Natural Product: NPC476305

Natural Product ID:  NPC476305
Common Name:   Songarosaponin D
IUPAC Name:  
Synonyms:   Songarosaponin D
Molecular Formula:   C54H88O23
Standard InCHIKey:  SCCFOFCMLPZFLH-UJMGXVQGSA-N
Standard InCHI:  InChI=1S/C54H88O23/c1-23-32(60)41(75-46-40(68)42(35(63)26(20-57)72-46)76-47-43(37(65)34(62)25(19-56)73-47)77-44-38(66)36(64)33(61)24(18-55)71-44)39(67)45(70-23)74-31-10-11-49(4)27(50(31,5)21-58)8-12-51(6)28(49)9-13-54-29-16-48(2,3)14-15-53(29,22-69-54)30(59)17-52(51,54)7/h9,13,23-47,55-68H,8,10-12,14-22H2,1-7H3/t23-,24-,25-,26-,27-,28-,29-,30+,31+,32+,33-,34-,35-,36+,37+,38-,39-,40-,41+,42+,43-,44+,45+,46+,47+,49+,50+,51-,52+,53-,54+/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O[C@@H]([C@@H]2O)C)O[C@H]2CC[C@]3([C@H]([C@]2(C)CO)CC[C@@]2([C@@H]3C=C[C@]34[C@@]2(C)C[C@@H]([C@@]2([C@H]4CC(C)(C)CC2)CO3)O)C)C)[C@@H]([C@H]([C@@H]1O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33140 physospermum verticillatum Species Apiaceae Eukaryota PMID[19467877]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2282 Cell Line C32 Homo sapiens IC50 = 14000 nM 9358643
NPT369 Cell Line ACHN Homo sapiens IC50 = 37200 nM 7119809
NPT2287 Cell Line COR-L23 Homo sapiens IC50 = 400 nM 20028081
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 56100 nM 16933872
NPT492 Cell Line Caco-2 Homo sapiens IC50 = 16700 nM 22264895
NPT858 Cell Line LNCaP Homo sapiens IC50 > 50000 nM 23398362
NPT83 Cell Line MCF7 Homo sapiens IC50 > 50000 nM 23398362
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 10400 nM 23176597
NPT2 Others Unspecified IC50 > 50000 nM 22545792
NPT81 Cell Line A549 Homo sapiens IC50 = 41100 nM 22545792
NPT1083 Cell Line A-375 Homo sapiens IC50 = 12400 nM 9917313

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC476305 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9903 High Similarity NPC157474
0.9903 High Similarity NPC110494
0.9709 High Similarity NPC221110
0.9709 High Similarity NPC180459
0.9709 High Similarity NPC195116
0.9709 High Similarity NPC285253
0.9612 High Similarity NPC80210
0.9612 High Similarity NPC38376
0.9346 High Similarity NPC49413
0.9346 High Similarity NPC473128
0.9346 High Similarity NPC290608
0.9346 High Similarity NPC44298
0.9346 High Similarity NPC40133
0.9327 High Similarity NPC281939
0.9252 High Similarity NPC473125
0.9135 High Similarity NPC473127
0.9135 High Similarity NPC203354
0.9135 High Similarity NPC110656
0.9038 High Similarity NPC473124
0.9038 High Similarity NPC123796
0.9038 High Similarity NPC473123
0.8952 High Similarity NPC148603
0.8942 High Similarity NPC213674
0.8942 High Similarity NPC76497
0.8942 High Similarity NPC256133
0.8942 High Similarity NPC30289
0.8919 High Similarity NPC20979
0.8899 High Similarity NPC472716
0.8868 High Similarity NPC173859
0.8868 High Similarity NPC138057
0.8868 High Similarity NPC470512
0.8857 High Similarity NPC162354
0.8846 High Similarity NPC117714
0.8846 High Similarity NPC263756
0.8839 High Similarity NPC10366
0.8807 High Similarity NPC472715
0.8796 High Similarity NPC473328
0.8796 High Similarity NPC473318
0.8796 High Similarity NPC157530
0.8796 High Similarity NPC250089
0.8796 High Similarity NPC14630
0.8796 High Similarity NPC28844
0.8785 High Similarity NPC78034
0.8785 High Similarity NPC63368
0.8785 High Similarity NPC14946
0.8785 High Similarity NPC208650
0.8774 High Similarity NPC473734
0.8774 High Similarity NPC471434
0.8774 High Similarity NPC230948
0.8774 High Similarity NPC471435
0.875 High Similarity NPC100048
0.875 High Similarity NPC476690
0.8716 High Similarity NPC65155
0.8716 High Similarity NPC103627
0.8716 High Similarity NPC472717
0.8716 High Similarity NPC170974
0.8716 High Similarity NPC191439
0.8704 High Similarity NPC180183
0.8704 High Similarity NPC246124
0.8704 High Similarity NPC472897
0.8704 High Similarity NPC220427
0.8704 High Similarity NPC6931
0.8704 High Similarity NPC159005
0.8704 High Similarity NPC472896
0.8704 High Similarity NPC126147
0.8692 High Similarity NPC152584
0.8692 High Similarity NPC269627
0.8692 High Similarity NPC160816
0.8692 High Similarity NPC208477
0.8692 High Similarity NPC194842
0.8692 High Similarity NPC127801
0.8692 High Similarity NPC208594
0.8692 High Similarity NPC69737
0.8684 High Similarity NPC473130
0.8684 High Similarity NPC135369
0.8673 High Similarity NPC470515
0.8649 High Similarity NPC469348
0.8649 High Similarity NPC469347
0.8644 High Similarity NPC220838
0.8644 High Similarity NPC45606
0.8636 High Similarity NPC473021
0.8636 High Similarity NPC472987
0.8624 High Similarity NPC302057
0.8611 High Similarity NPC181467
0.8611 High Similarity NPC190395
0.8611 High Similarity NPC257964
0.8611 High Similarity NPC231340
0.8611 High Similarity NPC33053
0.8596 High Similarity NPC470911
0.8596 High Similarity NPC470914
0.8596 High Similarity NPC470517
0.8596 High Similarity NPC470915
0.8571 High Similarity NPC11548
0.8559 High Similarity NPC42171
0.8559 High Similarity NPC231797
0.8532 High Similarity NPC235824
0.8519 High Similarity NPC309448
0.8509 High Similarity NPC475899
0.8509 High Similarity NPC471548
0.8505 High Similarity NPC155010
0.8505 High Similarity NPC189852
0.8505 High Similarity NPC157659
0.8505 High Similarity NPC16520
0.8505 High Similarity NPC473020
0.8505 High Similarity NPC131479
0.8505 High Similarity NPC211879
0.8505 High Similarity NPC114874
0.8505 High Similarity NPC31907
0.8505 High Similarity NPC472252
0.8505 High Similarity NPC286969
0.8505 High Similarity NPC245280
0.8505 High Similarity NPC8039
0.8505 High Similarity NPC120123
0.85 High Similarity NPC222951
0.85 High Similarity NPC311178
0.85 High Similarity NPC300655
0.85 High Similarity NPC43589
0.8496 Intermediate Similarity NPC146652
0.8496 Intermediate Similarity NPC477030
0.8496 Intermediate Similarity NPC477029
0.8482 Intermediate Similarity NPC476671
0.8482 Intermediate Similarity NPC307642
0.8475 Intermediate Similarity NPC297950
0.8468 Intermediate Similarity NPC65034
0.8468 Intermediate Similarity NPC208189
0.8455 Intermediate Similarity NPC472901
0.8435 Intermediate Similarity NPC477464
0.843 Intermediate Similarity NPC319719
0.843 Intermediate Similarity NPC196874
0.843 Intermediate Similarity NPC475177
0.843 Intermediate Similarity NPC473679
0.843 Intermediate Similarity NPC322904
0.843 Intermediate Similarity NPC233223
0.843 Intermediate Similarity NPC475444
0.843 Intermediate Similarity NPC183816
0.843 Intermediate Similarity NPC324933
0.8426 Intermediate Similarity NPC470885
0.8426 Intermediate Similarity NPC221562
0.8426 Intermediate Similarity NPC187400
0.8426 Intermediate Similarity NPC173583
0.8426 Intermediate Similarity NPC54521
0.8426 Intermediate Similarity NPC57065
0.8426 Intermediate Similarity NPC476360
0.8426 Intermediate Similarity NPC109792
0.8426 Intermediate Similarity NPC476361
0.8426 Intermediate Similarity NPC165033
0.8426 Intermediate Similarity NPC273879
0.8426 Intermediate Similarity NPC93352
0.8421 Intermediate Similarity NPC473405
0.8411 Intermediate Similarity NPC312553
0.8411 Intermediate Similarity NPC159036
0.8411 Intermediate Similarity NPC288694
0.8407 Intermediate Similarity NPC477810
0.8396 Intermediate Similarity NPC473790
0.8396 Intermediate Similarity NPC64348
0.8393 Intermediate Similarity NPC216595
0.8393 Intermediate Similarity NPC475354
0.8393 Intermediate Similarity NPC112274
0.8393 Intermediate Similarity NPC473567
0.8381 Intermediate Similarity NPC240372
0.8376 Intermediate Similarity NPC474423
0.8376 Intermediate Similarity NPC74259
0.8364 Intermediate Similarity NPC125324
0.8364 Intermediate Similarity NPC51172
0.8364 Intermediate Similarity NPC49032
0.8362 Intermediate Similarity NPC37860
0.8362 Intermediate Similarity NPC144644
0.8362 Intermediate Similarity NPC142151
0.8362 Intermediate Similarity NPC153673
0.8362 Intermediate Similarity NPC267694
0.8362 Intermediate Similarity NPC110385
0.8349 Intermediate Similarity NPC472900
0.8349 Intermediate Similarity NPC472898
0.8349 Intermediate Similarity NPC472899
0.8333 Intermediate Similarity NPC213190
0.8333 Intermediate Similarity NPC473129
0.8333 Intermediate Similarity NPC16573
0.8333 Intermediate Similarity NPC99627
0.8333 Intermediate Similarity NPC112492
0.8333 Intermediate Similarity NPC472268
0.8333 Intermediate Similarity NPC472270
0.8333 Intermediate Similarity NPC472269
0.8333 Intermediate Similarity NPC23020
0.8319 Intermediate Similarity NPC192600
0.8319 Intermediate Similarity NPC475287
0.8319 Intermediate Similarity NPC475467
0.8319 Intermediate Similarity NPC251263
0.8319 Intermediate Similarity NPC473826
0.8319 Intermediate Similarity NPC114287
0.8319 Intermediate Similarity NPC323341
0.8319 Intermediate Similarity NPC46665
0.8319 Intermediate Similarity NPC174720
0.8319 Intermediate Similarity NPC219180
0.8319 Intermediate Similarity NPC151543
0.8319 Intermediate Similarity NPC155410
0.8319 Intermediate Similarity NPC309714
0.8319 Intermediate Similarity NPC133818
0.8319 Intermediate Similarity NPC241909
0.8319 Intermediate Similarity NPC295823
0.8319 Intermediate Similarity NPC476693

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC476305 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8205 Intermediate Similarity NPD8377 Approved
0.8205 Intermediate Similarity NPD8294 Approved
0.8136 Intermediate Similarity NPD8379 Approved
0.8136 Intermediate Similarity NPD8296 Approved
0.8136 Intermediate Similarity NPD8380 Approved
0.8136 Intermediate Similarity NPD8335 Approved
0.8136 Intermediate Similarity NPD8378 Approved
0.7983 Intermediate Similarity NPD8033 Approved
0.7881 Intermediate Similarity NPD7327 Approved
0.7881 Intermediate Similarity NPD7328 Approved
0.7845 Intermediate Similarity NPD8133 Approved
0.7815 Intermediate Similarity NPD7516 Approved
0.7686 Intermediate Similarity NPD7503 Approved
0.7541 Intermediate Similarity NPD8515 Approved
0.7541 Intermediate Similarity NPD8517 Approved
0.7541 Intermediate Similarity NPD8516 Approved
0.7419 Intermediate Similarity NPD8328 Phase 3
0.7398 Intermediate Similarity NPD8513 Phase 3
0.7339 Intermediate Similarity NPD8171 Discontinued
0.7302 Intermediate Similarity NPD7507 Approved
0.7265 Intermediate Similarity NPD6686 Approved
0.7213 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7203 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7132 Intermediate Similarity NPD7319 Approved
0.7083 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7034 Intermediate Similarity NPD6412 Phase 2
0.6923 Remote Similarity NPD7645 Phase 2
0.6917 Remote Similarity NPD8450 Suspended
0.6842 Remote Similarity NPD8449 Approved
0.6794 Remote Similarity NPD7736 Approved
0.6724 Remote Similarity NPD7638 Approved
0.6723 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7639 Approved
0.6667 Remote Similarity NPD6370 Approved
0.6667 Remote Similarity NPD7640 Approved
0.6639 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6557 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6542 Remote Similarity NPD7525 Registered
0.6512 Remote Similarity NPD6054 Approved
0.6471 Remote Similarity NPD5344 Discontinued
0.6466 Remote Similarity NPD8074 Phase 3
0.6466 Remote Similarity NPD8293 Discontinued
0.6458 Remote Similarity NPD7625 Phase 1
0.6452 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6441 Remote Similarity NPD4225 Approved
0.6406 Remote Similarity NPD7115 Discovery
0.6385 Remote Similarity NPD6059 Approved
0.6379 Remote Similarity NPD7748 Approved
0.6356 Remote Similarity NPD7902 Approved
0.6336 Remote Similarity NPD6015 Approved
0.6336 Remote Similarity NPD6016 Approved
0.6316 Remote Similarity NPD7492 Approved
0.6303 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6288 Remote Similarity NPD5988 Approved
0.6283 Remote Similarity NPD7524 Approved
0.6269 Remote Similarity NPD6616 Approved
0.6241 Remote Similarity NPD6067 Discontinued
0.6239 Remote Similarity NPD6928 Phase 2
0.6222 Remote Similarity NPD7078 Approved
0.622 Remote Similarity NPD6882 Approved
0.622 Remote Similarity NPD8297 Approved
0.621 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6207 Remote Similarity NPD7515 Phase 2
0.6161 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6154 Remote Similarity NPD6009 Approved
0.6148 Remote Similarity NPD7632 Discontinued
0.6136 Remote Similarity NPD6319 Approved
0.6132 Remote Similarity NPD1810 Approved
0.6132 Remote Similarity NPD1811 Approved
0.6116 Remote Similarity NPD6648 Approved
0.6102 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6102 Remote Similarity NPD7900 Approved
0.609 Remote Similarity NPD6921 Approved
0.6071 Remote Similarity NPD6695 Phase 3
0.6066 Remote Similarity NPD4159 Approved
0.6047 Remote Similarity NPD4632 Approved
0.6045 Remote Similarity NPD5125 Phase 3
0.6045 Remote Similarity NPD5126 Approved
0.6 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6 Remote Similarity NPD7750 Discontinued
0.5983 Remote Similarity NPD7838 Discovery
0.5983 Remote Similarity NPD3168 Discontinued
0.5942 Remote Similarity NPD6033 Approved
0.5932 Remote Similarity NPD8034 Phase 2
0.5932 Remote Similarity NPD8035 Phase 2
0.5926 Remote Similarity NPD7339 Approved
0.5926 Remote Similarity NPD6942 Approved
0.5906 Remote Similarity NPD6881 Approved
0.5906 Remote Similarity NPD6899 Approved
0.5897 Remote Similarity NPD6051 Approved
0.5891 Remote Similarity NPD8130 Phase 1
0.5891 Remote Similarity NPD6649 Approved
0.5891 Remote Similarity NPD6650 Approved
0.5877 Remote Similarity NPD6400 Clinical (unspecified phase)
0.5873 Remote Similarity NPD7128 Approved
0.5873 Remote Similarity NPD6402 Approved
0.5873 Remote Similarity NPD6675 Approved
0.5873 Remote Similarity NPD5739 Approved
0.5872 Remote Similarity NPD3701 Clinical (unspecified phase)
0.587 Remote Similarity NPD8448 Approved
0.5859 Remote Similarity NPD6372 Approved
0.5859 Remote Similarity NPD6373 Approved
0.5857 Remote Similarity NPD8390 Approved
0.5857 Remote Similarity NPD8392 Approved
0.5857 Remote Similarity NPD8391 Approved
0.5849 Remote Similarity NPD2254 Approved
0.5849 Remote Similarity NPD2686 Approved
0.5849 Remote Similarity NPD2687 Approved
0.5847 Remote Similarity NPD6698 Approved
0.5847 Remote Similarity NPD46 Approved
0.5846 Remote Similarity NPD6429 Approved
0.5846 Remote Similarity NPD6430 Approved
0.5827 Remote Similarity NPD5697 Approved
0.5814 Remote Similarity NPD7102 Approved
0.5814 Remote Similarity NPD7290 Approved
0.5814 Remote Similarity NPD4634 Approved
0.5814 Remote Similarity NPD6883 Approved
0.5804 Remote Similarity NPD7332 Phase 2
0.5804 Remote Similarity NPD7514 Phase 3
0.5804 Remote Similarity NPD6930 Phase 2
0.5804 Remote Similarity NPD6931 Approved
0.5797 Remote Similarity NPD8451 Approved
0.5789 Remote Similarity NPD3670 Clinical (unspecified phase)
0.5789 Remote Similarity NPD3669 Approved
0.5781 Remote Similarity NPD7320 Approved
0.578 Remote Similarity NPD8264 Approved
0.5769 Remote Similarity NPD6869 Approved
0.5769 Remote Similarity NPD6847 Approved
0.5769 Remote Similarity NPD6617 Approved
0.5766 Remote Similarity NPD7604 Phase 2
0.576 Remote Similarity NPD5211 Phase 2
0.5755 Remote Similarity NPD4267 Clinical (unspecified phase)
0.575 Remote Similarity NPD6399 Phase 3
0.5736 Remote Similarity NPD6014 Approved
0.5736 Remote Similarity NPD6013 Approved
0.5736 Remote Similarity NPD6012 Approved
0.5735 Remote Similarity NPD5983 Phase 2
0.5733 Remote Similarity NPD6674 Discontinued
0.5727 Remote Similarity NPD6933 Approved
0.5726 Remote Similarity NPD5286 Approved
0.5726 Remote Similarity NPD5285 Approved
0.5726 Remote Similarity NPD4696 Approved
0.5714 Remote Similarity NPD8522 Clinical (unspecified phase)
0.5714 Remote Similarity NPD6929 Approved
0.5703 Remote Similarity NPD5701 Approved
0.5701 Remote Similarity NPD7532 Clinical (unspecified phase)
0.5691 Remote Similarity NPD4755 Approved
0.569 Remote Similarity NPD7520 Clinical (unspecified phase)
0.5683 Remote Similarity NPD6336 Discontinued
0.5676 Remote Similarity NPD6932 Approved
0.5669 Remote Similarity NPD5141 Approved
0.5667 Remote Similarity NPD7637 Suspended
0.5667 Remote Similarity NPD6079 Approved
0.5667 Remote Similarity NPD7087 Discontinued
0.5663 Remote Similarity NPD7799 Discontinued
0.5662 Remote Similarity NPD7741 Discontinued
0.5659 Remote Similarity NPD6011 Approved
0.5656 Remote Similarity NPD7991 Discontinued
0.5652 Remote Similarity NPD7830 Approved
0.5652 Remote Similarity NPD7829 Approved
0.5641 Remote Similarity NPD3618 Phase 1
0.5635 Remote Similarity NPD5226 Approved
0.5635 Remote Similarity NPD5224 Approved
0.5635 Remote Similarity NPD5225 Approved
0.5635 Remote Similarity NPD4633 Approved
0.5634 Remote Similarity NPD5956 Approved
0.563 Remote Similarity NPD5328 Approved
0.5629 Remote Similarity NPD8470 Clinical (unspecified phase)
0.5625 Remote Similarity NPD5357 Phase 1
0.5625 Remote Similarity NPD6008 Approved
0.5625 Remote Similarity NPD6640 Phase 3
0.5625 Remote Similarity NPD7145 Approved
0.562 Remote Similarity NPD4202 Approved
0.562 Remote Similarity NPD8444 Approved
0.5614 Remote Similarity NPD6902 Approved
0.5612 Remote Similarity NPD8299 Approved
0.5612 Remote Similarity NPD8342 Approved
0.5612 Remote Similarity NPD8341 Approved
0.5612 Remote Similarity NPD8340 Approved
0.5606 Remote Similarity NPD6053 Discontinued
0.5603 Remote Similarity NPD4786 Approved
0.56 Remote Similarity NPD4700 Approved

Structure

External Identifiers

PubChem CID   45270860
ChEMBL   CHEMBL563297
ZINC  

Physicochemical Properties

Molecular Weight:  1104.57
ALogP:  -5.85
MLogP:  4.87
XLogP:  0.451
# Rotatable Bonds:  33
Polar Surface Area:  366.29
# H-Bond Aceptor:  23
# H-Bond Donor:  14
# Rings:  10
# Heavy Atoms:  77

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs