Natural Product: NPC125570

Natural Product ID:  NPC125570
Common Name:   Graminone B
IUPAC Name:   (3R,3aR,6R,6aS)-6-(3-hydroxy-4,5-dimethoxyphenyl)-3-(3-hydroxy-5-methoxyphenyl)-3,3a,6,6a-tetrahydro-1H-furo[3,4-c]furan-4-one
Synonyms:  
Molecular Formula:   C21H22O8
Standard InCHIKey:  JTDVCRMQMDJLOR-OAOYMFHYSA-N
Standard InCHI:  InChI=1S/C21H22O8/c1-25-13-5-10(4-12(22)8-13)19-17-14(9-28-19)18(29-21(17)24)11-6-15(23)20(27-3)16(7-11)26-2/h4-8,14,17-19,22-23H,9H2,1-3H3/t14-,17-,18+,19+/m1/s1
Canonical SMILES:  COc1cc(O)cc(c1)[C@@H]1OC[C@@H]2[C@H]1C(=O)O[C@H]2c1cc(O)c(c(c1)OC)OC
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26534 Streptomyces clavifer Species Streptomycetaceae Bacteria UNPD*
NPO26162 Botrydium granulatum Species Botrydiaceae Eukaryota UNPD*
NPO23628 Imperata cylindrica Species Poaceae Eukaryota Rhizomes PMID[7714541]
NPO25871 Cryptolestes ferrugineus Species Laemophloeidae Eukaryota UNPD*
NPO23628.1 Imperata cylindrica var. major Varieties Poaceae Eukaryota TCMID*
NPO15398 Rhizopus stolonifer Species Rhizopodaceae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified Inhibition = 50 % 7714541

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC125570 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9724 High Similarity NPC473236
0.9658 High Similarity NPC136757
0.9655 High Similarity NPC477699
0.9645 High Similarity NPC27159
0.9577 High Similarity NPC223185
0.9574 High Similarity NPC477697
0.9574 High Similarity NPC470811
0.9574 High Similarity NPC477696
0.9448 High Similarity NPC668
0.9448 High Similarity NPC174512
0.9448 High Similarity NPC474965
0.9448 High Similarity NPC293757
0.9448 High Similarity NPC477695
0.9437 High Similarity NPC106920
0.9437 High Similarity NPC273657
0.9388 High Similarity NPC56184
0.932 High Similarity NPC477700
0.9315 High Similarity NPC477698
0.9315 High Similarity NPC145569
0.9315 High Similarity NPC216223
0.9296 High Similarity NPC470991
0.9257 High Similarity NPC476434
0.9195 High Similarity NPC178574
0.9195 High Similarity NPC65591
0.9189 High Similarity NPC164082
0.9189 High Similarity NPC32079
0.9172 High Similarity NPC477702
0.9161 High Similarity NPC100675
0.9149 High Similarity NPC209229
0.911 High Similarity NPC212890
0.9085 High Similarity NPC308976
0.9085 High Similarity NPC268718
0.9085 High Similarity NPC150943
0.9085 High Similarity NPC91634
0.9078 High Similarity NPC34103
0.9078 High Similarity NPC165155
0.9078 High Similarity NPC44245
0.9078 High Similarity NPC141765
0.9078 High Similarity NPC24490
0.9078 High Similarity NPC72796
0.9013 High Similarity NPC478055
0.9007 High Similarity NPC103197
0.9007 High Similarity NPC287504
0.9007 High Similarity NPC30009
0.9 High Similarity NPC95498
0.9 High Similarity NPC246566
0.8968 High Similarity NPC76687
0.8966 High Similarity NPC253481
0.8966 High Similarity NPC31751
0.8966 High Similarity NPC151423
0.8966 High Similarity NPC40237
0.8966 High Similarity NPC253722
0.8954 High Similarity NPC163527
0.8954 High Similarity NPC115281
0.8954 High Similarity NPC181168
0.8951 High Similarity NPC281780
0.8947 High Similarity NPC476642
0.8944 High Similarity NPC126409
0.8944 High Similarity NPC99572
0.8944 High Similarity NPC211386
0.891 High Similarity NPC14294
0.891 High Similarity NPC116759
0.8889 High Similarity NPC32373
0.8889 High Similarity NPC237946
0.8882 High Similarity NPC25127
0.8881 High Similarity NPC471988
0.8873 High Similarity NPC300776
0.8873 High Similarity NPC5310
0.8873 High Similarity NPC67247
0.8873 High Similarity NPC326095
0.8873 High Similarity NPC244983
0.8873 High Similarity NPC176814
0.8873 High Similarity NPC4982
0.8873 High Similarity NPC68779
0.8865 High Similarity NPC175067
0.8865 High Similarity NPC204215
0.8861 High Similarity NPC167231
0.8861 High Similarity NPC215802
0.8844 High Similarity NPC218841
0.8844 High Similarity NPC475000
0.8844 High Similarity NPC92693
0.8836 High Similarity NPC210354
0.8836 High Similarity NPC287124
0.8836 High Similarity NPC176586
0.8831 High Similarity NPC207584
0.8831 High Similarity NPC19947
0.8828 High Similarity NPC147379
0.8828 High Similarity NPC177868
0.8828 High Similarity NPC203351
0.8824 High Similarity NPC238834
0.8811 High Similarity NPC470990
0.8811 High Similarity NPC113295
0.8803 High Similarity NPC158331
0.8776 High Similarity NPC12728
0.8776 High Similarity NPC185071
0.8776 High Similarity NPC474288
0.8767 High Similarity NPC166137
0.8767 High Similarity NPC282291
0.8766 High Similarity NPC150227
0.875 High Similarity NPC91043
0.875 High Similarity NPC151425
0.8742 High Similarity NPC185498
0.8741 High Similarity NPC287745
0.8733 High Similarity NPC102934
0.8733 High Similarity NPC1580
0.8733 High Similarity NPC252402
0.8725 High Similarity NPC3982
0.8725 High Similarity NPC193779
0.8718 High Similarity NPC119910
0.8716 High Similarity NPC177644
0.8716 High Similarity NPC166884
0.8716 High Similarity NPC477701
0.8716 High Similarity NPC141569
0.8716 High Similarity NPC191158
0.8716 High Similarity NPC87883
0.871 High Similarity NPC190020
0.871 High Similarity NPC84935
0.871 High Similarity NPC77679
0.8707 High Similarity NPC52664
0.8701 High Similarity NPC186316
0.8701 High Similarity NPC79998
0.8701 High Similarity NPC199926
0.8693 High Similarity NPC245948
0.8693 High Similarity NPC474606
0.8693 High Similarity NPC245615
0.8693 High Similarity NPC299706
0.8693 High Similarity NPC115466
0.8693 High Similarity NPC61604
0.8684 High Similarity NPC210642
0.8684 High Similarity NPC303519
0.8684 High Similarity NPC62354
0.8684 High Similarity NPC475756
0.8684 High Similarity NPC13985
0.8667 High Similarity NPC221383
0.8667 High Similarity NPC208507
0.8667 High Similarity NPC299090
0.8667 High Similarity NPC283081
0.8667 High Similarity NPC143892
0.8667 High Similarity NPC472333
0.8662 High Similarity NPC100465
0.8662 High Similarity NPC27843
0.8662 High Similarity NPC228346
0.8662 High Similarity NPC288149
0.8662 High Similarity NPC152424
0.8662 High Similarity NPC40432
0.8662 High Similarity NPC7171
0.8662 High Similarity NPC115624
0.8662 High Similarity NPC158079
0.8662 High Similarity NPC161557
0.8662 High Similarity NPC115207
0.8654 High Similarity NPC76211
0.8649 High Similarity NPC298317
0.8649 High Similarity NPC255566
0.8636 High Similarity NPC477299
0.8634 High Similarity NPC179240
0.8627 High Similarity NPC471154
0.8627 High Similarity NPC75695
0.8627 High Similarity NPC267091
0.8621 High Similarity NPC11453
0.8621 High Similarity NPC90431
0.8616 High Similarity NPC475738
0.8601 High Similarity NPC207400
0.8601 High Similarity NPC181049
0.8601 High Similarity NPC4940
0.86 High Similarity NPC474054
0.86 High Similarity NPC213482
0.8599 High Similarity NPC96593
0.8591 High Similarity NPC114119
0.8591 High Similarity NPC470097
0.8591 High Similarity NPC471415
0.8582 High Similarity NPC54321
0.8582 High Similarity NPC328682
0.8582 High Similarity NPC281864
0.8581 High Similarity NPC131971
0.8581 High Similarity NPC82592
0.8581 High Similarity NPC38699
0.8581 High Similarity NPC67467
0.8581 High Similarity NPC16082
0.858 High Similarity NPC178737
0.8571 High Similarity NPC199773
0.8562 High Similarity NPC474039
0.8562 High Similarity NPC243891
0.8562 High Similarity NPC96501
0.8553 High Similarity NPC474347
0.8553 High Similarity NPC474903
0.8553 High Similarity NPC474393
0.8543 High Similarity NPC304687
0.8543 High Similarity NPC104024
0.8543 High Similarity NPC80230
0.8543 High Similarity NPC65574
0.8543 High Similarity NPC101755
0.8533 High Similarity NPC474982
0.8533 High Similarity NPC474158
0.8533 High Similarity NPC53884
0.8533 High Similarity NPC258671
0.8531 High Similarity NPC474017
0.8531 High Similarity NPC469480
0.8526 High Similarity NPC163635
0.8526 High Similarity NPC165483
0.8526 High Similarity NPC227062

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC125570 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9145 High Similarity NPD6234 Discontinued
0.8889 High Similarity NPD4967 Phase 2
0.8889 High Similarity NPD4966 Approved
0.8889 High Similarity NPD4965 Approved
0.8742 High Similarity NPD7228 Approved
0.8693 High Similarity NPD37 Approved
0.8392 Intermediate Similarity NPD3027 Phase 3
0.8291 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8217 Intermediate Similarity NPD1934 Approved
0.8199 Intermediate Similarity NPD7199 Phase 2
0.8193 Intermediate Similarity NPD7240 Approved
0.8176 Intermediate Similarity NPD3882 Suspended
0.8171 Intermediate Similarity NPD3818 Discontinued
0.8098 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.805 Intermediate Similarity NPD2801 Approved
0.805 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8047 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.8037 Intermediate Similarity NPD6232 Discontinued
0.8 Intermediate Similarity NPD3817 Phase 2
0.8 Intermediate Similarity NPD7473 Discontinued
0.7939 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD6166 Phase 2
0.7935 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7919 Intermediate Similarity NPD230 Phase 1
0.7895 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7857 Intermediate Similarity NPD7074 Phase 3
0.7852 Intermediate Similarity NPD1613 Approved
0.7852 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7826 Intermediate Similarity NPD1465 Phase 2
0.7824 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7809 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7806 Intermediate Similarity NPD6190 Approved
0.7805 Intermediate Similarity NPD5494 Approved
0.7798 Intermediate Similarity NPD7054 Approved
0.7785 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7771 Intermediate Similarity NPD2533 Approved
0.7771 Intermediate Similarity NPD2534 Approved
0.7771 Intermediate Similarity NPD2532 Approved
0.7755 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7751 Intermediate Similarity NPD7472 Approved
0.7742 Intermediate Similarity NPD4110 Phase 3
0.7742 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7718 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7707 Intermediate Similarity NPD1511 Approved
0.7706 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7703 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD7075 Discontinued
0.7682 Intermediate Similarity NPD6355 Discontinued
0.764 Intermediate Similarity NPD4380 Phase 2
0.7637 Intermediate Similarity NPD7680 Approved
0.761 Intermediate Similarity NPD1512 Approved
0.7602 Intermediate Similarity NPD6797 Phase 2
0.7588 Intermediate Similarity NPD5844 Phase 1
0.7561 Intermediate Similarity NPD5402 Approved
0.7558 Intermediate Similarity NPD7251 Discontinued
0.7558 Intermediate Similarity NPD6559 Discontinued
0.7558 Intermediate Similarity NPD7685 Pre-registration
0.7516 Intermediate Similarity NPD1653 Approved
0.7516 Intermediate Similarity NPD4628 Phase 3
0.7514 Intermediate Similarity NPD7808 Phase 3
0.75 Intermediate Similarity NPD7819 Suspended
0.75 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD6799 Approved
0.7484 Intermediate Similarity NPD2935 Discontinued
0.7483 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.747 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7439 Intermediate Similarity NPD6801 Discontinued
0.7436 Intermediate Similarity NPD7266 Discontinued
0.7434 Intermediate Similarity NPD6233 Phase 2
0.7423 Intermediate Similarity NPD6599 Discontinued
0.7415 Intermediate Similarity NPD1608 Approved
0.7405 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7396 Intermediate Similarity NPD7229 Phase 3
0.7386 Intermediate Similarity NPD4060 Phase 1
0.7378 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7372 Intermediate Similarity NPD2438 Suspended
0.7368 Intermediate Similarity NPD6798 Discontinued
0.7365 Intermediate Similarity NPD2983 Phase 2
0.7365 Intermediate Similarity NPD2982 Phase 2
0.736 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD3926 Phase 2
0.7353 Intermediate Similarity NPD5242 Approved
0.7351 Intermediate Similarity NPD4908 Phase 1
0.7349 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7349 Intermediate Similarity NPD5353 Approved
0.7347 Intermediate Similarity NPD3705 Approved
0.7346 Intermediate Similarity NPD5403 Approved
0.7338 Intermediate Similarity NPD447 Suspended
0.7337 Intermediate Similarity NPD8127 Discontinued
0.7333 Intermediate Similarity NPD5647 Approved
0.7329 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7329 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD6004 Phase 3
0.7325 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD6002 Phase 3
0.7325 Intermediate Similarity NPD6005 Phase 3
0.7324 Intermediate Similarity NPD5283 Phase 1
0.7321 Intermediate Similarity NPD919 Approved
0.7308 Intermediate Similarity NPD1510 Phase 2
0.7308 Intermediate Similarity NPD7033 Discontinued
0.7305 Intermediate Similarity NPD7768 Phase 2
0.7297 Intermediate Similarity NPD2981 Phase 2
0.7296 Intermediate Similarity NPD3750 Approved
0.729 Intermediate Similarity NPD6653 Approved
0.7285 Intermediate Similarity NPD3018 Phase 2
0.7278 Intermediate Similarity NPD7296 Approved
0.7278 Intermediate Similarity NPD1549 Phase 2
0.7273 Intermediate Similarity NPD7411 Suspended
0.7273 Intermediate Similarity NPD3620 Phase 2
0.7273 Intermediate Similarity NPD943 Approved
0.7273 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD1240 Approved
0.7267 Intermediate Similarity NPD4357 Discontinued
0.7261 Intermediate Similarity NPD1551 Phase 2
0.7261 Intermediate Similarity NPD6099 Approved
0.7261 Intermediate Similarity NPD6100 Approved
0.7255 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD6959 Discontinued
0.723 Intermediate Similarity NPD1610 Phase 2
0.7222 Intermediate Similarity NPD5401 Approved
0.7211 Intermediate Similarity NPD17 Approved
0.7208 Intermediate Similarity NPD4062 Phase 3
0.72 Intermediate Similarity NPD1283 Approved
0.7193 Intermediate Similarity NPD5710 Approved
0.7193 Intermediate Similarity NPD5711 Approved
0.7193 Intermediate Similarity NPD3787 Discontinued
0.719 Intermediate Similarity NPD7095 Approved
0.7188 Intermediate Similarity NPD8166 Discontinued
0.7188 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7184 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7183 Intermediate Similarity NPD228 Approved
0.7181 Intermediate Similarity NPD9269 Phase 2
0.7179 Intermediate Similarity NPD1607 Approved
0.7171 Intermediate Similarity NPD2861 Phase 2
0.7171 Intermediate Similarity NPD9494 Approved
0.717 Intermediate Similarity NPD5958 Discontinued
0.7161 Intermediate Similarity NPD2979 Phase 3
0.716 Intermediate Similarity NPD3749 Approved
0.7152 Intermediate Similarity NPD2796 Approved
0.7152 Intermediate Similarity NPD2797 Approved
0.7151 Intermediate Similarity NPD8434 Phase 2
0.7143 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD3764 Approved
0.7135 Intermediate Similarity NPD1247 Approved
0.7135 Intermediate Similarity NPD7827 Phase 1
0.7125 Intermediate Similarity NPD2800 Approved
0.711 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7089 Intermediate Similarity NPD2799 Discontinued
0.7083 Intermediate Similarity NPD8455 Phase 2
0.7066 Intermediate Similarity NPD6386 Approved
0.7066 Intermediate Similarity NPD6385 Approved
0.7063 Intermediate Similarity NPD4534 Discontinued
0.7048 Intermediate Similarity NPD6055 Clinical (unspecified phase)
0.7042 Intermediate Similarity NPD3021 Approved
0.7042 Intermediate Similarity NPD3022 Approved
0.7041 Intermediate Similarity NPD6374 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7032 Intermediate Similarity NPD3268 Approved
0.703 Intermediate Similarity NPD920 Approved
0.7029 Intermediate Similarity NPD3751 Discontinued
0.7027 Intermediate Similarity NPD5585 Approved
0.7025 Intermediate Similarity NPD7097 Phase 1
0.7021 Intermediate Similarity NPD5005 Approved
0.7021 Intermediate Similarity NPD5006 Approved
0.702 Intermediate Similarity NPD4749 Approved
0.7012 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7012 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7007 Intermediate Similarity NPD5536 Phase 2
0.7006 Intermediate Similarity NPD7028 Phase 2
0.7 Intermediate Similarity NPD5762 Approved
0.7 Intermediate Similarity NPD1535 Discovery
0.7 Intermediate Similarity NPD422 Phase 1
0.7 Intermediate Similarity NPD5763 Approved
0.7 Intermediate Similarity NPD1281 Approved
0.6995 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6994 Remote Similarity NPD7315 Approved
0.6987 Remote Similarity NPD6663 Approved
0.6983 Remote Similarity NPD8312 Approved
0.6983 Remote Similarity NPD8313 Approved
0.6981 Remote Similarity NPD3748 Approved
0.6977 Remote Similarity NPD6746 Phase 2
0.697 Remote Similarity NPD1940 Clinical (unspecified phase)
0.6959 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6959 Remote Similarity NPD1548 Phase 1
0.6959 Remote Similarity NPD1894 Discontinued
0.6954 Remote Similarity NPD1481 Phase 2
0.6946 Remote Similarity NPD3226 Approved
0.6946 Remote Similarity NPD3455 Phase 2
0.6937 Remote Similarity NPD6032 Approved
0.6933 Remote Similarity NPD3847 Discontinued
0.6927 Remote Similarity NPD7549 Discontinued
0.6923 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6914 Remote Similarity NPD6674 Discontinued
0.6914 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6914 Remote Similarity NPD1652 Phase 2

Structure

External Identifiers

PubChem CID   10001150
ChEMBL   CHEMBL460859
ZINC  

Physicochemical Properties

Molecular Weight:  402.13
ALogP:  -1.8612
MLogP:  2.89
XLogP:  0.929
# Rotatable Bonds:  10
Polar Surface Area:  103.68
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs