Natural Product: NPC12323

Natural Product IDNPC12323
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
WRXVPTMENPZUIZ-QEZWUOJGSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 11592917
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0001111] Flavonoid glycosides
          • [CHEMONTID:0001583] Flavonoid O-glycosides
            • [CHEMONTID:0003531] Flavonoid-3-O-glycosides

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey WRXVPTMENPZUIZ-QEZWUOJGSA-N
Standard InCHI InChI=1S/C33H40O19/c1-10-19(37)23(41)26(44)31(47-10)46-9-17-21(39)25(43)30(52-32-27(45)24(42)20(38)11(2)48-32)33(50-17)51-29-22(40)18-15(36)7-14(35)8-16(18)49-28(29)12-3-5-13(34)6-4-12/h3-8,10-11,17,19-21,23-27,30-39,41-45H,9H2,1-2H3/t10-,11-,17+,19-,20-,21+,23+,24+,25-,26+,27+,30+,31+,32-,33-/m0/s1
SMILES C[C@H]1[C@@H]([C@H]([C@H]([C@H](OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)Oc2c(=O)c3c(cc(cc3oc2c2ccc(cc2)O)O)O)O[C@H]2[C@@H]([C@@H]([C@H]([C@H](C)O2)O)O)O)O)O)O1)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   740.22 Volume:   673.908
?
Van der Waals volume.
Dense:   1.098 LogP:   1.002
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.467
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -2.416
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   8.0 Rigid Bonds:   36.0
TPSA:   308.12
?
Topological Polar Surface Area.
H-Bond Acceptor:   19.0
H-Bond Donor:   11.0 Rings:   6.0
Heavy Atoms:   19.0

MedChem Properties

QED Drug-Likeness Score:   0.113 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   5.308 Fsp3:   0.545
MCE-18:   150.706
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.618 Fluc inhibitor:   0.294
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.635
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.442
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.248 Promiscuous compounds:   0.549

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.655 MDCK Permeability:   -4.973
Pgp-inhibitor:   0.0 Pgp-substrate:   0.995
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.136
20% Bioavailability (F20%):   0.143 30% Bioavailability (F30%):   0.985
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.006
Plasma Protein Binding (PPB):   81.997% Volume Distribution (VD):   -0.079
Fu: 15.734%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.999
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.343
BSEP inhibitor:   0.007

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.004
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   1.0
HLM stability:   0.056
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  0.981 Half-life (T1/2):  4.962

ADMET: Toxicity

hERG Blockers:  0.01 hERG Blockers (10um):  0.201
Human Hepatotoxicity (H-HT):  0.313 Drug-induced Liver Injury (DILI):  0.877
AMES Toxicity:  0.738 Rat Oral Acute Toxicity:  0.01
Maximum Recommended Daily Dose:  0.03 Skin Sensitization:  0.99
Carcinogencity:  0.021 Eye Corrosion:  0.0
Eye Irritation:  0.432 Respiratory Toxicity:  0.003
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  0.951
Hematotoxicity:  0.03 Drug-induced Nephrotoxicity:  0.249
Genotoxicity:  0.744 RPMI-8226 Immunitoxicity:  0.167
A549 Cytotoxicity:  0.464 Hek293 Cytotoxicity:  0.704
BCF:   0.493
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.148
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.672
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   3.766
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO22583 Daedaleopsis confragosa Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[11014261]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota bud covers n.a. n.a. PMID[11975520]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. root n.a. PMID[12662107]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. PMID[16643051]
NPO12386 Russula japonica Species Russulaceae Eukaryota fruiting body n.a. n.a. PMID[16989517]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. PMID[17711348]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. PMID[19919067]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[19924037]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. The fungus is isolated from the leaves of L. rhodostegia, collected in June 2007 at Nanning, Guangxi Province, China 2007-JUN PMID[20550196]
NPO17211 Albizia inundata Species Fabaceae Eukaryota n.a. aerial part n.a. PMID[21314099]
NPO17211 Albizia inundata Species Fabaceae Eukaryota aerial parts Primavera, Department Patino, Province of Formosa, Argentina (lat. 27S, long. 58W) 1999-AUG PMID[21314099]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23501116]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. PMID[24328302]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[24471493]
NPO14608 Ralstonia solanacearum Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[25033087]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota Flowers n.a. n.a. PMID[28116906]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[34332066]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[34453396]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[34946632]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[37939623]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[3839140]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[38931371]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[7684040]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. PMID[9868153]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14075 Streptomyces viridogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO24329 Primula farinosa Species Primulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8416 Picrorhiza kurrooa Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24045 Lespedeza homoloba Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24216 Lolium perenne Species Poaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5380 Eucalyptus australiana Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10594 Centaurea solstitialis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6909 Zaluzania augusta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23957 Helleborus caucasicus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23916 Anthocleista grandiflora Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12726 Piptostigma fugax Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO17647 Schkuhria multiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12386 Russula japonica Species Russulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14608 Ralstonia solanacearum Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO17293 Menegazzia asahinae Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24284 Hypoestes serpens Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12607 Ircinia dendroides Species Irciniidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10892 Xanthorrhoea resinosa Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota Flower n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota Leaf Wax n.a. n.a. Database[FooDB]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. Database[FooDB]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. Database[FooDB]
NPO8416 Picrorhiza kurrooa Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24045 Lespedeza homoloba Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO16799 Glinus lotoides Species Molluginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8416 Picrorhiza kurrooa Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24045 Lespedeza homoloba Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24284 Hypoestes serpens Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30034 Onobrychis vicllfolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO8416 Picrorhiza kurrooa Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2046 Cathormion altissimum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2469 Erythrophleum couminga Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7608 Phelline lucida Species Phellinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7731 Lactuca serriola Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13192 Chara ceratophylla Species Characeae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16013 Inga velutina Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8416 Picrorhiza kurrooa Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12726 Piptostigma fugax Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12035 Rhododendron ungerni Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14274 Rhododendron mucronatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20585 Urochloa decumbens Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16306 Curcuma caesia Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13683 Cosmos diversifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17367 Parmelia subrudecta Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9342 Solenopsis punctaticeps Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO206 Ormosia nobilis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12386 Russula japonica Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11046 Ocimum pilosum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18557 Epicoccum nigrum Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5870 Xenia florida Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO24045 Lespedeza homoloba Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6909 Zaluzania augusta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10892 Xanthorrhoea resinosa Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10594 Centaurea solstitialis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14256 Acnistus breviflorus Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5380 Eucalyptus australiana Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20045 Burkholderia cepacia Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO7798 Elaeocarpus sylvestris Species Elaeocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12207 Lagochilus leiacanthus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14075 Streptomyces viridogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14379 Onobrychis viciifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10928 Xenia obscuronata Species Xeniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22583 Daedaleopsis confragosa Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3059 Erythrina pallida Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12607 Ircinia dendroides Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO534 Nassauvia cumingii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17834 Tipuana tipu Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14521 Oxalis purpurea Species Oxalidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24329 Primula farinosa Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17293 Menegazzia asahinae Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO875 Cryptocarya oblata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12557 Strychnos tricalysioides Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20617 Tilletia laevis Species Tilletiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4960 Garrya elliptica Species Garryaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1398 Trichodesma incanum Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24216 Lolium perenne Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23916 Anthocleista grandiflora Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16799 Glinus lotoides Species Molluginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12946 Onobrychis cyri Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23957 Helleborus caucasicus Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8171 Artocarpus altilis Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17647 Schkuhria multiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16234 Orgyia australis postica Species Lymantriidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15440 Chamaemelum nobile Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24173 Plutella xylostella Species Plutellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17211 Albizia inundata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14608 Ralstonia solanacearum Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO7247 Cymbopogon citratus Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24284 Hypoestes serpens Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC12323 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC12013
1.0 High Similarity NPC11432
1.0 High Similarity NPC477613
0.9405 High Similarity NPC602448
0.9286 High Similarity NPC221342
0.9286 High Similarity NPC476470
0.9157 High Similarity NPC122467
0.8539 High Similarity NPC89052
0.8519 High Similarity NPC476215
0.8295 Intermediate Similarity NPC89127
0.8202 Intermediate Similarity NPC292929
0.8182 Intermediate Similarity NPC142142
0.8118 Intermediate Similarity NPC173582
0.8118 Intermediate Similarity NPC265885
0.8118 Intermediate Similarity NPC181465
0.8118 Intermediate Similarity NPC215710
0.8118 Intermediate Similarity NPC163242
0.8118 Intermediate Similarity NPC272068
0.8118 Intermediate Similarity NPC473438
0.8118 Intermediate Similarity NPC253788
0.8065 Intermediate Similarity NPC303694
0.7835 Intermediate Similarity NPC480445
0.7766 Intermediate Similarity NPC173837
0.7765 Intermediate Similarity NPC95866
0.767 Intermediate Similarity NPC473554
0.75 Intermediate Similarity NPC25523
0.7442 Intermediate Similarity NPC170052
0.7442 Intermediate Similarity NPC135846
0.7416 Intermediate Similarity NPC203259
0.7416 Intermediate Similarity NPC33054
0.7416 Intermediate Similarity NPC155877
0.7416 Intermediate Similarity NPC176740
0.7416 Intermediate Similarity NPC471725
0.7416 Intermediate Similarity NPC134532
0.7416 Intermediate Similarity NPC602582
0.74 Intermediate Similarity NPC162394
0.7353 Intermediate Similarity NPC192539
0.7327 Intermediate Similarity NPC480444
0.7222 Intermediate Similarity NPC304741
0.72 Intermediate Similarity NPC488734
0.72 Intermediate Similarity NPC488735
0.72 Intermediate Similarity NPC488739
0.72 Intermediate Similarity NPC488732
0.72 Intermediate Similarity NPC488738
0.7188 Intermediate Similarity NPC203145
0.7111 Intermediate Similarity NPC470405
0.7075 Intermediate Similarity NPC487499
0.7 Intermediate Similarity NPC471079
0.6977 Remote Similarity NPC216496
0.6972 Remote Similarity NPC487502
0.6947 Remote Similarity NPC476472
0.6947 Remote Similarity NPC294815
0.6947 Remote Similarity NPC16194
0.6947 Remote Similarity NPC220173
0.6923 Remote Similarity NPC488737
0.6923 Remote Similarity NPC39834
0.6915 Remote Similarity NPC473327
0.6905 Remote Similarity NPC111929
0.6905 Remote Similarity NPC320283
0.6905 Remote Similarity NPC41121
0.6857 Remote Similarity NPC480443
0.68 Remote Similarity NPC480441
0.6778 Remote Similarity NPC254855
0.6778 Remote Similarity NPC94610
0.6768 Remote Similarity NPC189564
0.6731 Remote Similarity NPC488740
0.6731 Remote Similarity NPC488736
0.6731 Remote Similarity NPC488733
0.6702 Remote Similarity NPC240306
0.6667 Remote Similarity NPC65563
0.6667 Remote Similarity NPC470949
0.6604 Remote Similarity NPC209550
0.6596 Remote Similarity NPC255157
0.6596 Remote Similarity NPC470444
0.6596 Remote Similarity NPC259896
0.6596 Remote Similarity NPC473571
0.6596 Remote Similarity NPC110941
0.6596 Remote Similarity NPC186816
0.6579 Remote Similarity NPC487500
0.6545 Remote Similarity NPC231787
0.6522 Remote Similarity NPC487501
0.6489 Remote Similarity NPC156869
0.6444 Remote Similarity NPC224530
0.6392 Remote Similarity NPC32641
0.6392 Remote Similarity NPC256188
0.6383 Remote Similarity NPC67326
0.633 Remote Similarity NPC480442
0.6327 Remote Similarity NPC603079
0.6316 Remote Similarity NPC249560
0.63 Remote Similarity NPC218161
0.6273 Remote Similarity NPC25946
0.6263 Remote Similarity NPC76831
0.625 Remote Similarity NPC127546
0.625 Remote Similarity NPC57625
0.625 Remote Similarity NPC173637
0.625 Remote Similarity NPC317489
0.625 Remote Similarity NPC223424
0.625 Remote Similarity NPC600591
0.6224 Remote Similarity NPC35119
0.6214 Remote Similarity NPC292019
0.6214 Remote Similarity NPC202908
0.6146 Remote Similarity NPC605592
0.614 Remote Similarity NPC30011
0.614 Remote Similarity NPC72554
0.6111 Remote Similarity NPC474522
0.6106 Remote Similarity NPC275977
0.6105 Remote Similarity NPC187379
0.6105 Remote Similarity NPC139320
0.6087 Remote Similarity NPC259957
0.6067 Remote Similarity NPC77672
0.6067 Remote Similarity NPC133671
0.6067 Remote Similarity NPC135391
0.6067 Remote Similarity NPC78263
0.6067 Remote Similarity NPC250069
0.6064 Remote Similarity NPC116864
0.6064 Remote Similarity NPC244776
0.6058 Remote Similarity NPC219043
0.602 Remote Similarity NPC126784
0.602 Remote Similarity NPC241423
0.6 Remote Similarity NPC241781
0.5978 Remote Similarity NPC48093
0.5977 Remote Similarity NPC54802
0.5977 Remote Similarity NPC197304
0.5941 Remote Similarity NPC471669
0.5932 Remote Similarity NPC97817
0.5918 Remote Similarity NPC129264
0.5909 Remote Similarity NPC288084
0.5872 Remote Similarity NPC298666
0.5859 Remote Similarity NPC470125
0.5851 Remote Similarity NPC223747
0.5842 Remote Similarity NPC97119
0.5818 Remote Similarity NPC156785
0.5806 Remote Similarity NPC159579
0.5806 Remote Similarity NPC219904
0.5789 Remote Similarity NPC21359
0.5789 Remote Similarity NPC460984
0.5784 Remote Similarity NPC85751
0.5784 Remote Similarity NPC19240
0.5778 Remote Similarity NPC135599
0.5778 Remote Similarity NPC73855
0.5778 Remote Similarity NPC113968
0.5778 Remote Similarity NPC328940
0.5778 Remote Similarity NPC277174
0.5778 Remote Similarity NPC606877
0.5758 Remote Similarity NPC35167
0.5755 Remote Similarity NPC48984
0.5743 Remote Similarity NPC270448
0.5714 Remote Similarity NPC104677
0.57 Remote Similarity NPC61904
0.57 Remote Similarity NPC153755
0.567 Remote Similarity NPC473682
0.5652 Remote Similarity NPC265530
0.5644 Remote Similarity NPC470443
0.5638 Remote Similarity NPC129217
0.5631 Remote Similarity NPC470447
0.5619 Remote Similarity NPC214621
0.5619 Remote Similarity NPC34267
0.5591 Remote Similarity NPC46420
0.5566 Remote Similarity NPC11468
0.5556 Remote Similarity NPC471748
0.5545 Remote Similarity NPC296018
0.5543 Remote Similarity NPC249281
0.5484 Remote Similarity NPC145038
0.5484 Remote Similarity NPC56077
0.5484 Remote Similarity NPC281131
0.5484 Remote Similarity NPC64305
0.5484 Remote Similarity NPC253662
0.5484 Remote Similarity NPC179950
0.5484 Remote Similarity NPC88789
0.5484 Remote Similarity NPC491374
0.5481 Remote Similarity NPC473073
0.5481 Remote Similarity NPC473071
0.5474 Remote Similarity NPC175107
0.5472 Remote Similarity NPC14187
0.5464 Remote Similarity NPC276377
0.5455 Remote Similarity NPC258044
0.5455 Remote Similarity NPC217387
0.5455 Remote Similarity NPC29958
0.5455 Remote Similarity NPC609888
0.5437 Remote Similarity NPC482026
0.5429 Remote Similarity NPC287889
0.5429 Remote Similarity NPC470449
0.5417 Remote Similarity NPC85707
0.5413 Remote Similarity NPC473644
0.54 Remote Similarity NPC44931
0.5397 Remote Similarity NPC33083
0.5391 Remote Similarity NPC175429
0.5385 Remote Similarity NPC221288
0.5385 Remote Similarity NPC276222
0.5385 Remote Similarity NPC274618
0.5385 Remote Similarity NPC194836
0.5385 Remote Similarity NPC118284
0.5385 Remote Similarity NPC91493
0.5385 Remote Similarity NPC605081
0.5385 Remote Similarity NPC608147
0.5377 Remote Similarity NPC223426
0.5368 Remote Similarity NPC472459
0.5364 Remote Similarity NPC311850
0.5361 Remote Similarity NPC136761
0.5347 Remote Similarity NPC65003

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC12323 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7416 Intermediate Similarity NPD6797 Phase 2
0.5631 Remote Similarity NPD7251 Phase 2
0.5278 Remote Similarity NPD7808 Phase 3

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data