Natural Product: NPC119910

Natural Product ID:  NPC119910
Common Name:   4-Acetyl-4-Demethyl-Podophyllotoxin
IUPAC Name:   [4-[(5R,5aR,8aR,9R)-5-hydroxy-8-oxo-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[6,5-f][1,3]benzodioxol-9-yl]-2,6-dimethoxyphenyl] acetate
Synonyms:  
Molecular Formula:   C23H22O9
Standard InCHIKey:  FPGSRCHTAOFUND-MGNXDGSBSA-N
Standard InCHI:  InChI=1S/C23H22O9/c1-10(24)32-22-17(27-2)4-11(5-18(22)28-3)19-12-6-15-16(31-9-30-15)7-13(12)21(25)14-8-29-23(26)20(14)19/h4-7,14,19-21,25H,8-9H2,1-3H3/t14-,19+,20-,21-/m0/s1
Canonical SMILES:  COc1cc(cc(c1OC(=O)C)OC)[C@H]1[C@H]2C(=O)OC[C@@H]2[C@H](c2c1cc1OCOc1c2)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO10903 Sinopodophyllum hexandrum Species Berberidaceae Eukaryota UNPD*
NPO14752 Sinopodophyllum emodi Species Berberidaceae Eukaryota roots and rhizomes PMID[21570846]
NPO6893 Dimorphotheca sinuata Species Asteraceae Eukaryota UNPD*
NPO11163 Methylobacterium organophilum Species Methylobacteriaceae Bacteria UNPD*
NPO11417 Gesneria cardinalis Species Crambidae Eukaryota UNPD*
NPO3025 Schefflera capitata Species Araliaceae Eukaryota UNPD*
NPO4464 Senecio mexicanus Species Asteraceae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell Line HeLa Homo sapiens IC50 = 76 nM 21570846
NPT91 Cell Line KB Homo sapiens IC50 = 50 nM 21570846

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC119910 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9801 High Similarity NPC32373
0.9801 High Similarity NPC237946
0.9737 High Similarity NPC19947
0.9737 High Similarity NPC207584
0.961 High Similarity NPC150943
0.961 High Similarity NPC91634
0.961 High Similarity NPC268718
0.9603 High Similarity NPC245948
0.9548 High Similarity NPC288149
0.9548 High Similarity NPC115624
0.949 High Similarity NPC222531
0.9484 High Similarity NPC96593
0.947 High Similarity NPC210642
0.947 High Similarity NPC13985
0.9427 High Similarity NPC14294
0.9427 High Similarity NPC116759
0.9423 High Similarity NPC152424
0.9423 High Similarity NPC100465
0.9355 High Similarity NPC163527
0.9355 High Similarity NPC181168
0.9355 High Similarity NPC115281
0.9286 High Similarity NPC103197
0.9286 High Similarity NPC273578
0.9286 High Similarity NPC30009
0.9276 High Similarity NPC149505
0.925 High Similarity NPC185498
0.9221 High Similarity NPC178574
0.9221 High Similarity NPC65591
0.9205 High Similarity NPC104024
0.9205 High Similarity NPC80230
0.9205 High Similarity NPC65574
0.9205 High Similarity NPC101755
0.9205 High Similarity NPC304687
0.9187 High Similarity NPC306475
0.9156 High Similarity NPC56184
0.9136 High Similarity NPC179240
0.9085 High Similarity NPC177476
0.9085 High Similarity NPC262455
0.9085 High Similarity NPC477698
0.9038 High Similarity NPC136757
0.9038 High Similarity NPC473425
0.8968 High Similarity NPC164082
0.8968 High Similarity NPC303519
0.8961 High Similarity NPC668
0.8961 High Similarity NPC293757
0.8961 High Similarity NPC174512
0.8961 High Similarity NPC477695
0.8961 High Similarity NPC474965
0.8951 High Similarity NPC474042
0.8951 High Similarity NPC174734
0.891 High Similarity NPC477699
0.8903 High Similarity NPC24425
0.8903 High Similarity NPC473989
0.8896 High Similarity NPC304821
0.8874 High Similarity NPC40237
0.8874 High Similarity NPC287124
0.8874 High Similarity NPC151423
0.8854 High Similarity NPC473236
0.8846 High Similarity NPC477700
0.8841 High Similarity NPC117911
0.8839 High Similarity NPC216223
0.8839 High Similarity NPC145569
0.8805 High Similarity NPC473323
0.8805 High Similarity NPC478055
0.8797 High Similarity NPC312763
0.8797 High Similarity NPC178195
0.8797 High Similarity NPC348849
0.8782 High Similarity NPC229882
0.8782 High Similarity NPC158635
0.8774 High Similarity NPC316676
0.8774 High Similarity NPC262804
0.8774 High Similarity NPC325720
0.8774 High Similarity NPC40654
0.8766 High Similarity NPC3982
0.8766 High Similarity NPC212890
0.8758 High Similarity NPC474770
0.8758 High Similarity NPC218841
0.8758 High Similarity NPC475000
0.8758 High Similarity NPC166884
0.8758 High Similarity NPC141569
0.8758 High Similarity NPC92693
0.8758 High Similarity NPC477701
0.875 High Similarity NPC210354
0.875 High Similarity NPC176586
0.8742 High Similarity NPC186316
0.8742 High Similarity NPC238834
0.8735 High Similarity NPC474075
0.8735 High Similarity NPC129930
0.8735 High Similarity NPC114550
0.8735 High Similarity NPC471921
0.8735 High Similarity NPC20114
0.8735 High Similarity NPC312006
0.8735 High Similarity NPC471920
0.8735 High Similarity NPC471922
0.8735 High Similarity NPC292712
0.8734 High Similarity NPC245615
0.8734 High Similarity NPC115466
0.8734 High Similarity NPC299706
0.8734 High Similarity NPC61604
0.8726 High Similarity NPC32079
0.8718 High Similarity NPC125570
0.8701 High Similarity NPC477702
0.8696 High Similarity NPC173726
0.8696 High Similarity NPC474043
0.8696 High Similarity NPC241600
0.8693 High Similarity NPC474288
0.869 High Similarity NPC23593
0.8688 High Similarity NPC29727
0.8683 High Similarity NPC184624
0.8671 High Similarity NPC302610
0.8667 High Similarity NPC167231
0.8667 High Similarity NPC79322
0.8667 High Similarity NPC215802
0.8654 High Similarity NPC477879
0.865 High Similarity NPC116838
0.865 High Similarity NPC22130
0.8645 High Similarity NPC193779
0.8642 High Similarity NPC470637
0.8642 High Similarity NPC63061
0.8636 High Similarity NPC177644
0.8636 High Similarity NPC191158
0.8631 High Similarity NPC107739
0.8625 High Similarity NPC234730
0.8618 High Similarity NPC226547
0.8616 High Similarity NPC24562
0.8616 High Similarity NPC474606
0.8608 High Similarity NPC474975
0.8608 High Similarity NPC475756
0.8598 High Similarity NPC475865
0.8589 High Similarity NPC191352
0.8589 High Similarity NPC239890
0.8589 High Similarity NPC258322
0.8589 High Similarity NPC209411
0.8588 High Similarity NPC236089
0.8581 High Similarity NPC180953
0.8581 High Similarity NPC475868
0.858 High Similarity NPC473713
0.858 High Similarity NPC263955
0.858 High Similarity NPC196771
0.8571 High Similarity NPC477696
0.8571 High Similarity NPC163635
0.8571 High Similarity NPC470811
0.8571 High Similarity NPC477697
0.8563 High Similarity NPC91043
0.8562 High Similarity NPC198461
0.8554 High Similarity NPC471180
0.8554 High Similarity NPC311912
0.8553 High Similarity NPC476434
0.8553 High Similarity NPC471154
0.8543 High Similarity NPC11453
0.8537 High Similarity NPC249070
0.8535 High Similarity NPC130449
0.8535 High Similarity NPC71726
0.8535 High Similarity NPC248132
0.8529 High Similarity NPC29587
0.8529 High Similarity NPC35266
0.8526 High Similarity NPC321696
0.8526 High Similarity NPC321958
0.8526 High Similarity NPC33832
0.8521 High Similarity NPC193377
0.8516 High Similarity NPC172171
0.8516 High Similarity NPC239254
0.8512 High Similarity NPC38438
0.8509 High Similarity NPC188962
0.8509 High Similarity NPC42871
0.8509 High Similarity NPC202249
0.8503 High Similarity NPC88557
0.8497 Intermediate Similarity NPC46591
0.8494 Intermediate Similarity NPC83049
0.8494 Intermediate Similarity NPC320471
0.8494 Intermediate Similarity NPC471923
0.8494 Intermediate Similarity NPC118162
0.8487 Intermediate Similarity NPC283949
0.8481 Intermediate Similarity NPC240521
0.8481 Intermediate Similarity NPC85141
0.8481 Intermediate Similarity NPC55158
0.8481 Intermediate Similarity NPC286235
0.8481 Intermediate Similarity NPC51328
0.848 Intermediate Similarity NPC161609
0.848 Intermediate Similarity NPC275690
0.8477 Intermediate Similarity NPC72796
0.8477 Intermediate Similarity NPC150534
0.8477 Intermediate Similarity NPC44245
0.8476 Intermediate Similarity NPC177100
0.8476 Intermediate Similarity NPC139540
0.8476 Intermediate Similarity NPC109061
0.8471 Intermediate Similarity NPC116019
0.8462 Intermediate Similarity NPC327651
0.8462 Intermediate Similarity NPC474158
0.8462 Intermediate Similarity NPC318286
0.8457 Intermediate Similarity NPC228357
0.8457 Intermediate Similarity NPC473900
0.8457 Intermediate Similarity NPC115123
0.8457 Intermediate Similarity NPC165483
0.8457 Intermediate Similarity NPC239113
0.8452 Intermediate Similarity NPC273657
0.8452 Intermediate Similarity NPC106920
0.8452 Intermediate Similarity NPC76415
0.8452 Intermediate Similarity NPC324962
0.8452 Intermediate Similarity NPC218510

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC119910 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9801 High Similarity NPD4967 Phase 2
0.9801 High Similarity NPD4966 Approved
0.9801 High Similarity NPD4965 Approved
0.9603 High Similarity NPD37 Approved
0.9545 High Similarity NPD6234 Discontinued
0.925 High Similarity NPD7228 Approved
0.8938 High Similarity NPD7199 Phase 2
0.8909 High Similarity NPD7240 Approved
0.8712 High Similarity NPD7184 Clinical (unspecified phase)
0.8314 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.8284 Intermediate Similarity NPD5844 Phase 1
0.8268 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.8118 Intermediate Similarity NPD3818 Discontinued
0.8113 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.8087 Intermediate Similarity NPD7680 Approved
0.8057 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7988 Intermediate Similarity NPD6232 Discontinued
0.7963 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7953 Intermediate Similarity NPD7473 Discontinued
0.7929 Intermediate Similarity NPD8127 Discontinued
0.7862 Intermediate Similarity NPD6674 Discontinued
0.7829 Intermediate Similarity NPD6559 Discontinued
0.7816 Intermediate Similarity NPD7074 Phase 3
0.7805 Intermediate Similarity NPD1653 Approved
0.7784 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7784 Intermediate Similarity NPD1465 Phase 2
0.7778 Intermediate Similarity NPD7229 Phase 3
0.7759 Intermediate Similarity NPD7054 Approved
0.7714 Intermediate Similarity NPD7472 Approved
0.7679 Intermediate Similarity NPD8455 Phase 2
0.7661 Intermediate Similarity NPD5494 Approved
0.7633 Intermediate Similarity NPD3817 Phase 2
0.7622 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD1934 Approved
0.7613 Intermediate Similarity NPD3027 Phase 3
0.7593 Intermediate Similarity NPD4110 Phase 3
0.7593 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7586 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7586 Intermediate Similarity NPD6166 Phase 2
0.7586 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7584 Intermediate Similarity NPD7808 Phase 3
0.758 Intermediate Similarity NPD1613 Approved
0.758 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7574 Intermediate Similarity NPD7819 Suspended
0.7574 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7572 Intermediate Similarity NPD3787 Discontinued
0.7571 Intermediate Similarity NPD6797 Phase 2
0.7571 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.755 Intermediate Similarity NPD3705 Approved
0.7544 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7542 Intermediate Similarity NPD8312 Approved
0.7542 Intermediate Similarity NPD8313 Approved
0.7528 Intermediate Similarity NPD7251 Discontinued
0.7527 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7515 Intermediate Similarity NPD2532 Approved
0.7515 Intermediate Similarity NPD2534 Approved
0.7515 Intermediate Similarity NPD2533 Approved
0.7485 Intermediate Similarity NPD3882 Suspended
0.7485 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7471 Intermediate Similarity NPD2801 Approved
0.747 Intermediate Similarity NPD6273 Approved
0.7468 Intermediate Similarity NPD4140 Approved
0.7456 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7438 Intermediate Similarity NPD7097 Phase 1
0.743 Intermediate Similarity NPD7685 Pre-registration
0.7421 Intermediate Similarity NPD6355 Discontinued
0.7414 Intermediate Similarity NPD6959 Discontinued
0.7407 Intermediate Similarity NPD6005 Phase 3
0.7407 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD6002 Phase 3
0.7407 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD6004 Phase 3
0.7401 Intermediate Similarity NPD3751 Discontinued
0.7396 Intermediate Similarity NPD7028 Phase 2
0.7385 Intermediate Similarity NPD7827 Phase 1
0.7378 Intermediate Similarity NPD4628 Phase 3
0.7378 Intermediate Similarity NPD3750 Approved
0.7372 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.736 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD4060 Phase 1
0.7351 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7346 Intermediate Similarity NPD6099 Approved
0.7346 Intermediate Similarity NPD6100 Approved
0.7346 Intermediate Similarity NPD2438 Suspended
0.7342 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7342 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7342 Intermediate Similarity NPD6798 Discontinued
0.7341 Intermediate Similarity NPD7075 Discontinued
0.7337 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD3226 Approved
0.7333 Intermediate Similarity NPD6190 Approved
0.7326 Intermediate Similarity NPD5402 Approved
0.7325 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7325 Intermediate Similarity NPD4908 Phase 1
0.731 Intermediate Similarity NPD6801 Discontinued
0.7301 Intermediate Similarity NPD7266 Discontinued
0.7301 Intermediate Similarity NPD5763 Approved
0.7301 Intermediate Similarity NPD5762 Approved
0.7296 Intermediate Similarity NPD8032 Phase 2
0.7296 Intermediate Similarity NPD6233 Phase 2
0.7267 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7256 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7251 Intermediate Similarity NPD7411 Suspended
0.725 Intermediate Similarity NPD3620 Phase 2
0.725 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7244 Intermediate Similarity NPD2797 Approved
0.7241 Intermediate Similarity NPD3749 Approved
0.7228 Intermediate Similarity NPD8434 Phase 2
0.7225 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7205 Intermediate Similarity NPD5124 Phase 1
0.7205 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD919 Approved
0.7193 Intermediate Similarity NPD4380 Phase 2
0.7188 Intermediate Similarity NPD5005 Approved
0.7188 Intermediate Similarity NPD5006 Approved
0.7184 Intermediate Similarity NPD7768 Phase 2
0.7179 Intermediate Similarity NPD1283 Approved
0.7178 Intermediate Similarity NPD3748 Approved
0.7178 Intermediate Similarity NPD7033 Discontinued
0.717 Intermediate Similarity NPD4625 Phase 3
0.7166 Intermediate Similarity NPD7296 Approved
0.7161 Intermediate Similarity NPD1608 Approved
0.716 Intermediate Similarity NPD1940 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD2979 Phase 3
0.7143 Intermediate Similarity NPD8151 Discontinued
0.7143 Intermediate Similarity NPD1511 Approved
0.7135 Intermediate Similarity NPD7458 Discontinued
0.7125 Intermediate Similarity NPD3268 Approved
0.7125 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD5403 Approved
0.7108 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7104 Intermediate Similarity NPD7549 Discontinued
0.7101 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD447 Suspended
0.7099 Intermediate Similarity NPD5735 Approved
0.7099 Intermediate Similarity NPD230 Phase 1
0.7097 Intermediate Similarity NPD1610 Phase 2
0.7093 Intermediate Similarity NPD6599 Discontinued
0.7081 Intermediate Similarity NPD6663 Approved
0.7071 Intermediate Similarity NPD7783 Phase 2
0.7071 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7068 Intermediate Similarity NPD4420 Approved
0.7063 Intermediate Similarity NPD7095 Approved
0.7059 Intermediate Similarity NPD1512 Approved
0.7055 Intermediate Similarity NPD6653 Approved
0.7049 Intermediate Similarity NPD7039 Approved
0.7049 Intermediate Similarity NPD7038 Approved
0.7044 Intermediate Similarity NPD2861 Phase 2
0.7041 Intermediate Similarity NPD6799 Approved
0.7039 Intermediate Similarity NPD3926 Phase 2
0.7019 Intermediate Similarity NPD3764 Approved
0.7013 Intermediate Similarity NPD1357 Approved
0.7006 Intermediate Similarity NPD4749 Approved
0.7006 Intermediate Similarity NPD1652 Phase 2
0.7 Intermediate Similarity NPD5401 Approved
0.7 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.6994 Remote Similarity NPD1933 Approved
0.6988 Remote Similarity NPD2346 Discontinued
0.6988 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6988 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6987 Remote Similarity NPD1091 Approved
0.6987 Remote Similarity NPD1281 Approved
0.6983 Remote Similarity NPD5711 Approved
0.6983 Remote Similarity NPD5710 Approved
0.6982 Remote Similarity NPD5058 Phase 3
0.6981 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6974 Remote Similarity NPD7435 Discontinued
0.6968 Remote Similarity NPD17 Approved
0.6966 Remote Similarity NPD6746 Phase 2
0.6964 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6964 Remote Similarity NPD8166 Discontinued
0.6949 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6946 Remote Similarity NPD1549 Phase 2
0.6944 Remote Similarity NPD5242 Approved
0.6937 Remote Similarity NPD3018 Phase 2
0.6937 Remote Similarity NPD5736 Approved
0.6932 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6932 Remote Similarity NPD5353 Approved
0.6928 Remote Similarity NPD4476 Approved
0.6928 Remote Similarity NPD1551 Phase 2
0.6928 Remote Similarity NPD4477 Approved
0.6928 Remote Similarity NPD2796 Approved
0.6928 Remote Similarity NPD2935 Discontinued
0.6927 Remote Similarity NPD2973 Approved
0.6927 Remote Similarity NPD2975 Approved
0.6927 Remote Similarity NPD1247 Approved
0.6927 Remote Similarity NPD2974 Approved
0.6923 Remote Similarity NPD5084 Clinical (unspecified phase)
0.6919 Remote Similarity NPD920 Approved
0.6915 Remote Similarity NPD6841 Approved
0.6915 Remote Similarity NPD6842 Approved
0.6915 Remote Similarity NPD6843 Phase 3
0.6914 Remote Similarity NPD7985 Registered
0.6907 Remote Similarity NPD6781 Approved
0.6907 Remote Similarity NPD6778 Approved
0.6907 Remote Similarity NPD6782 Approved
0.6907 Remote Similarity NPD6779 Approved

Structure

External Identifiers

PubChem CID   53359026
ChEMBL   CHEMBL1778157
ZINC  

Physicochemical Properties

Molecular Weight:  442.13
ALogP:  -1.53
MLogP:  3
XLogP:  1.48
# Rotatable Bonds:  9
Polar Surface Area:  109.75
# H-Bond Aceptor:  4
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  32

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs