NPASS Compound

Natural Product: NPC478828

Natural Product ID	NPC478828
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	SXQQNXWKESLODP-USJMQDDGSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	n.a.
Chemical Classification	CHEMONTID:0000000 [Organic compounds]

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 88 95 0 0 0 0 0 0 0 0999 V2000 -7.5396 -1.7771 1.6716 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.0695 -1.1205 0.3938 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.2792 -2.0652 -0.4313 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.5283 0.2377 0.6655 C 0 0 2 0 0 0 0 0 0 0 0 0 -7.9804 0.7451 0.6168 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2396 -0.4509 -0.3043 C 0 0 1 0 0 0 0 0 0 0 0 0 -7.8596 -0.0617 -1.6976 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.6409 0.7941 -1.7626 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8413 0.8849 -0.5080 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.4291 0.4432 -0.6607 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.9325 -0.3661 0.1306 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.7184 0.9820 -1.7212 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.3729 0.6523 -1.9822 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4983 1.0311 -0.8314 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.5128 2.5215 -0.5971 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.1283 2.9939 -0.2028 C 0 0 1 0 0 0 0 0 0 0 0 0 0.5799 1.9843 0.6689 C 0 0 2 0 0 0 0 0 0 0 0 0 0.6095 0.5971 0.0197 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.1733 0.6910 -1.1295 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8998 0.2838 -0.3778 O 0 0 0 0 0 0 0 0 0 0 0 0 2.4514 -0.8160 0.2164 C 0 0 2 0 0 0 0 0 0 0 0 0 2.5709 -0.7725 1.7247 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9626 -1.3669 1.5529 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9738 -0.7798 0.1823 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5959 0.5346 -0.0319 C 0 0 0 0 0 0 0 0 0 0 0 0 6.0011 0.3792 -0.0341 O 0 0 0 0 0 0 0 0 0 0 0 0 6.8756 1.4421 -0.2155 C 0 0 0 0 0 0 0 0 0 0 0 0 6.3877 2.5740 -0.3821 O 0 0 0 0 0 0 0 0 0 0 0 0 8.3142 1.2127 -0.2068 C 0 0 0 0 0 0 0 0 0 0 0 0 9.1508 2.2942 -0.3916 C 0 0 0 0 0 0 0 0 0 0 0 0 10.5174 2.1198 -0.3897 C 0 0 0 0 0 0 0 0 0 0 0 0 11.0068 0.8508 -0.2002 C 0 0 0 0 0 0 0 0 0 0 0 0 10.1739 -0.2464 -0.0130 C 0 0 0 0 0 0 0 0 0 0 0 0 8.8072 -0.0615 -0.0166 C 0 0 0 0 0 0 0 0 0 0 0 0 4.3799 -1.9191 -0.6860 C 0 0 2 0 0 0 0 0 0 0 0 0 3.1943 -2.2812 -1.3234 O 0 0 0 0 0 0 0 0 0 0 0 0 2.1845 -2.1676 -0.3395 C 0 0 2 0 0 0 0 0 0 0 0 0 0.8615 -2.3788 -0.9742 C 0 0 0 0 0 0 0 0 0 0 0 0 2.5198 -3.2032 0.7125 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8905 -2.8492 1.2647 C 0 0 2 0 0 0 0 0 0 0 0 0 4.2782 -3.6339 2.3135 O 0 0 0 0 0 0 0 0 0 0 0 0 4.7870 -2.9526 0.1829 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.1118 1.9477 1.8841 O 0 0 0 0 0 0 0 0 0 0 0 0 0.6302 3.3596 -1.3117 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4220 2.7938 0.4132 O 0 0 0 0 0 0 0 0 0 0 0 0 -8.9761 0.5938 -2.2565 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.8671 -2.6203 1.9721 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.5851 -2.1106 1.5144 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.5532 -1.0600 2.5210 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.8587 -1.6393 -1.3576 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5537 -2.5825 0.2092 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9889 -2.8718 -0.7837 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1004 0.4390 1.6449 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.4641 0.6019 1.5893 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.0727 1.7196 0.1354 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.2127 -0.9186 -0.1816 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.7282 -0.9748 -2.3512 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9640 1.8118 -2.1336 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.9585 0.4253 -2.5752 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7670 1.9820 -0.2387 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.0652 1.2047 -2.9158 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.2754 -0.4219 -2.2565 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.7765 0.4634 0.0638 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.7900 3.0812 -1.5073 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.2734 3.9007 0.4195 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6065 2.3675 0.8441 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2266 -0.1045 0.7660 H 0 0 0 0 0 0 0 0 0 0 0 0 1.8607 -1.3824 2.2862 H 0 0 0 0 0 0 0 0 0 0 0 0 2.6641 0.2746 2.0596 H 0 0 0 0 0 0 0 0 0 0 0 0 4.7107 -1.0387 2.2647 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3028 0.9211 -1.0291 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2799 1.2235 0.7794 H 0 0 0 0 0 0 0 0 0 0 0 0 8.7672 3.2889 -0.5399 H 0 0 0 0 0 0 0 0 0 0 0 0 11.2310 2.9195 -0.5283 H 0 0 0 0 0 0 0 0 0 0 0 0 12.0860 0.6559 -0.1897 H 0 0 0 0 0 0 0 0 0 0 0 0 10.5494 -1.2368 0.1351 H 0 0 0 0 0 0 0 0 0 0 0 0 8.0951 -0.8567 0.1208 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1499 -1.6850 -1.4189 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8347 -3.4221 -1.3542 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8280 -1.7437 -1.9036 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0134 -2.2295 -0.3101 H 0 0 0 0 0 0 0 0 0 0 0 0 2.6475 -4.1912 0.1981 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7706 -3.2837 1.5020 H 0 0 0 0 0 0 0 0 0 0 0 0 4.7921 -4.4151 1.9992 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4361 2.1968 2.6449 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5807 3.2138 -1.0673 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2501 3.2135 0.0716 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.6783 1.2101 -2.9943 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 2 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 2 0 10 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 1 0 18 20 1 0 21 20 1 6 21 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 1 0 26 27 1 0 27 28 2 0 27 29 1 0 29 30 2 0 30 31 1 0 31 32 2 0 32 33 1 0 33 34 2 0 24 35 1 0 35 36 1 0 36 37 1 0 37 38 1 6 37 39 1 0 39 40 1 0 40 41 1 1 40 42 1 0 17 43 1 0 16 44 1 0 15 45 1 0 7 46 1 0 6 2 1 0 19 14 1 0 37 21 1 0 9 4 1 0 24 21 1 0 34 29 1 0 42 35 1 0 40 23 1 0 1 47 1 0 1 48 1 0 1 49 1 0 3 50 1 0 3 51 1 0 3 52 1 0 4 53 1 1 5 54 1 0 5 55 1 0 6 56 1 6 7 57 1 6 8 58 1 0 8 59 1 0 9 60 1 1 13 61 1 0 13 62 1 0 14 63 1 1 15 64 1 6 16 65 1 1 17 66 1 1 18 67 1 1 22 68 1 0 22 69 1 0 23 70 1 0 25 71 1 0 25 72 1 0 30 73 1 0 31 74 1 0 32 75 1 0 33 76 1 0 34 77 1 0 35 78 1 6 38 79 1 0 38 80 1 0 38 81 1 0 39 82 1 0 39 83 1 0 41 84 1 0 43 85 1 0 44 86 1 0 45 87 1 0 46 88 1 0 M END

Standard InCHIKey	SXQQNXWKESLODP-USJMQDDGSA-N
Standard InCHI	InChI=1S/C33H42O13/c1-29(2)17-10-18(29)19(34)9-16(17)26(39)41-12-20-22(35)23(36)24(37)27(43-20)44-33-11-21-31(33,14-42-25(38)15-7-5-4-6-8-15)28-45-30(33,3)13-32(21,40)46-28/h4-8,16-24,27-28,34-37,40H,9-14H2,1-3H3/t16-,17+,18-,19-,20+,21?,22+,23-,24+,27-,28+,30-,31?,32+,33-/m0/s1
SMILES	CC1(C)[C@@H]2C[C@H]1[C@H](C[C@@H]2C(=O)OC[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@@]12CC3C2(COC(=O)c2ccccc2)[C@@H]2O[C@@]1(C)C[C@@]3(O)O2)O)O)O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	646.26	Volume:	611.963 ? Van der Waals volume.
Dense:	1.056	LogP:	1.754 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	2.317 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.222 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	10.0	Rigid Bonds:	35.0
TPSA:	190.67 ? Topological Polar Surface Area.	H-Bond Acceptor:	13.0
H-Bond Donor:	5.0	Rings:	11.0
Heavy Atoms:	13.0

MedChem Properties

QED Drug-Likeness Score:	0.242	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	6.967	Fsp³:	0.758
MCE-18:	195.552 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.769	Fluc inhibitor:	0.029 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.013 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.009 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.056	Promiscuous compounds:	0.041

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.676	MDCK Permeability:	-5.154
Pgp-inhibitor:	0.005	Pgp-substrate:	0.246
PAMPA:	0.995 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.016
20% Bioavailability (F20%):	0.586	30% Bioavailability (F30%):	0.879
50% Bioavailability (F50%):	0.987

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.087	MRP1:	0.899
Plasma Protein Binding (PPB):	66.442%	Volume Distribution (VD):	-0.693
Fu:	34.047% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	0.999
OATP1B3 inhibitor:	0.998	BCRP inhibitor:	0.001
BSEP inhibitor:	0.721

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.0	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.0
CYP3A4-inhibitor:	0.083	CYP3A4-substrate:	0.004
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.953
HLM stability:	0.036 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

2.24

Half-life (T1/2):

2.642

ADMET: Toxicity

hERG Blockers:	0.067	hERG Blockers (10um):	0.337
Human Hepatotoxicity (H-HT):	0.312	Drug-induced Liver Injury (DILI):	0.433
AMES Toxicity:	0.69	Rat Oral Acute Toxicity:	0.165
Maximum Recommended Daily Dose:	0.498	Skin Sensitization:	0.91
Carcinogencity:	0.196	Eye Corrosion:	0.0
Eye Irritation:	0.037	Respiratory Toxicity:	0.124
Drug-induced Neurotoxicity:	0.054	Ototoxicity:	0.932
Hematotoxicity:	0.157	Drug-induced Nephrotoxicity:	0.789
Genotoxicity:	0.32	RPMI-8226 Immunitoxicity:	0.206
A549 Cytotoxicity:	0.438	Hek293 Cytotoxicity:	0.566
BCF:	0.521 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.429 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.289 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.427 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Henan province, China		DOI[10.1016/j.foodres.2020.109416]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Gansu province, China		DOI[10.1016/j.foodres.2020.109416]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Anhui province, China		DOI[10.1016/j.foodres.2020.109416]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Shanxi province, China		DOI[10.1016/j.foodres.2020.109416]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Shandong province, China		DOI[10.1016/j.foodres.2020.109416]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	DOI[10.2174/092986712800229032]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[19402674]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[19721258]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[19772486]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Roots	n.a.	n.a.	PMID[20806783]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[21782011]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[22190295]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	seed	n.a.	PMID[23497864]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[26838074]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[27313650]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	root	n.a.	PMID[27429639]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Roots	n.a.	n.a.	PMID[29741372]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	HeZe, ShanDong, China	early autumn (from August to the beginning of September	PMID[32545196]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Roots	n.a.	n.a.	PMID[32951423]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	Seeds	Xinjiang,China		PMID[33063333]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO9798	Paeonia lactiflora	Species	Paeoniaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
Inhibition	5
IC50	1

Activity Type	# Activity
Cell line	6

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT113	Cell line	RAW264.7	Mus musculus	Inhibition	=	40.75	%	PMID[29741372]
NPT113	Cell line	RAW264.7	Mus musculus	Inhibition	=	38.71	%	PMID[29741372]
NPT113	Cell line	RAW264.7	Mus musculus	Inhibition	=	27.49	%	PMID[29741372]
NPT113	Cell line	RAW264.7	Mus musculus	Inhibition	=	23.34	%	PMID[29741372]
NPT113	Cell line	RAW264.7	Mus musculus	Inhibition	=	8.58	%	PMID[29741372]
NPT113	Cell line	RAW264.7	Mus musculus	IC50	>	100000.0	nM	PMID[29741372]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC478828 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	15586
0.1-0.2	31114
0.2-0.3	3046
0.3-0.4	70
0.4-0.5	9
0.5-0.6	11
0.6-0.7	9
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.7882	Intermediate Similarity	NPC34066
0.7882	Intermediate Similarity	NPC190862
0.7473	Intermediate Similarity	NPC469396
0.7473	Intermediate Similarity	NPC469458
0.7473	Intermediate Similarity	NPC149002
0.7473	Intermediate Similarity	NPC469398
0.7347	Intermediate Similarity	NPC478826
0.7347	Intermediate Similarity	NPC478827
0.7128	Intermediate Similarity	NPC80360
0.7071	Intermediate Similarity	NPC478829
0.7045	Intermediate Similarity	NPC303429
0.7045	Intermediate Similarity	NPC56594
0.7033	Intermediate Similarity	NPC88176
0.69	Remote Similarity	NPC469421
0.6869	Remote Similarity	NPC188217
0.6531	Remote Similarity	NPC195114
0.6465	Remote Similarity	NPC148185
0.6381	Remote Similarity	NPC469397
0.6277	Remote Similarity	NPC293568
0.6277	Remote Similarity	NPC161626
0.6095	Remote Similarity	NPC477617
0.6042	Remote Similarity	NPC120012
0.5625	Remote Similarity	NPC469448
0.5612	Remote Similarity	NPC469422
0.5567	Remote Similarity	NPC469417
0.549	Remote Similarity	NPC469420
0.5392	Remote Similarity	NPC469419
0.5306	Remote Similarity	NPC469399
0.5238	Remote Similarity	NPC469438
0.5208	Remote Similarity	NPC478832
0.514	Remote Similarity	NPC260300
0.5094	Remote Similarity	NPC469418
0.505	Remote Similarity	NPC222102

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC478828 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	4682
0.1-0.2	4408
0.2-0.3	59
0.3-0.4	1
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data