Natural Product: NPC30289

Natural Product ID:  NPC30289
Common Name:   Nephelioside Vi
IUPAC Name:   (2S,3R,4S,5S,6R)-2-[(2R,3R,4S,5R,6R)-2-[[(3S,4aR,6aR,6bS,8S,8aS,12aS,14aR,14bR)-8-hydroxy-4,4,6a,6b,8a,11,11,14b-octamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-hydroxy-6-(hydroxymethyl)-4-[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
Synonyms:   Nephelioside VI
Molecular Formula:   C47H78O16
Standard InCHIKey:  DCXLHBGAGGUFMT-IVMZQGOASA-N
Standard InCHI:  InChI=1S/C47H78O16/c1-42(2)15-16-44(5)23(17-42)22-9-10-28-45(6)13-12-30(43(3,4)27(45)11-14-46(28,7)47(22,8)18-29(44)51)61-41-38(63-40-36(57)34(55)32(53)25(19-48)59-40)37(33(54)26(20-49)60-41)62-39-35(56)31(52)24(50)21-58-39/h9,23-41,48-57H,10-21H2,1-8H3/t23-,24-,25+,26+,27-,28+,29-,30-,31-,32+,33+,34-,35+,36+,37-,38+,39-,40-,41-,44-,45-,46+,47+/m0/s1
Canonical SMILES:  OC[C@H]1O[C@@H](O[C@H]2CC[C@]3([C@H](C2(C)C)CC[C@@]2([C@@H]3CC=C3[C@@]2(C)C[C@@H]([C@@]2([C@H]3CC(C)(C)CC2)C)O)C)C)[C@@H]([C@H]([C@@H]1O)O[C@@H]1OC[C@@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19602 Nephelium maingayi Species Sapindaceae Eukaryota bark PMID[14987059]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT737 Cell Line HUVEC Homo sapiens ED50 > 20 ug/ml PubChem BioAssay data set
NPT858 Cell Line LNCaP Homo sapiens ED50 > 20 ug/ml PubChem BioAssay data set
NPT83 Cell Line MCF7 Homo sapiens ED50 > 20 ug/ml PubChem BioAssay data set
NPT1034 Cell Line Lu1 Homo sapiens ED50 > 20 ug/ml PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC30289 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC76497
1.0 High Similarity NPC213674
1.0 High Similarity NPC256133
0.9895 High Similarity NPC123796
0.9894 High Similarity NPC117714
0.9894 High Similarity NPC263756
0.9792 High Similarity NPC230948
0.9792 High Similarity NPC471434
0.9792 High Similarity NPC473734
0.9792 High Similarity NPC148603
0.9792 High Similarity NPC471435
0.9691 High Similarity NPC173859
0.9691 High Similarity NPC138057
0.9691 High Similarity NPC470512
0.9592 High Similarity NPC78034
0.9592 High Similarity NPC281939
0.9485 High Similarity NPC162354
0.9394 High Similarity NPC257964
0.9388 High Similarity NPC110656
0.9388 High Similarity NPC203354
0.9388 High Similarity NPC473127
0.9388 High Similarity NPC173583
0.93 High Similarity NPC126147
0.9293 High Similarity NPC160816
0.9293 High Similarity NPC269627
0.9293 High Similarity NPC208594
0.9293 High Similarity NPC69737
0.9293 High Similarity NPC208477
0.9293 High Similarity NPC194842
0.9293 High Similarity NPC127801
0.9293 High Similarity NPC152584
0.9286 High Similarity NPC473123
0.9286 High Similarity NPC473124
0.92 High Similarity NPC190395
0.92 High Similarity NPC14946
0.92 High Similarity NPC208650
0.92 High Similarity NPC63368
0.92 High Similarity NPC181467
0.9192 High Similarity NPC109792
0.9192 High Similarity NPC57065
0.9192 High Similarity NPC54521
0.9184 High Similarity NPC312553
0.9184 High Similarity NPC159036
0.9184 High Similarity NPC288694
0.9126 High Similarity NPC475516
0.9126 High Similarity NPC471383
0.9126 High Similarity NPC292677
0.9126 High Similarity NPC79718
0.9126 High Similarity NPC469946
0.9126 High Similarity NPC101744
0.9126 High Similarity NPC475504
0.9126 High Similarity NPC473373
0.9126 High Similarity NPC104400
0.9126 High Similarity NPC324875
0.9126 High Similarity NPC276093
0.9126 High Similarity NPC10320
0.9126 High Similarity NPC257468
0.9126 High Similarity NPC104071
0.9126 High Similarity NPC102439
0.9126 High Similarity NPC139044
0.9126 High Similarity NPC109079
0.9109 High Similarity NPC159005
0.9109 High Similarity NPC246124
0.9109 High Similarity NPC180183
0.9109 High Similarity NPC6931
0.9109 High Similarity NPC220427
0.91 High Similarity NPC309448
0.9091 High Similarity NPC16573
0.9091 High Similarity NPC473129
0.9091 High Similarity NPC31907
0.9091 High Similarity NPC472252
0.9091 High Similarity NPC16520
0.9091 High Similarity NPC286969
0.9091 High Similarity NPC8039
0.9091 High Similarity NPC211879
0.9091 High Similarity NPC120123
0.9091 High Similarity NPC131479
0.9091 High Similarity NPC245280
0.9091 High Similarity NPC155010
0.9091 High Similarity NPC99627
0.9091 High Similarity NPC157659
0.9091 High Similarity NPC189852
0.9091 High Similarity NPC473020
0.9091 High Similarity NPC114874
0.9053 High Similarity NPC72817
0.9053 High Similarity NPC477927
0.9053 High Similarity NPC305160
0.9038 High Similarity NPC163183
0.9038 High Similarity NPC151543
0.9038 High Similarity NPC473343
0.9038 High Similarity NPC475287
0.9038 High Similarity NPC155410
0.9038 High Similarity NPC219180
0.9038 High Similarity NPC114304
0.9038 High Similarity NPC166422
0.9038 High Similarity NPC258885
0.9038 High Similarity NPC133818
0.9038 High Similarity NPC309714
0.9038 High Similarity NPC241909
0.9038 High Similarity NPC295823
0.9038 High Similarity NPC475467
0.9038 High Similarity NPC251263
0.9038 High Similarity NPC192600
0.9038 High Similarity NPC114287
0.9038 High Similarity NPC134835
0.9038 High Similarity NPC96641
0.9038 High Similarity NPC46665
0.9038 High Similarity NPC150400
0.9038 High Similarity NPC473826
0.9038 High Similarity NPC124296
0.9038 High Similarity NPC174720
0.9038 High Similarity NPC323341
0.9038 High Similarity NPC73318
0.9029 High Similarity NPC164419
0.9029 High Similarity NPC157474
0.9029 High Similarity NPC110494
0.902 High Similarity NPC302057
0.9 High Similarity NPC273879
0.9 High Similarity NPC187400
0.9 High Similarity NPC165033
0.9 High Similarity NPC221562
0.9 High Similarity NPC470885
0.898 High Similarity NPC64348
0.898 High Similarity NPC473200
0.898 High Similarity NPC7341
0.898 High Similarity NPC473790
0.8952 High Similarity NPC298034
0.8952 High Similarity NPC4328
0.8952 High Similarity NPC236638
0.8952 High Similarity NPC309907
0.8952 High Similarity NPC43550
0.8952 High Similarity NPC161717
0.8952 High Similarity NPC164389
0.8952 High Similarity NPC294453
0.8952 High Similarity NPC475486
0.8952 High Similarity NPC70809
0.8952 High Similarity NPC476068
0.8952 High Similarity NPC65105
0.8952 High Similarity NPC473714
0.8952 High Similarity NPC79643
0.8952 High Similarity NPC204414
0.8952 High Similarity NPC224381
0.8952 High Similarity NPC67857
0.8952 High Similarity NPC475140
0.8952 High Similarity NPC227551
0.8952 High Similarity NPC471550
0.8952 High Similarity NPC76972
0.8952 High Similarity NPC123199
0.8952 High Similarity NPC293330
0.8952 High Similarity NPC71065
0.8952 High Similarity NPC119592
0.8952 High Similarity NPC57484
0.8952 High Similarity NPC471385
0.8952 High Similarity NPC60557
0.8952 High Similarity NPC54636
0.8952 High Similarity NPC250247
0.8952 High Similarity NPC305981
0.8952 High Similarity NPC475160
0.8952 High Similarity NPC202828
0.8952 High Similarity NPC41061
0.8952 High Similarity NPC469782
0.8952 High Similarity NPC261506
0.8952 High Similarity NPC100639
0.8942 High Similarity NPC476305
0.8942 High Similarity NPC473383
0.8942 High Similarity NPC139894
0.8932 High Similarity NPC136877
0.8932 High Similarity NPC127056
0.8932 High Similarity NPC475296
0.8932 High Similarity NPC29069
0.8932 High Similarity NPC56713
0.8932 High Similarity NPC279554
0.8932 High Similarity NPC164194
0.8932 High Similarity NPC174679
0.8932 High Similarity NPC90856
0.8932 High Similarity NPC59804
0.8932 High Similarity NPC270667
0.8932 High Similarity NPC474589
0.8911 High Similarity NPC242748
0.8889 High Similarity NPC4831
0.8889 High Similarity NPC309425
0.8889 High Similarity NPC160734
0.8889 High Similarity NPC472023
0.8889 High Similarity NPC88000
0.8889 High Similarity NPC129372
0.8889 High Similarity NPC47566
0.8878 High Similarity NPC234287
0.8878 High Similarity NPC280825
0.8868 High Similarity NPC37134
0.8868 High Similarity NPC291903
0.8868 High Similarity NPC161674
0.8868 High Similarity NPC288205
0.8868 High Similarity NPC26626
0.8868 High Similarity NPC476992
0.8868 High Similarity NPC471384
0.8868 High Similarity NPC75287
0.8868 High Similarity NPC160415
0.8868 High Similarity NPC51465
0.8868 High Similarity NPC305267
0.8868 High Similarity NPC58448

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC30289 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8158 Intermediate Similarity NPD8328 Phase 3
0.8053 Intermediate Similarity NPD8294 Approved
0.8053 Intermediate Similarity NPD8377 Approved
0.7982 Intermediate Similarity NPD8335 Approved
0.7982 Intermediate Similarity NPD8378 Approved
0.7982 Intermediate Similarity NPD8380 Approved
0.7982 Intermediate Similarity NPD8379 Approved
0.7982 Intermediate Similarity NPD8296 Approved
0.7963 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7946 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD8133 Approved
0.7826 Intermediate Similarity NPD8033 Approved
0.7766 Intermediate Similarity NPD7645 Phase 2
0.7647 Intermediate Similarity NPD8171 Discontinued
0.7615 Intermediate Similarity NPD6412 Phase 2
0.7565 Intermediate Similarity NPD7327 Approved
0.7565 Intermediate Similarity NPD7328 Approved
0.75 Intermediate Similarity NPD7516 Approved
0.7373 Intermediate Similarity NPD7503 Approved
0.7232 Intermediate Similarity NPD6686 Approved
0.7143 Intermediate Similarity NPD8450 Suspended
0.7131 Intermediate Similarity NPD7507 Approved
0.7075 Intermediate Similarity NPD7748 Approved
0.7063 Intermediate Similarity NPD8449 Approved
0.7037 Intermediate Similarity NPD7902 Approved
0.697 Remote Similarity NPD7525 Registered
0.6964 Remote Similarity NPD8170 Clinical (unspecified phase)
0.696 Remote Similarity NPD7319 Approved
0.6942 Remote Similarity NPD8513 Phase 3
0.6942 Remote Similarity NPD8515 Approved
0.6942 Remote Similarity NPD8517 Approved
0.6942 Remote Similarity NPD8516 Approved
0.6887 Remote Similarity NPD7515 Phase 2
0.688 Remote Similarity NPD7736 Approved
0.6759 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6759 Remote Similarity NPD7900 Approved
0.6748 Remote Similarity NPD6370 Approved
0.6667 Remote Similarity NPD8293 Discontinued
0.6667 Remote Similarity NPD7638 Approved
0.6607 Remote Similarity NPD7640 Approved
0.6607 Remote Similarity NPD7639 Approved
0.6585 Remote Similarity NPD6059 Approved
0.6585 Remote Similarity NPD6054 Approved
0.656 Remote Similarity NPD6067 Discontinued
0.6531 Remote Similarity NPD1811 Approved
0.6531 Remote Similarity NPD1810 Approved
0.6509 Remote Similarity NPD7524 Approved
0.6471 Remote Similarity NPD6928 Phase 2
0.6471 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6465 Remote Similarity NPD6942 Approved
0.6465 Remote Similarity NPD7339 Approved
0.6422 Remote Similarity NPD8034 Phase 2
0.6422 Remote Similarity NPD8035 Phase 2
0.6417 Remote Similarity NPD6882 Approved
0.6417 Remote Similarity NPD8297 Approved
0.64 Remote Similarity NPD3701 Clinical (unspecified phase)
0.64 Remote Similarity NPD6016 Approved
0.64 Remote Similarity NPD6015 Approved
0.6381 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6378 Remote Similarity NPD7492 Approved
0.6349 Remote Similarity NPD5988 Approved
0.6341 Remote Similarity NPD6009 Approved
0.633 Remote Similarity NPD3168 Discontinued
0.6328 Remote Similarity NPD6616 Approved
0.632 Remote Similarity NPD6319 Approved
0.6303 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6286 Remote Similarity NPD7625 Phase 1
0.6286 Remote Similarity NPD6695 Phase 3
0.6279 Remote Similarity NPD7078 Approved
0.623 Remote Similarity NPD4632 Approved
0.6228 Remote Similarity NPD4225 Approved
0.6224 Remote Similarity NPD2687 Approved
0.6224 Remote Similarity NPD2686 Approved
0.6224 Remote Similarity NPD2254 Approved
0.6218 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6216 Remote Similarity NPD6399 Phase 3
0.6204 Remote Similarity NPD7750 Discontinued
0.6186 Remote Similarity NPD5739 Approved
0.6186 Remote Similarity NPD6675 Approved
0.6186 Remote Similarity NPD7128 Approved
0.6186 Remote Similarity NPD6402 Approved
0.6168 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6167 Remote Similarity NPD6373 Approved
0.6167 Remote Similarity NPD6372 Approved
0.6148 Remote Similarity NPD6430 Approved
0.6148 Remote Similarity NPD6429 Approved
0.6132 Remote Similarity NPD3669 Approved
0.6132 Remote Similarity NPD3670 Clinical (unspecified phase)
0.6121 Remote Similarity NPD5344 Discontinued
0.6116 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6111 Remote Similarity NPD3618 Phase 1
0.6107 Remote Similarity NPD6033 Approved
0.6091 Remote Similarity NPD5328 Approved
0.6087 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6083 Remote Similarity NPD6899 Approved
0.6083 Remote Similarity NPD6881 Approved
0.6083 Remote Similarity NPD7320 Approved
0.608 Remote Similarity NPD7115 Discovery
0.6078 Remote Similarity NPD6933 Approved
0.6075 Remote Similarity NPD4786 Approved
0.6068 Remote Similarity NPD7632 Discontinued
0.6066 Remote Similarity NPD6650 Approved
0.6066 Remote Similarity NPD8130 Phase 1
0.6066 Remote Similarity NPD6649 Approved
0.6061 Remote Similarity NPD7532 Clinical (unspecified phase)
0.6058 Remote Similarity NPD6929 Approved
0.6055 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6038 Remote Similarity NPD3667 Approved
0.6031 Remote Similarity NPD8074 Phase 3
0.6 Remote Similarity NPD6930 Phase 2
0.6 Remote Similarity NPD5701 Approved
0.6 Remote Similarity NPD4755 Approved
0.6 Remote Similarity NPD6931 Approved
0.6 Remote Similarity NPD5697 Approved
0.5984 Remote Similarity NPD7290 Approved
0.5984 Remote Similarity NPD6883 Approved
0.5984 Remote Similarity NPD4634 Approved
0.5984 Remote Similarity NPD7102 Approved
0.5982 Remote Similarity NPD6079 Approved
0.5982 Remote Similarity NPD6411 Approved
0.598 Remote Similarity NPD8264 Approved
0.596 Remote Similarity NPD4267 Clinical (unspecified phase)
0.5935 Remote Similarity NPD6847 Approved
0.5935 Remote Similarity NPD6869 Approved
0.5935 Remote Similarity NPD6617 Approved
0.5929 Remote Similarity NPD4202 Approved
0.5923 Remote Similarity NPD7604 Phase 2
0.5917 Remote Similarity NPD5357 Phase 1
0.5902 Remote Similarity NPD6014 Approved
0.5902 Remote Similarity NPD6012 Approved
0.5902 Remote Similarity NPD6013 Approved
0.5897 Remote Similarity NPD4700 Approved
0.5897 Remote Similarity NPD5285 Approved
0.5897 Remote Similarity NPD4696 Approved
0.5897 Remote Similarity NPD5286 Approved
0.5893 Remote Similarity NPD46 Approved
0.5893 Remote Similarity NPD6698 Approved
0.5893 Remote Similarity NPD7838 Discovery
0.5891 Remote Similarity NPD5983 Phase 2
0.5882 Remote Similarity NPD6926 Approved
0.5882 Remote Similarity NPD6924 Approved
0.5868 Remote Similarity NPD5954 Clinical (unspecified phase)
0.5865 Remote Similarity NPD5776 Phase 2
0.5865 Remote Similarity NPD6925 Approved
0.5865 Remote Similarity NPD6932 Approved
0.5862 Remote Similarity NPD6084 Phase 2
0.5862 Remote Similarity NPD6083 Phase 2
0.5856 Remote Similarity NPD7513 Clinical (unspecified phase)
0.5849 Remote Similarity NPD7509 Discontinued
0.5847 Remote Similarity NPD4159 Approved
0.5842 Remote Similarity NPD4243 Approved
0.5841 Remote Similarity NPD7087 Discontinued
0.5833 Remote Similarity NPD6336 Discontinued
0.5826 Remote Similarity NPD7991 Discontinued
0.582 Remote Similarity NPD6011 Approved
0.581 Remote Similarity NPD7145 Approved
0.5806 Remote Similarity NPD6401 Clinical (unspecified phase)
0.5804 Remote Similarity NPD6101 Approved
0.5804 Remote Similarity NPD5764 Clinical (unspecified phase)
0.5798 Remote Similarity NPD5224 Approved
0.5798 Remote Similarity NPD5226 Approved
0.5798 Remote Similarity NPD5211 Phase 2
0.5798 Remote Similarity NPD5225 Approved
0.5798 Remote Similarity NPD4633 Approved
0.5789 Remote Similarity NPD6123 Approved
0.5785 Remote Similarity NPD4768 Approved
0.5785 Remote Similarity NPD6008 Approved
0.5785 Remote Similarity NPD4767 Approved
0.578 Remote Similarity NPD6400 Clinical (unspecified phase)
0.578 Remote Similarity NPD3133 Approved
0.578 Remote Similarity NPD3665 Phase 1
0.578 Remote Similarity NPD3666 Approved
0.5776 Remote Similarity NPD4697 Phase 3
0.5776 Remote Similarity NPD5221 Approved
0.5776 Remote Similarity NPD5222 Approved
0.5776 Remote Similarity NPD5220 Clinical (unspecified phase)
0.5773 Remote Similarity NPD371 Approved
0.5769 Remote Similarity NPD6921 Approved
0.5766 Remote Similarity NPD3573 Approved
0.5764 Remote Similarity NPD6674 Discontinued
0.5763 Remote Similarity NPD6648 Approved
0.5755 Remote Similarity NPD6683 Phase 2
0.5752 Remote Similarity NPD8522 Clinical (unspecified phase)
0.575 Remote Similarity NPD5175 Approved
0.575 Remote Similarity NPD5174 Approved
0.5748 Remote Similarity NPD6940 Discontinued
0.5728 Remote Similarity NPD4784 Approved
0.5728 Remote Similarity NPD4785 Approved
0.5727 Remote Similarity NPD6893 Approved
0.5726 Remote Similarity NPD5173 Approved
0.5725 Remote Similarity NPD5125 Phase 3
0.5725 Remote Similarity NPD5126 Approved
0.5714 Remote Similarity NPD5223 Approved
0.5702 Remote Similarity NPD5141 Approved
0.5702 Remote Similarity NPD7983 Approved
0.5702 Remote Similarity NPD7637 Suspended
0.5701 Remote Similarity NPD7332 Phase 2
0.5701 Remote Similarity NPD7514 Phase 3
0.5701 Remote Similarity NPD4748 Discontinued
0.5691 Remote Similarity NPD4729 Approved

Structure

External Identifiers

PubChem CID   21575020
ChEMBL   CHEMBL475194
ZINC  

Physicochemical Properties

Molecular Weight:  898.53
ALogP:  -2.2915
MLogP:  4.87
XLogP:  5.1
# Rotatable Bonds:  26
Polar Surface Area:  257.68
# H-Bond Aceptor:  16
# H-Bond Donor:  10
# Rings:  8
# Heavy Atoms:  63

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs