Natural Product: NPC53889

Natural Product ID:  NPC53889
Common Name:   (-)-Epicatechin 3-O-(3'-O-Methyl)Gallate
IUPAC Name:   [(2R,3R)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl] 3,4-dihydroxy-5-methoxybenzoate
Synonyms:  
Molecular Formula:   C23H20O10
Standard InCHIKey:  XGTBMCGGGJLOPS-IFMALSPDSA-N
Standard InCHI:  InChI=1S/C23H20O10/c1-31-19-6-11(5-17(28)21(19)29)23(30)33-20-9-13-15(26)7-12(24)8-18(13)32-22(20)10-2-3-14(25)16(27)4-10/h2-8,20,22,24-29H,9H2,1H3/t20-,22-/m1/s1
Canonical SMILES:  COc1cc(cc(c1O)O)C(=O)O[C@@H]1Cc2c(O)cc(cc2O[C@@H]1c1ccc(c(c1)O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaves PMID[22377672]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1 Others Radical scavenging activity IC50 = 10800 nM 10.6019/CHEMBL1201861
NPT4016 Individual Protein Matrix metalloproteinase 7 Homo sapiens IC50 > 100000 nM 27177826
NPT568 Individual Protein Matrix metalloproteinase-2 Homo sapiens IC50 = 88000 nM 27177826
NPT4015 Individual Protein Matrix metalloproteinase 14 Homo sapiens IC50 = 15600 nM 17850214
NPT2 Others Unspecified IC50 = 44100 nM 8904842
NPT759 Cell Line H9 Homo sapiens IC50 = 50 ug/ml 17261619

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC53889 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9934 High Similarity NPC87317
0.9868 High Similarity NPC38779
0.9868 High Similarity NPC68324
0.9868 High Similarity NPC160512
0.9868 High Similarity NPC114179
0.9868 High Similarity NPC289322
0.9868 High Similarity NPC156818
0.9801 High Similarity NPC291948
0.9801 High Similarity NPC88803
0.9801 High Similarity NPC104983
0.9801 High Similarity NPC250436
0.9801 High Similarity NPC300845
0.9739 High Similarity NPC24164
0.9671 High Similarity NPC318432
0.9615 High Similarity NPC142614
0.9603 High Similarity NPC474656
0.9494 High Similarity NPC473818
0.9487 High Similarity NPC476372
0.9487 High Similarity NPC476371
0.9408 High Similarity NPC75695
0.9375 High Similarity NPC476365
0.9367 High Similarity NPC471788
0.9363 High Similarity NPC285108
0.9363 High Similarity NPC33298
0.9359 High Similarity NPC24627
0.9359 High Similarity NPC476373
0.9299 High Similarity NPC158188
0.9276 High Similarity NPC473091
0.9264 High Similarity NPC67629
0.9264 High Similarity NPC79736
0.9259 High Similarity NPC172033
0.9259 High Similarity NPC175230
0.9259 High Similarity NPC88560
0.9255 High Similarity NPC149011
0.9255 High Similarity NPC180768
0.9255 High Similarity NPC204937
0.925 High Similarity NPC243877
0.925 High Similarity NPC14662
0.9241 High Similarity NPC476247
0.9236 High Similarity NPC203020
0.9236 High Similarity NPC239966
0.9236 High Similarity NPC289346
0.9226 High Similarity NPC222185
0.9211 High Similarity NPC107636
0.9211 High Similarity NPC98809
0.9211 High Similarity NPC476394
0.9207 High Similarity NPC267549
0.9198 High Similarity NPC271848
0.9198 High Similarity NPC81332
0.9198 High Similarity NPC262580
0.9198 High Similarity NPC476370
0.9198 High Similarity NPC289396
0.9198 High Similarity NPC212038
0.9187 High Similarity NPC207575
0.9187 High Similarity NPC13481
0.9182 High Similarity NPC121290
0.9177 High Similarity NPC142252
0.9177 High Similarity NPC305987
0.9177 High Similarity NPC165970
0.9177 High Similarity NPC113163
0.9177 High Similarity NPC288131
0.9177 High Similarity NPC84324
0.9177 High Similarity NPC112418
0.9177 High Similarity NPC66618
0.9172 High Similarity NPC289811
0.9172 High Similarity NPC172202
0.9172 High Similarity NPC267627
0.9172 High Similarity NPC37502
0.9172 High Similarity NPC160780
0.9172 High Similarity NPC476410
0.9172 High Similarity NPC40702
0.9172 High Similarity NPC284127
0.9167 High Similarity NPC165483
0.9161 High Similarity NPC469888
0.9161 High Similarity NPC18727
0.9145 High Similarity NPC472969
0.9141 High Similarity NPC476374
0.9141 High Similarity NPC472993
0.9141 High Similarity NPC98583
0.9139 High Similarity NPC40222
0.9139 High Similarity NPC268515
0.913 High Similarity NPC116745
0.9125 High Similarity NPC7688
0.9125 High Similarity NPC7154
0.9125 High Similarity NPC36
0.9125 High Similarity NPC72787
0.9125 High Similarity NPC125039
0.9125 High Similarity NPC36916
0.9125 High Similarity NPC58223
0.9125 High Similarity NPC477840
0.9119 High Similarity NPC90905
0.9119 High Similarity NPC4013
0.9119 High Similarity NPC471745
0.9119 High Similarity NPC219927
0.9119 High Similarity NPC477841
0.9114 High Similarity NPC471744
0.9114 High Similarity NPC101731
0.9108 High Similarity NPC156057
0.9108 High Similarity NPC247713
0.9108 High Similarity NPC291508
0.9108 High Similarity NPC299520
0.9108 High Similarity NPC1913
0.9108 High Similarity NPC133984
0.9108 High Similarity NPC474208
0.9108 High Similarity NPC472860
0.9108 High Similarity NPC210084
0.9108 High Similarity NPC129684
0.9108 High Similarity NPC222689
0.9108 High Similarity NPC474836
0.9108 High Similarity NPC63454
0.9108 High Similarity NPC99597
0.9108 High Similarity NPC48208
0.9108 High Similarity NPC35598
0.9108 High Similarity NPC162869
0.9108 High Similarity NPC108456
0.9108 High Similarity NPC183851
0.9108 High Similarity NPC475267
0.9103 High Similarity NPC145425
0.9097 High Similarity NPC236637
0.9097 High Similarity NPC257648
0.9097 High Similarity NPC219582
0.9097 High Similarity NPC302950
0.9097 High Similarity NPC477231
0.9091 High Similarity NPC476621
0.9091 High Similarity NPC476623
0.9091 High Similarity NPC476619
0.9091 High Similarity NPC476618
0.9091 High Similarity NPC476622
0.9091 High Similarity NPC476620
0.9091 High Similarity NPC472387
0.9091 High Similarity NPC243891
0.908 High Similarity NPC100251
0.908 High Similarity NPC67134
0.908 High Similarity NPC47140
0.908 High Similarity NPC65333
0.9074 High Similarity NPC197708
0.9074 High Similarity NPC658
0.9074 High Similarity NPC280493
0.9074 High Similarity NPC476279
0.9074 High Similarity NPC229687
0.9068 High Similarity NPC43065
0.9062 High Similarity NPC67959
0.9062 High Similarity NPC45943
0.9057 High Similarity NPC134783
0.9057 High Similarity NPC26326
0.9057 High Similarity NPC472859
0.9057 High Similarity NPC469889
0.9057 High Similarity NPC25389
0.9057 High Similarity NPC311803
0.9057 High Similarity NPC109061
0.9045 High Similarity NPC35038
0.9045 High Similarity NPC235165
0.9045 High Similarity NPC255106
0.9045 High Similarity NPC278778
0.9045 High Similarity NPC472916
0.9045 High Similarity NPC291878
0.9045 High Similarity NPC227062
0.9045 High Similarity NPC195796
0.9038 High Similarity NPC197188
0.9038 High Similarity NPC291510
0.9038 High Similarity NPC43872
0.9038 High Similarity NPC144801
0.9038 High Similarity NPC116850
0.9038 High Similarity NPC238672
0.9032 High Similarity NPC476434
0.9032 High Similarity NPC267091
0.9032 High Similarity NPC31363
0.903 High Similarity NPC472992
0.903 High Similarity NPC297574
0.903 High Similarity NPC472991
0.902 High Similarity NPC142528
0.9013 High Similarity NPC262282
0.9012 High Similarity NPC260266
0.9012 High Similarity NPC45400
0.9012 High Similarity NPC295082
0.9012 High Similarity NPC229729
0.9006 High Similarity NPC165720
0.9 High Similarity NPC474034
0.9 High Similarity NPC42797
0.9 High Similarity NPC148273
0.9 High Similarity NPC474033
0.9 High Similarity NPC473445
0.8994 High Similarity NPC166277
0.8994 High Similarity NPC292415
0.8994 High Similarity NPC119125
0.8994 High Similarity NPC192686
0.8994 High Similarity NPC118256
0.8994 High Similarity NPC119209
0.8987 High Similarity NPC222814
0.8987 High Similarity NPC471479
0.8987 High Similarity NPC472598
0.8987 High Similarity NPC472914
0.8987 High Similarity NPC245758
0.8987 High Similarity NPC96167
0.8987 High Similarity NPC67876
0.8987 High Similarity NPC474055
0.8987 High Similarity NPC471515
0.8987 High Similarity NPC472910
0.8987 High Similarity NPC52530
0.8987 High Similarity NPC27337

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC53889 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9801 High Similarity NPD4868 Clinical (unspecified phase)
0.9125 High Similarity NPD6166 Phase 2
0.9125 High Similarity NPD6167 Clinical (unspecified phase)
0.9125 High Similarity NPD6168 Clinical (unspecified phase)
0.9097 High Similarity NPD1934 Approved
0.908 High Similarity NPD7993 Clinical (unspecified phase)
0.8957 High Similarity NPD5844 Phase 1
0.8917 High Similarity NPD2393 Clinical (unspecified phase)
0.8917 High Similarity NPD1465 Phase 2
0.8797 High Similarity NPD2801 Approved
0.8788 High Similarity NPD7074 Phase 3
0.878 High Similarity NPD3818 Discontinued
0.8743 High Similarity NPD4338 Clinical (unspecified phase)
0.8742 High Similarity NPD3817 Phase 2
0.8727 High Similarity NPD7054 Approved
0.8688 High Similarity NPD3882 Suspended
0.8675 High Similarity NPD7472 Approved
0.865 High Similarity NPD6232 Discontinued
0.8634 High Similarity NPD7075 Discontinued
0.8553 High Similarity NPD7411 Suspended
0.8519 High Similarity NPD4381 Clinical (unspecified phase)
0.8512 High Similarity NPD6797 Phase 2
0.8494 Intermediate Similarity NPD7473 Discontinued
0.8491 Intermediate Similarity NPD4380 Phase 2
0.8462 Intermediate Similarity NPD7251 Discontinued
0.8462 Intermediate Similarity NPD1511 Approved
0.8447 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8418 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8415 Intermediate Similarity NPD5494 Approved
0.8412 Intermediate Similarity NPD7808 Phase 3
0.8354 Intermediate Similarity NPD1512 Approved
0.8344 Intermediate Similarity NPD230 Phase 1
0.8333 Intermediate Similarity NPD7819 Suspended
0.8282 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.8282 Intermediate Similarity NPD5402 Approved
0.8272 Intermediate Similarity NPD6801 Discontinued
0.8258 Intermediate Similarity NPD1549 Phase 2
0.8253 Intermediate Similarity NPD7199 Phase 2
0.8242 Intermediate Similarity NPD6234 Discontinued
0.8228 Intermediate Similarity NPD6799 Approved
0.8217 Intermediate Similarity NPD6190 Approved
0.8214 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8205 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.8194 Intermediate Similarity NPD1550 Clinical (unspecified phase)
0.8194 Intermediate Similarity NPD1552 Clinical (unspecified phase)
0.8176 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8161 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.8158 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.8158 Intermediate Similarity NPD1613 Approved
0.8155 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.8153 Intermediate Similarity NPD3750 Approved
0.8153 Intermediate Similarity NPD4628 Phase 3
0.8144 Intermediate Similarity NPD6959 Discontinued
0.814 Intermediate Similarity NPD6559 Discontinued
0.8137 Intermediate Similarity NPD1653 Approved
0.8121 Intermediate Similarity NPD7768 Phase 2
0.8118 Intermediate Similarity NPD7228 Approved
0.8113 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.8075 Intermediate Similarity NPD5403 Approved
0.8072 Intermediate Similarity NPD3749 Approved
0.807 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.8063 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.8049 Intermediate Similarity NPD37 Approved
0.8037 Intermediate Similarity NPD6599 Discontinued
0.8035 Intermediate Similarity NPD7685 Pre-registration
0.8026 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8023 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.8013 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.8013 Intermediate Similarity NPD2796 Approved
0.8012 Intermediate Similarity NPD4967 Phase 2
0.8012 Intermediate Similarity NPD4966 Approved
0.8012 Intermediate Similarity NPD4965 Approved
0.7961 Intermediate Similarity NPD3027 Phase 3
0.795 Intermediate Similarity NPD5401 Approved
0.795 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD1510 Phase 2
0.7947 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7871 Intermediate Similarity NPD447 Suspended
0.7836 Intermediate Similarity NPD3926 Phase 2
0.7834 Intermediate Similarity NPD3748 Approved
0.7811 Intermediate Similarity NPD919 Approved
0.7806 Intermediate Similarity NPD943 Approved
0.7806 Intermediate Similarity NPD1240 Approved
0.7799 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7792 Intermediate Similarity NPD6798 Discontinued
0.7785 Intermediate Similarity NPD1551 Phase 2
0.7785 Intermediate Similarity NPD2935 Discontinued
0.7778 Intermediate Similarity NPD4908 Phase 1
0.7758 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD8313 Approved
0.774 Intermediate Similarity NPD8312 Approved
0.7738 Intermediate Similarity NPD5353 Approved
0.7736 Intermediate Similarity NPD7266 Discontinued
0.7735 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7733 Intermediate Similarity NPD5242 Approved
0.773 Intermediate Similarity NPD2534 Approved
0.773 Intermediate Similarity NPD2532 Approved
0.773 Intermediate Similarity NPD2533 Approved
0.7712 Intermediate Similarity NPD9494 Approved
0.7707 Intermediate Similarity NPD1607 Approved
0.7702 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7701 Intermediate Similarity NPD3751 Discontinued
0.7679 Intermediate Similarity NPD8455 Phase 2
0.7677 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7651 Intermediate Similarity NPD3226 Approved
0.7643 Intermediate Similarity NPD1933 Approved
0.7628 Intermediate Similarity NPD6233 Phase 2
0.7627 Intermediate Similarity NPD7240 Approved
0.7616 Intermediate Similarity NPD9269 Phase 2
0.7616 Intermediate Similarity NPD1247 Approved
0.7616 Intermediate Similarity NPD8127 Discontinued
0.7584 Intermediate Similarity NPD7549 Discontinued
0.7572 Intermediate Similarity NPD7229 Phase 3
0.7572 Intermediate Similarity NPD3787 Discontinued
0.7571 Intermediate Similarity NPD5953 Discontinued
0.7568 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.756 Intermediate Similarity NPD6385 Approved
0.756 Intermediate Similarity NPD6386 Approved
0.756 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.753 Intermediate Similarity NPD920 Approved
0.7528 Intermediate Similarity NPD7038 Approved
0.7528 Intermediate Similarity NPD7039 Approved
0.75 Intermediate Similarity NPD8151 Discontinued
0.7485 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7458 Intermediate Similarity NPD7286 Phase 2
0.7453 Intermediate Similarity NPD6099 Approved
0.7453 Intermediate Similarity NPD6100 Approved
0.7452 Intermediate Similarity NPD3764 Approved
0.7451 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7447 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.744 Intermediate Similarity NPD7458 Discontinued
0.7436 Intermediate Similarity NPD6832 Phase 2
0.7423 Intermediate Similarity NPD1652 Phase 2
0.7421 Intermediate Similarity NPD6355 Discontinued
0.7421 Intermediate Similarity NPD5124 Phase 1
0.7421 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7418 Intermediate Similarity NPD8150 Discontinued
0.7418 Intermediate Similarity NPD8434 Phase 2
0.741 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD2346 Discontinued
0.7391 Intermediate Similarity NPD2799 Discontinued
0.7391 Intermediate Similarity NPD7033 Discontinued
0.7391 Intermediate Similarity NPD4308 Phase 3
0.7386 Intermediate Similarity NPD1608 Approved
0.7365 Intermediate Similarity NPD6273 Approved
0.7355 Intermediate Similarity NPD2797 Approved
0.7355 Intermediate Similarity NPD1203 Approved
0.7351 Intermediate Similarity NPD9268 Approved
0.7342 Intermediate Similarity NPD3268 Approved
0.7342 Intermediate Similarity NPD2313 Discontinued
0.7341 Intermediate Similarity NPD6971 Discontinued
0.7333 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD7783 Phase 2
0.733 Intermediate Similarity NPD7435 Discontinued
0.733 Intermediate Similarity NPD7680 Approved
0.7329 Intermediate Similarity NPD7097 Phase 1
0.7326 Intermediate Similarity NPD4288 Approved
0.732 Intermediate Similarity NPD422 Phase 1
0.732 Intermediate Similarity NPD1610 Phase 2
0.7317 Intermediate Similarity NPD1243 Approved
0.7317 Intermediate Similarity NPD2800 Approved
0.7312 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.7303 Intermediate Similarity NPD7177 Discontinued
0.7302 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7301 Intermediate Similarity NPD2344 Approved
0.729 Intermediate Similarity NPD3225 Approved
0.7289 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7285 Intermediate Similarity NPD9545 Approved
0.7284 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD4110 Phase 3
0.7273 Intermediate Similarity NPD7003 Approved
0.7273 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5711 Approved
0.7273 Intermediate Similarity NPD5710 Approved
0.7273 Intermediate Similarity NPD8166 Discontinued
0.7268 Intermediate Similarity NPD7585 Approved
0.7263 Intermediate Similarity NPD6779 Approved
0.7263 Intermediate Similarity NPD6781 Approved
0.7263 Intermediate Similarity NPD6777 Approved
0.7263 Intermediate Similarity NPD6778 Approved
0.7263 Intermediate Similarity NPD6776 Approved
0.7263 Intermediate Similarity NPD6780 Approved
0.7263 Intermediate Similarity NPD6782 Approved
0.725 Intermediate Similarity NPD4060 Phase 1
0.7246 Intermediate Similarity NPD7390 Discontinued
0.7235 Intermediate Similarity NPD3455 Phase 2
0.7216 Intermediate Similarity NPD7583 Approved
0.7213 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7195 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD17 Approved
0.7186 Intermediate Similarity NPD7440 Discontinued
0.7178 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD1548 Phase 1
0.717 Intermediate Similarity NPD7095 Approved
0.7161 Intermediate Similarity NPD9717 Approved
0.7152 Intermediate Similarity NPD3018 Phase 2
0.7152 Intermediate Similarity NPD2861 Phase 2
0.7151 Intermediate Similarity NPD4287 Approved
0.7143 Intermediate Similarity NPD4307 Phase 2

Structure

External Identifiers

PubChem CID   467296
ChEMBL   CHEMBL158521
ZINC  

Physicochemical Properties

Molecular Weight:  456.11
ALogP:  -3.0972
MLogP:  2.89
XLogP:  1.318
# Rotatable Bonds:  12
Polar Surface Area:  166.14
# H-Bond Aceptor:  2
# H-Bond Donor:  6
# Rings:  4
# Heavy Atoms:  33

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs