Natural Product: NPC139540

Natural Product ID:  NPC139540
Common Name:   Cinchonain I B
IUPAC Name:   (1S,8R,9R)-1,9-bis(3,4-dihydroxyphenyl)-6,8-dihydroxy-1,2,7,8,9,10-hexahydrobenzo[f]chromen-3-one
Synonyms:  
Molecular Formula:   C25H22O8
Standard InCHIKey:  DKTDHUGOEJFFSN-BIENJYKASA-N
Standard InCHI:  InChI=1S/C25H22O8/c26-17-3-1-11(5-21(17)30)13-7-16-15(8-19(13)28)20(29)10-23-25(16)14(9-24(32)33-23)12-2-4-18(27)22(31)6-12/h1-6,10,13-14,19,26-31H,7-9H2/t13-,14+,19-/m1/s1
Canonical SMILES:  O=C1Oc2cc(O)c3c(c2[C@@H](C1)c1ccc(c(c1)O)O)C[C@@H]([C@@H](C3)O)c1ccc(c(c1)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO23925 Iryanthera megistophylla Species Myristicaceae Eukaryota PMID[12398535]
NPO25611 Smilax china Species Smilacaceae Eukaryota TM-MC*
NPO7132 Smilax glabra Species Smilacaceae Eukaryota TM-MC*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1105 Organism Potato virus X Potato virus X Inhibition = 100 % 12398535
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 MIC = 20 ug/ml 12398535
NPT20 Organism Candida albicans Candida albicans MIC = 150 ug/ml 12398535

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC139540 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC177100
0.961 High Similarity NPC98083
0.961 High Similarity NPC7543
0.961 High Similarity NPC24339
0.961 High Similarity NPC166456
0.961 High Similarity NPC94220
0.9487 High Similarity NPC109061
0.9481 High Similarity NPC165483
0.9371 High Similarity NPC9309
0.9363 High Similarity NPC124747
0.9363 High Similarity NPC155754
0.8938 High Similarity NPC24164
0.8909 High Similarity NPC65333
0.8902 High Similarity NPC300307
0.8868 High Similarity NPC318432
0.8861 High Similarity NPC268484
0.8855 High Similarity NPC98583
0.8827 High Similarity NPC55121
0.8817 High Similarity NPC53680
0.8817 High Similarity NPC208797
0.8812 High Similarity NPC114179
0.8812 High Similarity NPC156818
0.8812 High Similarity NPC68324
0.8812 High Similarity NPC289322
0.8812 High Similarity NPC160512
0.8812 High Similarity NPC38779
0.8797 High Similarity NPC223720
0.8797 High Similarity NPC178574
0.8797 High Similarity NPC65591
0.8795 High Similarity NPC4200
0.8795 High Similarity NPC100251
0.878 High Similarity NPC171985
0.878 High Similarity NPC224851
0.878 High Similarity NPC320741
0.8774 High Similarity NPC58190
0.8774 High Similarity NPC70409
0.8774 High Similarity NPC263940
0.8774 High Similarity NPC170103
0.8774 High Similarity NPC18185
0.8774 High Similarity NPC204770
0.8774 High Similarity NPC82917
0.8774 High Similarity NPC202742
0.8774 High Similarity NPC108811
0.8774 High Similarity NPC262911
0.8774 High Similarity NPC294558
0.8774 High Similarity NPC236202
0.875 High Similarity NPC300845
0.875 High Similarity NPC88803
0.875 High Similarity NPC250436
0.875 High Similarity NPC291948
0.875 High Similarity NPC104983
0.8742 High Similarity NPC8712
0.8735 High Similarity NPC180768
0.8735 High Similarity NPC91043
0.8727 High Similarity NPC473818
0.8721 High Similarity NPC105591
0.8718 High Similarity NPC20757
0.8718 High Similarity NPC227516
0.8718 High Similarity NPC142863
0.8712 High Similarity NPC174311
0.871 High Similarity NPC96576
0.8706 High Similarity NPC125352
0.8704 High Similarity NPC53889
0.8696 High Similarity NPC36077
0.8688 High Similarity NPC292385
0.8688 High Similarity NPC125709
0.8683 High Similarity NPC289396
0.8683 High Similarity NPC81332
0.8683 High Similarity NPC212038
0.8683 High Similarity NPC186847
0.8683 High Similarity NPC271848
0.8683 High Similarity NPC257667
0.8683 High Similarity NPC262580
0.8683 High Similarity NPC472454
0.8679 High Similarity NPC474656
0.8675 High Similarity NPC188079
0.8675 High Similarity NPC107627
0.8667 High Similarity NPC471823
0.8662 High Similarity NPC211561
0.8655 High Similarity NPC123259
0.8655 High Similarity NPC129533
0.865 High Similarity NPC142252
0.8647 High Similarity NPC80956
0.8642 High Similarity NPC87317
0.8642 High Similarity NPC36354
0.8639 High Similarity NPC297574
0.8627 High Similarity NPC178054
0.8623 High Similarity NPC313304
0.8616 High Similarity NPC44192
0.8616 High Similarity NPC469944
0.8616 High Similarity NPC226108
0.8616 High Similarity NPC272552
0.8616 High Similarity NPC46283
0.8616 High Similarity NPC134911
0.8616 High Similarity NPC322899
0.8614 High Similarity NPC215802
0.8614 High Similarity NPC167231
0.8608 High Similarity NPC477612
0.8606 High Similarity NPC142614
0.8606 High Similarity NPC471788
0.8598 High Similarity NPC192258
0.8598 High Similarity NPC12326
0.8598 High Similarity NPC476200
0.8598 High Similarity NPC476371
0.8598 High Similarity NPC476372
0.8598 High Similarity NPC140346
0.859 High Similarity NPC268515
0.859 High Similarity NPC40222
0.8589 High Similarity NPC321399
0.8589 High Similarity NPC292863
0.8589 High Similarity NPC184326
0.8589 High Similarity NPC24627
0.8581 High Similarity NPC15659
0.8581 High Similarity NPC304894
0.8571 High Similarity NPC155015
0.8571 High Similarity NPC142479
0.8563 High Similarity NPC269046
0.8563 High Similarity NPC475212
0.8562 High Similarity NPC306267
0.8562 High Similarity NPC20050
0.8554 High Similarity NPC13481
0.8554 High Similarity NPC207575
0.8545 High Similarity NPC476295
0.8545 High Similarity NPC121290
0.8545 High Similarity NPC290160
0.8545 High Similarity NPC67959
0.8545 High Similarity NPC116759
0.8545 High Similarity NPC14294
0.8545 High Similarity NPC45943
0.8538 High Similarity NPC473785
0.8537 High Similarity NPC18380
0.8537 High Similarity NPC186228
0.8537 High Similarity NPC137232
0.8537 High Similarity NPC97812
0.8529 High Similarity NPC67629
0.8529 High Similarity NPC79736
0.8528 High Similarity NPC210459
0.8528 High Similarity NPC117418
0.8528 High Similarity NPC195167
0.8528 High Similarity NPC85121
0.8528 High Similarity NPC53545
0.8516 High Similarity NPC173203
0.8516 High Similarity NPC163508
0.8512 High Similarity NPC102277
0.8512 High Similarity NPC476365
0.8512 High Similarity NPC279209
0.8509 High Similarity NPC62903
0.8509 High Similarity NPC7178
0.8506 High Similarity NPC265075
0.8506 High Similarity NPC237202
0.8503 High Similarity NPC185498
0.8503 High Similarity NPC474024
0.8503 High Similarity NPC217781
0.8503 High Similarity NPC260266
0.85 High Similarity NPC279406
0.85 High Similarity NPC226809
0.85 High Similarity NPC476391
0.8497 Intermediate Similarity NPC231254
0.8497 Intermediate Similarity NPC32630
0.8494 Intermediate Similarity NPC162169
0.8494 Intermediate Similarity NPC222531
0.8494 Intermediate Similarity NPC166851
0.8488 Intermediate Similarity NPC117668
0.8488 Intermediate Similarity NPC8940
0.8485 Intermediate Similarity NPC477841
0.8485 Intermediate Similarity NPC219927
0.8485 Intermediate Similarity NPC476247
0.8485 Intermediate Similarity NPC249070
0.848 Intermediate Similarity NPC267549
0.848 Intermediate Similarity NPC207467
0.8476 Intermediate Similarity NPC476373
0.8476 Intermediate Similarity NPC301089
0.8476 Intermediate Similarity NPC268718
0.8476 Intermediate Similarity NPC150943
0.8476 Intermediate Similarity NPC119910
0.8476 Intermediate Similarity NPC36217
0.8476 Intermediate Similarity NPC91634
0.8466 Intermediate Similarity NPC264302
0.8466 Intermediate Similarity NPC125495
0.8462 Intermediate Similarity NPC67134
0.8462 Intermediate Similarity NPC473108
0.8462 Intermediate Similarity NPC171932
0.8462 Intermediate Similarity NPC47140
0.8462 Intermediate Similarity NPC28440
0.8457 Intermediate Similarity NPC142291
0.8457 Intermediate Similarity NPC321779
0.8457 Intermediate Similarity NPC67396
0.8457 Intermediate Similarity NPC173872
0.8457 Intermediate Similarity NPC7839
0.8457 Intermediate Similarity NPC119094
0.8452 Intermediate Similarity NPC476279
0.8448 Intermediate Similarity NPC112380
0.8447 Intermediate Similarity NPC224161
0.8447 Intermediate Similarity NPC476154
0.8443 Intermediate Similarity NPC43065
0.8443 Intermediate Similarity NPC49983
0.8443 Intermediate Similarity NPC317671
0.8443 Intermediate Similarity NPC142707
0.8443 Intermediate Similarity NPC472452
0.8443 Intermediate Similarity NPC26536

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC139540 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8788 High Similarity NPD5844 Phase 1
0.875 High Similarity NPD4868 Clinical (unspecified phase)
0.8503 High Similarity NPD7228 Approved
0.8462 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8424 Intermediate Similarity NPD7199 Phase 2
0.8415 Intermediate Similarity NPD6234 Discontinued
0.8395 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.8383 Intermediate Similarity NPD6166 Phase 2
0.8383 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8383 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD37 Approved
0.8313 Intermediate Similarity NPD6959 Discontinued
0.8293 Intermediate Similarity NPD4965 Approved
0.8293 Intermediate Similarity NPD4966 Approved
0.8293 Intermediate Similarity NPD4967 Phase 2
0.8282 Intermediate Similarity NPD1465 Phase 2
0.8263 Intermediate Similarity NPD6232 Discontinued
0.8239 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.8225 Intermediate Similarity NPD7473 Discontinued
0.8214 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.811 Intermediate Similarity NPD1934 Approved
0.8105 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.8105 Intermediate Similarity NPD1613 Approved
0.8081 Intermediate Similarity NPD7074 Phase 3
0.8061 Intermediate Similarity NPD8455 Phase 2
0.8061 Intermediate Similarity NPD7819 Suspended
0.8023 Intermediate Similarity NPD7054 Approved
0.8012 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7989 Intermediate Similarity NPD7240 Approved
0.7988 Intermediate Similarity NPD4380 Phase 2
0.7977 Intermediate Similarity NPD7472 Approved
0.7974 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7953 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7943 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7941 Intermediate Similarity NPD7229 Phase 3
0.7941 Intermediate Similarity NPD3787 Discontinued
0.7939 Intermediate Similarity NPD7411 Suspended
0.7931 Intermediate Similarity NPD6797 Phase 2
0.7927 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7917 Intermediate Similarity NPD7075 Discontinued
0.7898 Intermediate Similarity NPD8312 Approved
0.7898 Intermediate Similarity NPD8313 Approved
0.7886 Intermediate Similarity NPD7251 Discontinued
0.7877 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7861 Intermediate Similarity NPD3818 Discontinued
0.7857 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7843 Intermediate Similarity NPD4908 Phase 1
0.7843 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.784 Intermediate Similarity NPD1511 Approved
0.7811 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.7809 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7798 Intermediate Similarity NPD3817 Phase 2
0.7778 Intermediate Similarity NPD8127 Discontinued
0.7778 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7764 Intermediate Similarity NPD3750 Approved
0.7758 Intermediate Similarity NPD1653 Approved
0.7751 Intermediate Similarity NPD7768 Phase 2
0.7744 Intermediate Similarity NPD1512 Approved
0.774 Intermediate Similarity NPD7808 Phase 3
0.7738 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7738 Intermediate Similarity NPD2801 Approved
0.7736 Intermediate Similarity NPD6099 Approved
0.7736 Intermediate Similarity NPD6100 Approved
0.7719 Intermediate Similarity NPD5494 Approved
0.7716 Intermediate Similarity NPD6190 Approved
0.7714 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7706 Intermediate Similarity NPD3749 Approved
0.7692 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7684 Intermediate Similarity NPD6559 Discontinued
0.7679 Intermediate Similarity NPD6801 Discontinued
0.7677 Intermediate Similarity NPD3027 Phase 3
0.766 Intermediate Similarity NPD7680 Approved
0.7657 Intermediate Similarity NPD3751 Discontinued
0.7654 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7643 Intermediate Similarity NPD4060 Phase 1
0.7634 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD5124 Phase 1
0.7593 Intermediate Similarity NPD6674 Discontinued
0.7593 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD2533 Approved
0.7576 Intermediate Similarity NPD2534 Approved
0.7576 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD2532 Approved
0.7576 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD4625 Phase 3
0.7546 Intermediate Similarity NPD8166 Discontinued
0.7546 Intermediate Similarity NPD4628 Phase 3
0.7544 Intermediate Similarity NPD3882 Suspended
0.7531 Intermediate Similarity NPD1549 Phase 2
0.7531 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.753 Intermediate Similarity NPD6273 Approved
0.7516 Intermediate Similarity NPD6798 Discontinued
0.75 Intermediate Similarity NPD3226 Approved
0.75 Intermediate Similarity NPD1610 Phase 2
0.7485 Intermediate Similarity NPD5402 Approved
0.7485 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7461 Intermediate Similarity NPD8151 Discontinued
0.7453 Intermediate Similarity NPD3748 Approved
0.7439 Intermediate Similarity NPD7003 Approved
0.741 Intermediate Similarity NPD7390 Discontinued
0.741 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD7097 Phase 1
0.7385 Intermediate Similarity NPD7783 Phase 2
0.7385 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD5403 Approved
0.7381 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7377 Intermediate Similarity NPD8150 Discontinued
0.7375 Intermediate Similarity NPD6355 Discontinued
0.7375 Intermediate Similarity NPD230 Phase 1
0.7365 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7363 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD6233 Phase 2
0.7353 Intermediate Similarity NPD6599 Discontinued
0.7348 Intermediate Similarity NPD7549 Discontinued
0.7346 Intermediate Similarity NPD7033 Discontinued
0.7338 Intermediate Similarity NPD1608 Approved
0.7325 Intermediate Similarity NPD2861 Phase 2
0.7312 Intermediate Similarity NPD4140 Approved
0.7308 Intermediate Similarity NPD2797 Approved
0.7305 Intermediate Similarity NPD6799 Approved
0.7301 Intermediate Similarity NPD2438 Suspended
0.7296 Intermediate Similarity NPD3268 Approved
0.7296 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7294 Intermediate Similarity NPD7458 Discontinued
0.7293 Intermediate Similarity NPD7685 Pre-registration
0.7292 Intermediate Similarity NPD7435 Discontinued
0.7278 Intermediate Similarity NPD7427 Discontinued
0.7263 Intermediate Similarity NPD7177 Discontinued
0.7262 Intermediate Similarity NPD5401 Approved
0.7256 Intermediate Similarity NPD6005 Phase 3
0.7256 Intermediate Similarity NPD6004 Phase 3
0.7256 Intermediate Similarity NPD5763 Approved
0.7256 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7256 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7256 Intermediate Similarity NPD7266 Discontinued
0.7256 Intermediate Similarity NPD5762 Approved
0.7256 Intermediate Similarity NPD6002 Phase 3
0.7244 Intermediate Similarity NPD1283 Approved
0.7239 Intermediate Similarity NPD1510 Phase 2
0.7229 Intermediate Similarity NPD4110 Phase 3
0.7229 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7225 Intermediate Similarity NPD6779 Approved
0.7225 Intermediate Similarity NPD6777 Approved
0.7225 Intermediate Similarity NPD6776 Approved
0.7225 Intermediate Similarity NPD6781 Approved
0.7225 Intermediate Similarity NPD6778 Approved
0.7225 Intermediate Similarity NPD6782 Approved
0.7225 Intermediate Similarity NPD6780 Approved
0.7205 Intermediate Similarity NPD2979 Phase 3
0.7195 Intermediate Similarity NPD1551 Phase 2
0.7195 Intermediate Similarity NPD5408 Approved
0.7195 Intermediate Similarity NPD5404 Approved
0.7195 Intermediate Similarity NPD5406 Approved
0.7195 Intermediate Similarity NPD2935 Discontinued
0.7195 Intermediate Similarity NPD2796 Approved
0.7195 Intermediate Similarity NPD5405 Approved
0.7188 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD4749 Approved
0.7169 Intermediate Similarity NPD1652 Phase 2
0.716 Intermediate Similarity NPD7446 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7159 Intermediate Similarity NPD919 Approved
0.7152 Intermediate Similarity NPD2346 Discontinued
0.7143 Intermediate Similarity NPD17 Approved
0.7143 Intermediate Similarity NPD8032 Phase 2
0.7135 Intermediate Similarity NPD5711 Approved
0.7135 Intermediate Similarity NPD5710 Approved
0.7134 Intermediate Similarity NPD3225 Approved
0.7124 Intermediate Similarity NPD1548 Phase 1
0.7119 Intermediate Similarity NPD6746 Phase 2
0.7113 Intermediate Similarity NPD4004 Approved
0.7113 Intermediate Similarity NPD4002 Approved
0.7105 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD3620 Phase 2
0.7098 Intermediate Similarity NPD2494 Approved
0.7098 Intermediate Similarity NPD2493 Approved
0.7098 Intermediate Similarity NPD3450 Approved
0.7098 Intermediate Similarity NPD3452 Approved
0.7097 Intermediate Similarity NPD8434 Phase 2
0.7091 Intermediate Similarity NPD4476 Approved
0.7091 Intermediate Similarity NPD4477 Approved
0.7077 Intermediate Similarity NPD4583 Approved
0.7077 Intermediate Similarity NPD7870 Phase 2
0.7077 Intermediate Similarity NPD7871 Phase 2
0.7077 Intermediate Similarity NPD4582 Approved
0.7074 Intermediate Similarity NPD2488 Approved
0.7074 Intermediate Similarity NPD2490 Approved
0.7071 Intermediate Similarity NPD7874 Approved
0.7071 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7068 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7051 Intermediate Similarity NPD422 Phase 1
0.7051 Intermediate Similarity NPD1281 Approved
0.7026 Intermediate Similarity NPD7698 Approved
0.7026 Intermediate Similarity NPD7697 Approved
0.7026 Intermediate Similarity NPD7696 Phase 3

Structure

External Identifiers

PubChem CID   44575964
ChEMBL   CHEMBL489954
ZINC  

Physicochemical Properties

Molecular Weight:  450.13
ALogP:  -2.9219
MLogP:  3.33
XLogP:  2.151
# Rotatable Bonds:  8
Polar Surface Area:  147.68
# H-Bond Aceptor:  2
# H-Bond Donor:  6
# Rings:  5
# Heavy Atoms:  33

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs