Natural Product: NPC605386

Natural Product IDNPC605386
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
PIMZUZSSNYHVCU-YKWPQBAZSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL47244
PubChem CID n.a.
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey PIMZUZSSNYHVCU-YKWPQBAZSA-N
Standard InCHI InChI=1S/C15H16O6/c1-5(2)7-8-11(16)19-9(7)10-13(3)14(8,18)4-6-15(13,21-6)12(17)20-10/h6-10,18H,1,4H2,2-3H3/t6-,7+,8-,9-,10-,13-,14-,15+/m1/s1
SMILES C=C(C)[C@@H]1[C@H]2OC(=O)[C@@H]1[C@]1(O)C[C@H]3O[C@]34C(=O)O[C@H]2[C@]14C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   292.09 Volume:   270.046
?
Van der Waals volume.
Dense:   1.082 LogP:   1.43
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.709
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -2.729
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   21.0
TPSA:   85.36
?
Topological Polar Surface Area.
H-Bond Acceptor:   6.0
H-Bond Donor:   1.0 Rings:   5.0
Heavy Atoms:   6.0

MedChem Properties

QED Drug-Likeness Score:   0.414 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   6.435 Fsp3:   0.733
MCE-18:   118.154
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.188 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.017
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.016
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.351 Promiscuous compounds:   0.669

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.312 MDCK Permeability:   -4.778
Pgp-inhibitor:   0.014 Pgp-substrate:   0.019
PAMPA:   0.832
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.111
20% Bioavailability (F20%):   0.351 30% Bioavailability (F30%):   0.858
50% Bioavailability (F50%):   0.988

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.608 MRP1:   0.899
Plasma Protein Binding (PPB):   64.933% Volume Distribution (VD):   -0.019
Fu: 34.271%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.993
OATP1B3 inhibitor:   0.999 BCRP inhibitor:   0.18
BSEP inhibitor:   0.696

ADMET: Metabolism

CYP1A2-inhibitor:   0.007 CYP1A2-substrate:   0.004
CYP2C19-inhibitor:   0.299 CYP2C19-substrate:   0.001
CYP2C9-inhibitor:   0.051 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.021
CYP3A4-inhibitor:   0.048 CYP3A4-substrate:   0.004
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.543
HLM stability:   0.782
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  9.433 Half-life (T1/2):  2.221

ADMET: Toxicity

hERG Blockers:  0.022 hERG Blockers (10um):  0.261
Human Hepatotoxicity (H-HT):  0.324 Drug-induced Liver Injury (DILI):  0.435
AMES Toxicity:  0.735 Rat Oral Acute Toxicity:  0.491
Maximum Recommended Daily Dose:  0.179 Skin Sensitization:  0.981
Carcinogencity:  0.836 Eye Corrosion:  0.848
Eye Irritation:  0.985 Respiratory Toxicity:  0.299
Drug-induced Neurotoxicity:  0.479 Ototoxicity:  0.198
Hematotoxicity:  0.332 Drug-induced Nephrotoxicity:  0.609
Genotoxicity:  0.849 RPMI-8226 Immunitoxicity:  0.061
A549 Cytotoxicity:  0.102 Hek293 Cytotoxicity:  0.181
BCF:   1.041
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.615
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.207
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.716
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8676 Anamirta cocculus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22185 Cocculus indicus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22185 Cocculus indicus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22185 Cocculus indicus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8676 Anamirta cocculus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8676 Anamirta cocculus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22185 Cocculus indicus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT145 Individual protein Mu opioid receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT274 Individual protein Platelet activating factor receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT252 Individual protein Histamine H2 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT223 Individual protein Alpha-2b adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT212 Individual protein Cytochrome P450 2C9 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT242 Individual protein Dopamine D1 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT279 Individual protein Leukocyte elastase Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT280 Individual protein Matrix metalloproteinase 9 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT182 Individual protein Protein kinase C alpha Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT284 Individual protein Serine/threonine protein phosphatase 2B catalytic subunit, alpha isoform Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT287 Individual protein Leukocyte common antigen Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT290 Individual protein Serotonin 2a (5-HT2a) receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT292 Individual protein Serotonin 2c (5-HT2c) receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT251 Individual protein Histamine H1 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT271 Individual protein Delta opioid receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT216 Individual protein Adenosine A1 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT233 Individual protein Carbonic anhydrase II Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT245 Individual protein Dopamine D4 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30 Individual protein Cyclooxygenase-1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT240 Individual protein Cytochrome P450 2A6 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT240 Individual protein Cytochrome P450 2A6 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT243 Individual protein Dopamine D2 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT243 Individual protein Dopamine D2 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT236 Individual protein C-C chemokine receptor type 5 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT239 Individual protein Cholecystokinin A receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT241 Individual protein Cytochrome P450 2E1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT108 Individual protein Estrogen receptor alpha Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT108 Individual protein Estrogen receptor alpha Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT248 Individual protein Estrogen receptor beta Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT270 Individual protein Nitric oxide synthase, inducible Mus musculus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT296 Individual protein Sigma opioid receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT300 Individual protein Thromboxane-A synthase Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT218 Individual protein Adenosine A3 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT226 Individual protein Beta-2 adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT275 Individual protein Progesterone receptor Bos taurus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT282 Individual protein MAP kinase ERK2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT249 Individual protein Glucocorticoid receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT272 Individual protein Kappa opioid receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT208 Individual protein Cytochrome P450 1A2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT298 Individual protein Neurokinin 2 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT295 Individual protein Serotonin transporter Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT229 Individual protein Angiotensin II type 2 (AT-2) receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT297 Individual protein Neurokinin 1 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT294 Individual protein Serotonin 6 (5-HT6) receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT299 Individual protein Androgen Receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT303 Individual protein Vasopressin V1a receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT218 Individual protein Adenosine A3 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT236 Individual protein C-C chemokine receptor type 5 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT14 Individual protein Tyrosine-protein kinase FYN Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT288 Individual protein Serotonin 1a (5-HT1a) receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT182 Individual protein Protein kinase C alpha Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT216 Individual protein Adenosine A1 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT204 Individual protein Acetylcholinesterase Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT301 Individual protein Vascular endothelial growth factor receptor 1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT221 Individual protein Alpha-1d adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT247 Individual protein Endothelin receptor ET-A Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT219 Individual protein Alpha-1a adrenergic receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT222 Individual protein Alpha-2a adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT224 Individual protein Alpha-2c adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT244 Individual protein Dopamine D3 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT221 Individual protein Alpha-1d adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT294 Individual protein Serotonin 6 (5-HT6) receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT300 Individual protein Thromboxane-A synthase Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT234 Individual protein C-C chemokine receptor type 2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT228 Individual protein Norepinephrine transporter Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT109 Individual protein Cytochrome P450 3A4 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT283 Individual protein MAP kinase p38 alpha Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT14 Individual protein Tyrosine-protein kinase FYN Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT212 Individual protein Cytochrome P450 2C9 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT222 Individual protein Alpha-2a adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT289 Individual protein Serotonin 1b (5-HT1b) receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT291 Individual protein Serotonin 2b (5-HT2b) receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT297 Individual protein Neurokinin 1 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT295 Individual protein Serotonin transporter Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT249 Individual protein Glucocorticoid receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT255 Individual protein Leukotriene C4 synthase Cavia porcellus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT285 Individual protein Epidermal growth factor receptor erbB1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT290 Individual protein Serotonin 2a (5-HT2a) receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT281 Individual protein MAP kinase ERK1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT291 Individual protein Serotonin 2b (5-HT2b) receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT220 Individual protein Alpha-1b adrenergic receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT275 Individual protein Progesterone receptor Bos taurus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT277 Individual protein Caspase-1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT277 Individual protein Caspase-1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT280 Individual protein Matrix metalloproteinase 9 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT253 Individual protein HMG-CoA reductase Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT256 Individual protein Cysteinyl leukotriene receptor 1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT257 Individual protein Arachidonate 15-lipoxygenase Oryctolagus cuniculus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT261 Individual protein Monoamine oxidase A Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT265 Individual protein Muscarinic acetylcholine receptor M4 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT217 Individual protein Adenosine A2a receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT262 Individual protein Muscarinic acetylcholine receptor M1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT288 Individual protein Serotonin 1a (5-HT1a) receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT269 Individual protein Nitric-oxide synthase, brain Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT244 Individual protein Dopamine D3 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT278 Individual protein Cathepsin G Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT204 Individual protein Acetylcholinesterase Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT273 Individual protein Phosphodiesterase 5A Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT237 Individual protein Interleukin-8 receptor A Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT241 Individual protein Cytochrome P450 2E1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT227 Individual protein Beta-3 adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT219 Individual protein Alpha-1a adrenergic receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT274 Individual protein Platelet activating factor receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT270 Individual protein Nitric oxide synthase, inducible Mus musculus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT266 Individual protein Muscarinic acetylcholine receptor M5 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT271 Individual protein Delta opioid receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT279 Individual protein Leukocyte elastase Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT223 Individual protein Alpha-2b adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT226 Individual protein Beta-2 adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT229 Individual protein Angiotensin II type 2 (AT-2) receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT230 Individual protein Bradykinin B2 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT248 Individual protein Estrogen receptor beta Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT208 Individual protein Cytochrome P450 1A2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT247 Individual protein Endothelin receptor ET-A Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT286 Individual protein Receptor protein-tyrosine kinase erbB-2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT13 Individual protein Tyrosine-protein kinase LCK Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT225 Individual protein Beta-1 adrenergic receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT225 Individual protein Beta-1 adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT235 Individual protein C-C chemokine receptor type 4 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT264 Individual protein Muscarinic acetylcholine receptor M3 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT285 Individual protein Epidermal growth factor receptor erbB1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT251 Individual protein Histamine H1 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT255 Individual protein Leukotriene C4 synthase Cavia porcellus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT292 Individual protein Serotonin 2c (5-HT2c) receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT260 Individual protein Melanocortin receptor 5 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT262 Individual protein Muscarinic acetylcholine receptor M1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT263 Individual protein Muscarinic acetylcholine receptor M2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT283 Individual protein MAP kinase p38 alpha Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT228 Individual protein Norepinephrine transporter Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT31 Individual protein Cyclooxygenase-2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT110 Individual protein Cytochrome P450 2D6 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT239 Individual protein Cholecystokinin A receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT237 Individual protein Interleukin-8 receptor A Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT242 Individual protein Dopamine D1 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT293 Individual protein Serotonin 4 (5-HT4) receptor Cavia porcellus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT296 Individual protein Sigma opioid receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT298 Individual protein Neurokinin 2 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT301 Individual protein Vascular endothelial growth factor receptor 1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT213 Individual protein Cytochrome P450 2C19 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT245 Individual protein Dopamine D4 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT232 Individual protein Cannabinoid CB1 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT303 Individual protein Vasopressin V1a receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT233 Individual protein Carbonic anhydrase II Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT234 Individual protein C-C chemokine receptor type 2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30 Individual protein Cyclooxygenase-1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT31 Individual protein Cyclooxygenase-2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT224 Individual protein Alpha-2c adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT227 Individual protein Beta-3 adrenergic receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT252 Individual protein Histamine H2 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT260 Individual protein Melanocortin receptor 5 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT267 Individual protein Neuropeptide Y receptor type 1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT267 Individual protein Neuropeptide Y receptor type 1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT269 Individual protein Nitric-oxide synthase, brain Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT272 Individual protein Kappa opioid receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT278 Individual protein Cathepsin G Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT282 Individual protein MAP kinase ERK2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT13 Individual protein Tyrosine-protein kinase LCK Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT289 Individual protein Serotonin 1b (5-HT1b) receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT217 Individual protein Adenosine A2a receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT220 Individual protein Alpha-1b adrenergic receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT235 Individual protein C-C chemokine receptor type 4 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT246 Individual protein Dopamine transporter Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT246 Individual protein Dopamine transporter Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT230 Individual protein Bradykinin B2 receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT299 Individual protein Androgen Receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT293 Individual protein Serotonin 4 (5-HT4) receptor Cavia porcellus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT145 Individual protein Mu opioid receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT253 Individual protein HMG-CoA reductase Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT276 Individual protein Angiotensin-converting enzyme Oryctolagus cuniculus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT276 Individual protein Angiotensin-converting enzyme Oryctolagus cuniculus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT259 Individual protein Melanocortin receptor 4 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT263 Individual protein Muscarinic acetylcholine receptor M2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT264 Individual protein Muscarinic acetylcholine receptor M3 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT281 Individual protein MAP kinase ERK1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT259 Individual protein Melanocortin receptor 4 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT257 Individual protein Arachidonate 15-lipoxygenase Oryctolagus cuniculus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT261 Individual protein Monoamine oxidase A Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT265 Individual protein Muscarinic acetylcholine receptor M4 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT273 Individual protein Phosphodiesterase 5A Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT286 Individual protein Receptor protein-tyrosine kinase erbB-2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT287 Individual protein Leukocyte common antigen Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT266 Individual protein Muscarinic acetylcholine receptor M5 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT284 Individual protein Serine/threonine protein phosphatase 2B catalytic subunit, alpha isoform Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT256 Individual protein Cysteinyl leukotriene receptor 1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28926 Protein complex group GABA-A receptor; anion channel Rattus norvegicus Displacement = 90.0 % PMID[3001304]
NPT72 Individual protein Solute carrier organic anion transporter family member 1B3 Homo sapiens Inhibition = 101.93 % PMID[23571415]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Activity n.a. n.a. n.a. PMID[17405877]
NPT68 Individual protein Aldose reductase Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Inhibition = 50.0 % PMID[17405877]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Activity = 17.6 ms PMID[17405877]
NPT73 Individual protein Solute carrier organic anion transporter family member 1B1 Homo sapiens Inhibition = 102.71 % PMID[23571415]
NPT67 Individual protein Cholinesterase Equus caballus Inhibition = -3.55 % PMID[23062825]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Activity = 19.0 % PMID[17405877]
NPT98 Individual protein HERG Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT69 Individual protein Matrix metalloproteinase-1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT29498 Single protein Interleukin-8 receptor B Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT29498 Single protein Interleukin-8 receptor B Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT68 Individual protein Aldose reductase Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Inhibition = 47.4 % PMID[17405877]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Activity = 9.3 ms PMID[17405877]
NPT98 Individual protein HERG Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Inhibition = 78.9 % PMID[17405877]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus Activity = 81.0 % PMID[17405877]
NPT28794 Single protein Glycine receptor subunit alpha-2 Rattus norvegicus IC50 = 2400.0 nM PMID[17405877]
NPT69 Individual protein Matrix metalloproteinase-1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT20859 Single protein Neuropeptide Y receptor type 2 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT66 Individual protein Acetylcholinesterase Electrophorus electricus Inhibition = 11.44 % PMID[23062825]
NPT29454 Single protein Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 Homo sapiens Inhibition = 0.6572 % PMID[38318365]
NPT20859 Single protein Neuropeptide Y receptor type 2 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30151 Single protein Melanocortin receptor 3 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28398 Single protein Insulin receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30151 Single protein Melanocortin receptor 3 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28550 Single protein Vasoactive intestinal polypeptide receptor 1 Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28398 Single protein Insulin receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28550 Single protein Vasoactive intestinal polypeptide receptor 1 Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT29442 Protein complex group Glycine receptor Rattus norvegicus IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT29442 Protein complex group Glycine receptor Rattus norvegicus Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30010 Single protein Calcitonin receptor Homo sapiens Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT30010 Single protein Calcitonin receptor Homo sapiens IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT28438 Unchecked Unchecked n.a. Ki n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28438 Unchecked Unchecked n.a. IC50 n.a. n.a. n.a. DrugMatrix in vitro pharmacology data
NPT28438 Unchecked Unchecked n.a. IC50 = 120.0 nM PMID[23466604]
NPT28438 Unchecked Unchecked n.a. IC50 = 378.0 nM PMID[18588282]
NPT28438 Unchecked Unchecked n.a. IC50 = 385.0 nM PMID[20875743]
NPT28438 Unchecked Unchecked n.a. IC50 = 250.0 nM PMID[23582449]
NPT28438 Unchecked Unchecked n.a. IC50 = 368.0 nM DrugMatrix in vitro pharmacology data
NPT28438 Unchecked Unchecked n.a. IC50 = 230.0 nM PMID[18983139]
NPT28438 Unchecked Unchecked n.a. IC50 = 77.0 nM PMID[26988801]
NPT28438 Unchecked Unchecked n.a. Ki = 96.0 nM PMID[23466604]
NPT28438 Unchecked Unchecked n.a. IC50 = 77.0 nM PMID[27876250]
NPT28438 Unchecked Unchecked n.a. Ki = 190.0 nM PMID[18983139]
NPT28438 Unchecked Unchecked n.a. Ki = 330.0 nM DrugMatrix in vitro pharmacology data
NPT2528 Organism Rhopalosiphum padi Rhopalosiphum padi EC50 > 100.0 nmol/cm2 PMID[12428955]
NPT1275 Organism Leptinotarsa decemlineata Leptinotarsa decemlineata EC50 = 27.5 nmol/cm2 PMID[12428955]
NPT348 Organism Myzus persicae Myzus persicae EC50 > 100.0 nmol/cm2 PMID[12428955]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC605386 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.766 Intermediate Similarity NPC608648

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC605386 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.766 Intermediate Similarity NPD1700 Approved

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data