966 Remote Similarity NPC475646
0.5966 Remote Similarity NPC4834
0.5962 Remote Similarity NPC474590
0.5954 Remote Similarity NPC477515
0.5954 Remote Similarity NPC169328
0.5954 Remote Similarity NPC313802
0.5954 Remote Similarity NPC314268
0.5954 Remote Similarity NPC67917
0.5952 Remote Similarity NPC477997
0.595 Remote Similarity NPC313234
0.5946 Remote Similarity NPC131669
0.5946 Remote Similarity NPC473390
0.5943 Remote Similarity NPC476924
0.594 Remote Similarity NPC80150
0.594 Remote Similarity NPC273185
0.5932 Remote Similarity NPC314009
0.5932 Remote Similarity NPC54905
0.5929 Remote Similarity NPC261721
0.5929 Remote Similarity NPC469910
0.5929 Remote Similarity NPC469483
0.5926 Remote Similarity NPC11796
0.5926 Remote Similarity NPC218817
0.5926 Remote Similarity NPC121200
0.5922 Remote Similarity NPC478256
0.5922 Remote Similarity NPC291196
0.5922 Remote Similarity NPC103712
0.592 Remote Similarity NPC70235
0.5909 Remote Similarity NPC310467
0.5906 Remote Similarity NPC21713
0.5906 Remote Similarity NPC475608
0.5905 Remote Similarity NPC43219
0.5902 Remote Similarity NPC469598
0.5896 Remote Similarity NPC280498
0.5893 Remote Similarity NPC477199
0.5888 Remote Similarity NPC469514
0.5882 Remote Similarity NPC165332
0.5882 Remote Similarity NPC204556
0.5882 Remote Similarity NPC314282
0.5882 Remote Similarity NPC180722
0.5882 Remote Similarity NPC195645
0.5878 Remote Similarity NPC9714
0.5878 Remote Similarity NPC315974
0.5877 Remote Similarity NPC477959
0.5877 Remote Similarity NPC86005
0.5873 Remote Similarity NPC24389
0.5873 Remote Similarity NPC298484
0.5872 Remote Similarity NPC321728
0.5862 Remote Similarity NPC473448
0.5862 Remote Similarity NPC145666
0.5859 Remote Similarity NPC1111
0.5859 Remote Similarity NPC261750
0.5856 Remote Similarity NPC85772
0.5856 Remote Similarity NPC229825
0.5856 Remote Similarity NPC89555
0.5856 Remote Similarity NPC474252
0.5854 Remote Similarity NPC215988
0.5849 Remote Similarity NPC86064
0.5849 Remote Similarity NPC288086
0.5847 Remote Similarity NPC5418
0.5846 Remote Similarity NPC30196
0.5841 Remote Similarity NPC255307
0.5833 Remote Similarity NPC40812
0.5833 Remote Similarity NPC53844
0.5833 Remote Similarity NPC320630
0.5833 Remote Similarity NPC116177
0.5833 Remote Similarity NPC265662
0.5833 Remote Similarity NPC7563
0.5826 Remote Similarity NPC475819
0.5826 Remote Similarity NPC476805
0.5826 Remote Similarity NPC476803
0.5825 Remote Similarity NPC474812
0.5821 Remote Similarity NPC190663
0.582 Remote Similarity NPC316250
0.582 Remote Similarity NPC175531
0.5812 Remote Similarity NPC314500
0.581 Remote Similarity NPC126061
0.5806 Remote Similarity NPC119329
0.5806 Remote Similarity NPC64168
0.5804 Remote Similarity NPC155670
0.5804 Remote Similarity NPC145748
0.5804 Remote Similarity NPC95478
0.5804 Remote Similarity NPC169575
0.5804 Remote Similarity NPC16488
0.5804 Remote Similarity NPC69469
0.5804 Remote Similarity NPC40746
0.5804 Remote Similarity NPC475989
0.5802 Remote Similarity NPC316325
0.5802 Remote Similarity NPC6531
0.5802 Remote Similarity NPC476190
0.5798 Remote Similarity NPC189764
0.5797 Remote Similarity NPC164476
0.5797 Remote Similarity NPC471471
0.5797 Remote Similarity NPC121601
0.5794 Remote Similarity NPC171734
0.5794 Remote Similarity NPC199445
0.5789 Remote Similarity NPC316426
0.5789 Remote Similarity NPC258824
0.5789 Remote Similarity NPC475461
0.5789 Remote Similarity NPC315395
0.5789 Remote Similarity NPC116575
0.5789 Remote Similarity NPC286551
0.5789 Remote Similarity NPC475753
0.5789 Remote Similarity NPC305475
0.5785 Remote Similarity NPC83895
0.5785 Remote Similarity NPC187761
0.5785 Remote Similarity NPC255592
0.5785 Remote Similarity NPC308567

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC329305 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.89 High Similarity NPD4228 Discovery
0.7699 Intermediate Similarity NPD6413 Approved
0.7037 Intermediate Similarity NPD6095 Approved
0.7037 Intermediate Similarity NPD6094 Approved
0.6891 Remote Similarity NPD6421 Discontinued
0.6838 Remote Similarity NPD4211 Phase 1
0.6757 Remote Similarity NPD5781 Clinical (unspecified phase)
0.6538 Remote Similarity NPD7917 Clinical (unspecified phase)
0.6538 Remote Similarity NPD7918 Clinical (unspecified phase)
0.6486 Remote Similarity NPD5370 Suspended
0.6475 Remote Similarity NPD6420 Discontinued
0.6429 Remote Similarity NPD7505 Discontinued
0.6372 Remote Similarity NPD4810 Clinical (unspecified phase)
0.625 Remote Similarity NPD2258 Approved
0.625 Remote Similarity NPD2259 Approved
0.6053 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6032 Remote Similarity NPD1719 Phase 1
0.5985 Remote Similarity NPD8390 Approved
0.5985 Remote Similarity NPD8391 Approved
0.5985 Remote Similarity NPD8392 Approved
0.5985 Remote Similarity NPD4209 Clinical (unspecified phase)
0.5929 Remote Similarity NPD6422 Discontinued
0.5926 Remote Similarity NPD8451 Approved
0.5926 Remote Similarity NPD8273 Phase 1
0.5926 Remote Similarity NPD3732 Approved
0.5891 Remote Similarity NPD7915 Approved
0.5891 Remote Similarity NPD7916 Approved
0.589 Remote Similarity NPD6119 Clinical (unspecified phase)
0.5882 Remote Similarity NPD7839 Suspended
0.5882 Remote Similarity NPD8448 Approved
0.5865 Remote Similarity NPD8444 Approved
0.5828 Remote Similarity NPD6390 Discontinued
0.5827 Remote Similarity NPD7828 Discontinued
0.5804 Remote Similarity NPD7154 Phase 3
0.5802 Remote Similarity NPD7500 Approved
0.5793 Remote Similarity NPD3648 Clinical (unspecified phase)
0.5781 Remote Similarity NPD7116 Clinical (unspecified phase)
0.5778 Remote Similarity NPD7829 Approved
0.5778 Remote Similarity NPD7642 Approved
0.5778 Remote Similarity NPD7830 Approved
0.5763 Remote Similarity NPD2251 Approved
0.5763 Remote Similarity NPD2252 Approved
0.5763 Remote Similarity NPD5778 Approved
0.5763 Remote Similarity NPD5779 Approved
0.5735 Remote Similarity NPD8299 Approved
0.5735 Remote Similarity NPD8341 Approved
0.5735 Remote Similarity NPD8340 Approved
0.5735 Remote Similarity NPD8342 Approved
0.5726 Remote Similarity NPD5785 Approved
0.5714 Remote Similarity NPD7517 Approved
0.5714 Remote Similarity NPD7345 Approved
0.5714 Remote Similarity NPD7519 Approved
0.5714 Remote Similarity NPD4269 Approved
0.5714 Remote Similarity NPD4270 Approved
0.5714 Remote Similarity NPD7518 Approved
0.5702 Remote Similarity NPD842 Phase 3
0.5685 Remote Similarity NPD6864 Phase 2
0.5685 Remote Similarity NPD6865 Phase 2
0.5678 Remote Similarity NPD7983 Approved
0.5676 Remote Similarity NPD5790 Clinical (unspecified phase)
0.5676 Remote Similarity NPD4252 Approved
0.5652 Remote Similarity NPD5786 Approved
0.5643 Remote Similarity NPD6914 Discontinued
0.5641 Remote Similarity NPD6101 Approved
0.5641 Remote Similarity NPD5764 Clinical (unspecified phase)
0.5625 Remote Similarity NPD5369 Approved
0.562 Remote Similarity NPD4480 Approved

Structure

External Identifiers

PubChem CID   56602463
ChEMBL   CHEMBL1835659
ZINC  

Physicochemical Properties

Molecular Weight:  563.18
ALogP:  -0.7185
MLogP:  2.56
XLogP:  0.839
# Rotatable Bonds:  12
Polar Surface Area:  231.18
# H-Bond Aceptor:  10
# H-Bond Donor:  4
# Rings:  2
# Heavy Atoms:  36

Download Data

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Biological Activities  
Similar NPs/Drugs