Natural Product: NPC273185

Natural Product ID:  NPC273185
Common Name:   Bengamide B
IUPAC Name:   [(3S,6S)-1-methyl-7-oxo-6-[[(E,2R,3R,4S,5R)-3,4,5-trihydroxy-2-methoxy-8-methylnon-6-enoyl]amino]azepan-3-yl] tetradecanoate
Synonyms:  
Molecular Formula:   C32H58N2O8
Standard InCHIKey:  PFRKTXMXGDERHT-UCDUEDMDSA-N
Standard InCHI:  InChI=1S/C32H58N2O8/c1-6-7-8-9-10-11-12-13-14-15-16-17-27(36)42-24-19-20-25(32(40)34(4)22-24)33-31(39)30(41-5)29(38)28(37)26(35)21-18-23(2)3/h18,21,23-26,28-30,35,37-38H,6-17,19-20,22H2,1-5H3,(H,33,39)/b21-18+/t24-,25-,26+,28-,29+,30+/m0/s1
Canonical SMILES:  CCCCCCCCCCCCCC(=O)O[C@H]1CC[C@@H](C(=O)N(C1)C)N=C([C@@H]([C@@H]([C@H]([C@@H](/C=C/C(C)C)O)O)O)OC)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO32703 pachastrissa sp. Species Calthropellidae Eukaryota PMID[10346943]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT573 Cell Line M19-MEL Homo sapiens GI50 6.109 nM 22624550
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 19.95 nM 12350151
NPT370 Cell Line NCI-H23 Homo sapiens GI50 9.772 nM 15267244
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 11.35 nM 10096871
NPT308 Cell Line CAKI-1 Homo sapiens GI50 21.58 nM 20039643
NPT458 Cell Line IGROV-1 Homo sapiens GI50 2.35 nM 19948405
NPT397 Cell Line NCI-H460 Homo sapiens GI50 1.5 nM PubChem BioAssay data set
NPT398 Cell Line UACC-62 Homo sapiens GI50 8.072 nM Open TG-GATES in vivo data: Biochemistry
NPT576 Cell Line DMS-114 Homo sapiens GI50 2.844 nM 20346682
NPT391 Cell Line HCC 2998 Homo sapiens GI50 1.945 nM 26819664
NPT393 Cell Line HCT-116 Homo sapiens IC50 = 2 nM 17958396
NPT113 Cell Line RAW264.7 Mus musculus IC50 > 50000 nM 17958396
NPT116 Cell Line HL-60 Homo sapiens GI50 10 nM 26848627
NPT577 Cell Line RXF 631 Homo sapiens GI50 1.5 nM 25747495
NPT390 Cell Line LOX IMVI Homo sapiens GI50 2.163 nM 15646539
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 7.816 nM 24079775
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 6.427 nM 10775404
NPT406 Cell Line RXF 393 Homo sapiens GI50 61.52 nM PubChem BioAssay data set
NPT379 Cell Line HOP-62 Homo sapiens GI50 8.091 nM 18396905
NPT372 Cell Line HOP-92 Homo sapiens GI50 6.839 nM 24020806
NPT393 Cell Line HCT-116 Homo sapiens GI50 2.472 nM 25927586
NPT375 Cell Line Malme-3M Homo sapiens GI50 36.22 nM 17190444
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 12.25 nM 22916954
NPT384 Cell Line TK-10 Homo sapiens GI50 179.47 nM 10.6019/CHEMBL1201861
NPT405 Cell Line NCI-H226 Homo sapiens GI50 5.916 nM 24709561
NPT574 Cell Line XF498 Homo sapiens GI50 16.44 nM 15043409
NPT572 Cell Line DMS-273 Homo sapiens GI50 1.5 nM 17420206
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 72.11 nM 18541727
NPT383 Cell Line SNB-19 Homo sapiens GI50 7.998 nM 19506058
NPT376 Cell Line A498 Homo sapiens GI50 14996.85 nM 18625769
NPT578 Cell Line SNB-78 Homo sapiens GI50 172.98 nM 10.1007/s00044-013-0720-3
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 4645.15 nM DrugMatrix in vivo data: Hematology
NPT2 Others Unspecified IC50 = 85 nM 17352491
NPT386 Cell Line KM12 Homo sapiens GI50 4.178 nM 26034885
NPT374 Cell Line SF-539 Homo sapiens GI50 10.81 nM 24937209
NPT399 Cell Line SF-295 Homo sapiens GI50 6.745 nM 22758660
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 33.42 nM 17950604
NPT112 Cell Line MOLT-4 Homo sapiens GI50 6.427 nM 18178085
NPT139 Cell Line HT-29 Homo sapiens GI50 4.786 nM Open TG-GATES in vivo data: Hematology
NPT732 Cell Line HOP-18 Homo sapiens GI50 133.66 nM 12398531
NPT392 Cell Line SNB-75 Homo sapiens GI50 104.71 nM 19072209
NPT385 Cell Line SR Homo sapiens GI50 2.099 nM 16524728
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 14 nM 19748786
NPT403 Cell Line UACC-257 Homo sapiens GI50 33.11 nM 26135471
NPT5374 Individual Protein Methionine aminopeptidase 1 Homo sapiens Ratio = 2.4 19105653
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 500 nM PubChem BioAssay data set
NPT368 Cell Line SN12C Homo sapiens GI50 4.188 nM 8864235
NPT394 Cell Line EKVX Homo sapiens GI50 1076.47 nM 8289059
NPT388 Cell Line NCI-H322M Homo sapiens GI50 14996.85 nM 21643465
NPT387 Cell Line M14 Homo sapiens GI50 12.76 nM 21572583
NPT579 Cell Line DLD-1 Homo sapiens GI50 7.047 nM 17387156
NPT407 Cell Line COLO 205 Homo sapiens GI50 2.594 nM 17724156
NPT323 Cell Line SW-620 Homo sapiens GI50 4.325 nM 18710917
NPT111 Cell Line K562 Homo sapiens GI50 8.11 nM 19258280
NPT2 Others Unspecified Ratio = 2.1 10785416
NPT2 Others Unspecified Ratio = 2.6 18052326
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 89.54 nM 10579870
NPT731 Cell Line LXFL 529 Homo sapiens GI50 11.4 nM 15104491
NPT380 Cell Line U-251 Homo sapiens GI50 2.864 nM DrugMatrix in vitro pharmacology data
NPT575 Cell Line KM-20L2 Homo sapiens GI50 5.768 nM 12713399
NPT148 Cell Line HCT-15 Homo sapiens GI50 27.99 nM DrugMatrix in vitro pharmacology data
NPT401 Cell Line 786-0 Homo sapiens GI50 4.571 nM 17158054
NPT369 Cell Line ACHN Homo sapiens GI50 2.606 nM 25611215
NPT81 Cell Line A549 Homo sapiens GI50 1.5 nM DrugMatrix in vivo data: Pathology
NPT395 Cell Line SF-268 Homo sapiens GI50 3.597 nM 20061160
NPT371 Cell Line UO-31 Homo sapiens GI50 20.8 nM 10.1007/s00044-010-9338-x
NPT455 Cell Line NCI-H522 Homo sapiens GI50 5.768 nM 22584254

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC273185 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9018 High Similarity NPC251122
0.8087 Intermediate Similarity NPC74035
0.7642 Intermediate Similarity NPC103391
0.7642 Intermediate Similarity NPC472536
0.7398 Intermediate Similarity NPC476875
0.7154 Intermediate Similarity NPC315188
0.7107 Intermediate Similarity NPC476877
0.7105 Intermediate Similarity NPC39290
0.7105 Intermediate Similarity NPC159369
0.7049 Intermediate Similarity NPC205176
0.6992 Remote Similarity NPC476876
0.6992 Remote Similarity NPC475918
0.6959 Remote Similarity NPC315809
0.6959 Remote Similarity NPC314050
0.688 Remote Similarity NPC171734
0.6866 Remote Similarity NPC470650
0.6866 Remote Similarity NPC470653
0.6866 Remote Similarity NPC470654
0.6855 Remote Similarity NPC201128
0.6807 Remote Similarity NPC469739
0.6786 Remote Similarity NPC99864
0.6746 Remote Similarity NPC207820
0.6714 Remote Similarity NPC120420
0.6692 Remote Similarity NPC470652
0.6691 Remote Similarity NPC309525
0.6691 Remote Similarity NPC120335
0.6689 Remote Similarity NPC135121
0.6667 Remote Similarity NPC477217
0.6667 Remote Similarity NPC188785
0.6667 Remote Similarity NPC201244
0.6642 Remote Similarity NPC160688
0.6639 Remote Similarity NPC475758
0.6618 Remote Similarity NPC314512
0.6618 Remote Similarity NPC314451
0.6618 Remote Similarity NPC313342
0.6618 Remote Similarity NPC313333
0.6613 Remote Similarity NPC471097
0.6613 Remote Similarity NPC475149
0.66 Remote Similarity NPC2501
0.6594 Remote Similarity NPC477793
0.6594 Remote Similarity NPC329919
0.6591 Remote Similarity NPC6531
0.6587 Remote Similarity NPC154601
0.6585 Remote Similarity NPC233932
0.6585 Remote Similarity NPC475791
0.6585 Remote Similarity NPC13175
0.6579 Remote Similarity NPC228638
0.6561 Remote Similarity NPC471053
0.6561 Remote Similarity NPC471052
0.6561 Remote Similarity NPC471051
0.6558 Remote Similarity NPC316244
0.6516 Remote Similarity NPC297145
0.6516 Remote Similarity NPC197743
0.6515 Remote Similarity NPC296043
0.6515 Remote Similarity NPC30196
0.6513 Remote Similarity NPC162104
0.6507 Remote Similarity NPC46098
0.6507 Remote Similarity NPC163392
0.6507 Remote Similarity NPC239762
0.6507 Remote Similarity NPC307357
0.6507 Remote Similarity NPC268841
0.6496 Remote Similarity NPC36254
0.6493 Remote Similarity NPC477237
0.6491 Remote Similarity NPC474312
0.6486 Remote Similarity NPC52748
0.6483 Remote Similarity NPC127741
0.6471 Remote Similarity NPC473341
0.6471 Remote Similarity NPC122590
0.6466 Remote Similarity NPC329216
0.6462 Remote Similarity NPC29501
0.6446 Remote Similarity NPC192066
0.6446 Remote Similarity NPC23454
0.6446 Remote Similarity NPC17290
0.6446 Remote Similarity NPC70323
0.6446 Remote Similarity NPC262312
0.6446 Remote Similarity NPC35269
0.6446 Remote Similarity NPC256570
0.6446 Remote Similarity NPC3568
0.6442 Remote Similarity NPC477462
0.6439 Remote Similarity NPC471645
0.6424 Remote Similarity NPC471820
0.6424 Remote Similarity NPC471821
0.6418 Remote Similarity NPC235625
0.6417 Remote Similarity NPC111567
0.6417 Remote Similarity NPC263545
0.6417 Remote Similarity NPC282705
0.6417 Remote Similarity NPC473581
0.6417 Remote Similarity NPC186840
0.6417 Remote Similarity NPC475125
0.6417 Remote Similarity NPC473604
0.6417 Remote Similarity NPC182632
0.6417 Remote Similarity NPC15851
0.6417 Remote Similarity NPC473950
0.6417 Remote Similarity NPC309898
0.6412 Remote Similarity NPC1111
0.6412 Remote Similarity NPC261750
0.6406 Remote Similarity NPC251330
0.6403 Remote Similarity NPC314282
0.6397 Remote Similarity NPC477238
0.6378 Remote Similarity NPC323720
0.6376 Remote Similarity NPC476978
0.637 Remote Similarity NPC68865
0.6364 Remote Similarity NPC471202
0.6364 Remote Similarity NPC63191
0.6357 Remote Similarity NPC470655
0.6357 Remote Similarity NPC470651
0.6351 Remote Similarity NPC71866
0.6351 Remote Similarity NPC309450
0.6351 Remote Similarity NPC475266
0.6351 Remote Similarity NPC247776
0.6351 Remote Similarity NPC475278
0.6351 Remote Similarity NPC304299
0.6343 Remote Similarity NPC475642
0.6341 Remote Similarity NPC197294
0.6341 Remote Similarity NPC183449
0.6341 Remote Similarity NPC8098
0.6341 Remote Similarity NPC45313
0.6341 Remote Similarity NPC26108
0.6333 Remote Similarity NPC139782
0.6333 Remote Similarity NPC74672
0.6333 Remote Similarity NPC242503
0.6333 Remote Similarity NPC43074
0.6333 Remote Similarity NPC209047
0.6328 Remote Similarity NPC271269
0.6328 Remote Similarity NPC473252
0.6327 Remote Similarity NPC315848
0.6327 Remote Similarity NPC315210
0.6319 Remote Similarity NPC246079
0.6312 Remote Similarity NPC313962
0.6311 Remote Similarity NPC54961
0.6311 Remote Similarity NPC158445
0.6311 Remote Similarity NPC282088
0.6311 Remote Similarity NPC156782
0.6311 Remote Similarity NPC157353
0.6294 Remote Similarity NPC314361
0.6288 Remote Similarity NPC60432
0.6288 Remote Similarity NPC314550
0.6283 Remote Similarity NPC474833
0.6281 Remote Similarity NPC475603
0.6281 Remote Similarity NPC61894
0.628 Remote Similarity NPC273755
0.625 Remote Similarity NPC145113
0.625 Remote Similarity NPC14537
0.6242 Remote Similarity NPC473354
0.6242 Remote Similarity NPC471165
0.624 Remote Similarity NPC220234
0.6231 Remote Similarity NPC475150
0.6231 Remote Similarity NPC474099
0.6231 Remote Similarity NPC70235
0.6226 Remote Similarity NPC471527
0.6225 Remote Similarity NPC5620
0.6224 Remote Similarity NPC316401
0.6222 Remote Similarity NPC201968
0.622 Remote Similarity NPC72401
0.622 Remote Similarity NPC325339
0.622 Remote Similarity NPC477198
0.6218 Remote Similarity NPC470902
0.6214 Remote Similarity NPC474371
0.621 Remote Similarity NPC175614
0.6205 Remote Similarity NPC50016
0.62 Remote Similarity NPC197682
0.62 Remote Similarity NPC176226
0.619 Remote Similarity NPC473224
0.6187 Remote Similarity NPC316133
0.6187 Remote Similarity NPC314629
0.6187 Remote Similarity NPC318445
0.6187 Remote Similarity NPC50520
0.6184 Remote Similarity NPC262077
0.6182 Remote Similarity NPC306804
0.6176 Remote Similarity NPC471048
0.6176 Remote Similarity NPC471049
0.6176 Remote Similarity NPC471050
0.617 Remote Similarity NPC473249
0.6165 Remote Similarity NPC478024
0.6165 Remote Similarity NPC469865
0.6164 Remote Similarity NPC1390
0.6164 Remote Similarity NPC62104
0.6159 Remote Similarity NPC156379
0.6159 Remote Similarity NPC23963
0.6159 Remote Similarity NPC475383
0.6145 Remote Similarity NPC159767
0.6145 Remote Similarity NPC155506
0.6135 Remote Similarity NPC107938
0.6135 Remote Similarity NPC294516
0.6133 Remote Similarity NPC168113
0.6131 Remote Similarity NPC45037
0.6129 Remote Similarity NPC7817
0.6129 Remote Similarity NPC475168
0.6119 Remote Similarity NPC469597
0.6111 Remote Similarity NPC475440
0.6111 Remote Similarity NPC234542
0.6103 Remote Similarity NPC209734
0.6099 Remote Similarity NPC315058
0.609 Remote Similarity NPC181510
0.609 Remote Similarity NPC47857
0.609 Remote Similarity NPC168758
0.6087 Remote Similarity NPC11379
0.6087 Remote Similarity NPC230849
0.6084 Remote Similarity NPC316205
0.6084 Remote Similarity NPC137627

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC273185 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7603 Intermediate Similarity NPD6421 Discontinued
0.7068 Intermediate Similarity NPD8273 Phase 1
0.6786 Remote Similarity NPD8415 Approved
0.6738 Remote Similarity NPD8387 Clinical (unspecified phase)
0.6618 Remote Similarity NPD8299 Approved
0.6618 Remote Similarity NPD8340 Approved
0.6618 Remote Similarity NPD8341 Approved
0.6618 Remote Similarity NPD8342 Approved
0.6541 Remote Similarity NPD7756 Clinical (unspecified phase)
0.65 Remote Similarity NPD8392 Approved
0.65 Remote Similarity NPD8390 Approved
0.65 Remote Similarity NPD8391 Approved
0.6449 Remote Similarity NPD8451 Approved
0.6449 Remote Similarity NPD4816 Clinical (unspecified phase)
0.6403 Remote Similarity NPD8448 Approved
0.6343 Remote Similarity NPD6935 Phase 3
0.6343 Remote Similarity NPD6936 Clinical (unspecified phase)
0.6333 Remote Similarity NPD8522 Clinical (unspecified phase)
0.6311 Remote Similarity NPD8394 Approved
0.6296 Remote Similarity NPD7641 Discontinued
0.6284 Remote Similarity NPD8384 Approved
0.6187 Remote Similarity NPD7642 Approved
0.617 Remote Similarity NPD7747 Phase 1
0.617 Remote Similarity NPD7746 Phase 1
0.6148 Remote Similarity NPD7983 Approved
0.6103 Remote Similarity NPD8137 Clinical (unspecified phase)
0.604 Remote Similarity NPD8173 Phase 2
0.604 Remote Similarity NPD8172 Phase 2
0.6031 Remote Similarity NPD8140 Approved
0.5975 Remote Similarity NPD8414 Discontinued
0.5952 Remote Similarity NPD4228 Discovery
0.5942 Remote Similarity NPD6918 Phase 1
0.5929 Remote Similarity NPD8444 Approved
0.5929 Remote Similarity NPD8274 Clinical (unspecified phase)
0.5909 Remote Similarity NPD8307 Discontinued
0.5906 Remote Similarity NPD8038 Phase 2
0.5896 Remote Similarity NPD6420 Discontinued
0.5887 Remote Similarity NPD7623 Phase 3
0.5887 Remote Similarity NPD7624 Clinical (unspecified phase)
0.5873 Remote Similarity NPD7841 Clinical (unspecified phase)
0.5852 Remote Similarity NPD1719 Phase 1
0.5852 Remote Similarity NPD2204 Approved
0.5845 Remote Similarity NPD7830 Approved
0.5845 Remote Similarity NPD7829 Approved
0.584 Remote Similarity NPD5781 Clinical (unspecified phase)
0.5839 Remote Similarity NPD8417 Discontinued
0.5839 Remote Similarity NPD7916 Approved
0.5839 Remote Similarity NPD7915 Approved
0.5833 Remote Similarity NPD8323 Discontinued
0.5827 Remote Similarity NPD7839 Suspended
0.5821 Remote Similarity NPD8306 Approved
0.5821 Remote Similarity NPD8305 Approved
0.5806 Remote Similarity NPD4780 Clinical (unspecified phase)
0.5802 Remote Similarity NPD1407 Approved
0.5802 Remote Similarity NPD2259 Approved
0.5802 Remote Similarity NPD2258 Approved
0.5797 Remote Similarity NPD869 Approved
0.5785 Remote Similarity NPD3723 Clinical (unspecified phase)
0.5782 Remote Similarity NPD3626 Phase 3
0.5775 Remote Similarity NPD8080 Discontinued
0.5769 Remote Similarity NPD7651 Approved
0.5764 Remote Similarity NPD2584 Suspended
0.5755 Remote Similarity NPD7500 Approved
0.5735 Remote Similarity NPD7116 Clinical (unspecified phase)
0.5726 Remote Similarity NPD3716 Discontinued
0.5725 Remote Similarity NPD1000 Clinical (unspecified phase)
0.5724 Remote Similarity NPD8074 Phase 3
0.5714 Remote Similarity NPD1385 Discontinued
0.5704 Remote Similarity NPD6413 Approved
0.5704 Remote Similarity NPD7739 Clinical (unspecified phase)
0.5695 Remote Similarity NPD8416 Discontinued
0.5682 Remote Similarity NPD8045 Clinical (unspecified phase)
0.568 Remote Similarity NPD4261 Phase 1
0.5667 Remote Similarity NPD882 Phase 2
0.5667 Remote Similarity NPD883 Phase 2
0.5662 Remote Similarity NPD8087 Discontinued
0.5656 Remote Similarity NPD7759 Phase 2
0.5656 Remote Similarity NPD7760 Phase 2
0.5652 Remote Similarity NPD1376 Discontinued
0.5645 Remote Similarity NPD618 Clinical (unspecified phase)
0.5641 Remote Similarity NPD3160 Suspended
0.5634 Remote Similarity NPD8347 Approved
0.5634 Remote Similarity NPD8346 Approved
0.5634 Remote Similarity NPD8345 Approved
0.5608 Remote Similarity NPD7751 Phase 1
0.5608 Remote Similarity NPD3608 Clinical (unspecified phase)
0.5605 Remote Similarity NPD6860 Clinical (unspecified phase)
0.56 Remote Similarity NPD4738 Phase 2

Structure

External Identifiers

PubChem CID   6444128
ChEMBL   CHEMBL446079
ZINC  

Physicochemical Properties

Molecular Weight:  598.42
ALogP:  -5.2593
MLogP:  3.88
XLogP:  6.135
# Rotatable Bonds:  31
Polar Surface Area:  149.12
# H-Bond Aceptor:  10
# H-Bond Donor:  4
# Rings:  1
# Heavy Atoms:  42

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs